Wall clock time and date at job start Tue Mar 31 2020 18:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.70355 * 2 1 4 4 C 1.53194 * 109.58327 * 120.35174 * 2 1 3 5 5 C 1.53036 * 109.31288 * 174.42023 * 4 2 1 6 6 H 1.09006 * 109.46207 * 178.62376 * 5 4 2 7 7 N 1.46503 * 109.46065 * 58.65706 * 5 4 2 8 8 C 1.34773 * 120.00111 * 155.00339 * 7 5 4 9 9 O 1.21718 * 119.99967 * 359.97438 * 8 7 5 10 10 C 1.46498 * 120.00067 * 180.27683 * 8 7 5 11 11 C 1.36108 * 125.71581 * 179.44281 * 10 8 7 12 12 C 1.42220 * 107.62735 * 179.84413 * 11 10 8 13 13 C 1.45595 * 140.77962 * 180.02562 * 12 11 10 14 14 C 1.31809 * 114.63385 * 180.35306 * 13 12 11 15 15 S 1.75351 * 111.24484 * 359.97438 * 14 13 12 16 16 C 1.38177 * 106.99421 * 0.40838 * 12 11 10 17 17 N 1.37454 * 108.16661 * 359.75318 * 16 12 11 18 18 H 0.96999 * 125.68360 * 179.97438 * 17 16 12 19 19 C 1.53040 * 109.53810 * 298.63353 * 5 4 2 20 20 C 1.53195 * 109.31042 * 61.36641 * 19 5 4 21 21 N 1.46923 * 109.58461 * 239.63685 * 2 1 3 22 22 C 1.36932 * 120.63382 * 6.58816 * 21 2 1 23 23 H 1.08001 * 119.99821 * 330.16038 * 22 21 2 24 24 C 1.38807 * 120.00034 * 150.16331 * 22 21 2 25 25 N 1.31612 * 120.00292 * 344.49906 * 24 22 21 26 26 Si 1.86802 * 119.99827 * 164.50096 * 24 22 21 27 27 H 1.48506 * 109.47441 * 90.00174 * 26 24 22 28 28 H 1.48504 * 109.47187 * 209.99673 * 26 24 22 29 29 H 1.48498 * 109.47209 * 330.00037 * 26 24 22 30 30 H 1.09002 * 109.47303 * 299.65367 * 1 2 3 31 31 H 1.09000 * 109.46932 * 59.64915 * 1 2 3 32 32 H 1.08993 * 109.47303 * 179.64845 * 1 2 3 33 33 H 1.09004 * 109.49925 * 54.46692 * 4 2 1 34 34 H 1.09002 * 109.52176 * 294.38689 * 4 2 1 35 35 H 0.96998 * 119.99968 * 334.99385 * 7 5 4 36 36 H 1.08002 * 126.18264 * 359.97438 * 11 10 8 37 37 H 1.07998 * 122.68321 * 0.36776 * 13 12 11 38 38 H 1.07997 * 124.38003 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.49730 * 181.31533 * 19 5 4 40 40 H 1.08993 * 109.49788 * 301.41179 * 19 5 4 41 41 H 1.09000 * 109.57982 * 185.57932 * 20 19 5 42 42 H 1.08994 * 109.70602 * 65.22081 * 20 19 5 43 43 H 0.97004 * 120.00423 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1703 6 1 3.9376 -1.3450 2.0670 7 7 4.1570 0.4897 1.0751 8 6 5.4211 0.7003 1.4924 9 8 6.0727 -0.2209 1.9488 10 6 6.0087 2.0393 1.4028 11 6 7.2646 2.3839 1.7981 12 6 7.4336 3.7713 1.5347 13 6 8.4243 4.8307 1.6601 14 6 8.0218 6.0123 1.2367 15 16 6.3757 5.9451 0.6362 16 6 6.2487 4.2257 0.9879 17 7 5.3787 3.1646 0.9082 18 1 4.4731 3.2002 0.5626 19 6 3.9568 -1.6659 -0.0632 20 6 3.4650 -0.9471 -1.3236 21 7 2.0225 -0.6997 -1.1944 22 6 1.1536 -1.1137 -2.1684 23 1 0.1398 -1.3811 -1.9095 24 6 1.5760 -1.1897 -3.4885 25 7 2.6864 -0.5887 -3.8599 26 14 0.5681 -2.1450 -4.7380 27 1 -0.4260 -1.2397 -5.3685 28 1 1.4682 -2.6960 -5.7828 29 1 -0.1390 -3.2587 -4.0562 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.6028 -1.7253 1.2915 34 1 1.7659 -0.1671 2.1371 35 1 3.6377 1.2239 0.7115 36 1 8.0006 1.7228 2.2314 37 1 9.4102 4.6620 2.0673 38 1 8.6275 6.9062 1.2569 39 1 5.0411 -1.7698 -0.1034 40 1 3.4982 -2.6529 -0.0049 41 1 3.6518 -1.5721 -2.1968 42 1 3.9900 0.0016 -1.4341 43 1 2.9817 -0.6421 -4.7823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947599261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:22 Heat of formation + Delta-G solvation = 55.396748 kcal Electronic energy + Delta-G solvation = -26485.611157 eV Core-core repulsion = 22851.623956 eV Total energy + Delta-G solvation = -3633.987201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.37373 -39.51119 -37.63263 -35.45534 -34.41119 -32.43223 -31.41054 -30.53062 -29.87636 -28.33354 -26.46604 -25.07669 -23.57888 -22.92690 -22.01262 -20.73387 -20.20548 -19.62482 -19.29897 -18.66863 -16.83137 -16.46026 -15.56711 -15.23388 -15.19290 -15.11271 -14.65603 -14.34999 -14.14173 -13.95131 -13.80219 -13.50245 -13.21541 -12.91175 -12.82145 -12.50431 -11.98081 -11.92555 -11.75624 -11.50197 -11.28725 -11.06935 -10.95162 -10.73896 -10.70792 -10.48843 -10.23674 -10.17000 -9.94506 -9.76683 -9.59044 -9.37284 -8.78367 -8.52359 -8.38485 -7.77588 -6.70419 -5.84336 -3.29196 0.95233 1.21904 1.34599 1.85279 2.80686 3.02497 3.28316 3.32778 3.40937 3.42197 3.49379 4.43177 4.55395 4.79741 4.92198 5.22530 5.27664 5.29048 5.32631 5.49451 5.53961 5.58611 5.60498 5.90163 5.96373 5.98923 6.09075 6.14307 6.22682 6.27156 6.32118 6.36188 6.47727 6.54357 6.60992 6.68865 6.85074 6.91578 6.96069 7.05160 7.29820 7.60616 7.66833 7.76387 8.29541 8.39703 9.15154 9.78499 10.35031 11.23876 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003134 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.254740 B = 8931.356900 C = 9640.303548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.140 4.140 5 C 0.155 3.845 6 H 0.077 0.923 7 N -0.710 5.710 8 C 0.586 3.414 9 O -0.531 6.531 10 C 0.001 3.999 11 C -0.074 4.074 12 C -0.164 4.164 13 C -0.069 4.069 14 C -0.225 4.225 15 S 0.130 5.870 16 C -0.008 4.008 17 N -0.522 5.522 18 H 0.422 0.578 19 C -0.154 4.154 20 C 0.176 3.824 21 N -0.586 5.586 22 C -0.254 4.254 23 H 0.069 0.931 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 H 0.038 0.962 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.395 0.605 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.541 11.189 11.738 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.032 0.968 4 C -0.180 4.180 5 C 0.051 3.949 6 H 0.095 0.905 7 N -0.360 5.360 8 C 0.372 3.628 9 O -0.408 6.408 10 C -0.113 4.113 11 C -0.102 4.102 12 C -0.177 4.177 13 C -0.100 4.100 14 C -0.359 4.359 15 S 0.384 5.616 16 C -0.238 4.238 17 N -0.125 5.125 18 H 0.261 0.739 19 C -0.195 4.195 20 C 0.050 3.950 21 N -0.310 5.310 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.174 0.826 37 H 0.162 0.838 38 H 0.186 0.814 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.951 11.488 11.244 17.141 hybrid contribution -0.175 -1.038 -0.646 1.235 sum 5.776 10.450 10.598 15.965 Atomic orbital electron populations 1.21800 0.95715 1.01694 1.00239 1.20366 0.93280 0.92790 0.87361 0.96814 1.22387 0.93804 1.02576 0.99194 1.20955 0.93071 0.81741 0.99105 0.90527 1.46062 1.13623 1.13029 1.63326 1.16932 0.81811 0.85774 0.78294 1.90837 1.61025 1.42420 1.46478 1.20195 0.94895 0.86906 1.09286 1.20697 0.94919 0.92710 1.01897 1.19375 0.93559 0.94938 1.09800 1.20317 0.99148 0.90289 1.00199 1.24851 0.98926 1.02034 1.10077 1.83954 1.12247 0.96529 1.68915 1.23545 0.94813 0.95390 1.10008 1.41477 1.14083 1.05279 1.51695 0.73935 1.22567 1.00106 0.99496 0.97285 1.20693 0.83110 0.97025 0.94150 1.44129 1.02980 1.64931 1.18924 1.19134 0.95196 1.37938 0.86053 0.91313 1.25091 0.97822 0.99454 0.97023 1.70010 1.24063 1.43743 1.16750 0.86347 0.79401 0.80012 0.81282 1.21436 1.21594 1.20468 0.94315 0.91930 0.92525 0.90374 0.92555 0.76975 0.82623 0.83840 0.81362 0.92602 0.91543 0.89665 0.96591 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.95 37.16 0.30 -2.07 16 2 C 0.17 3.14 3.20 -67.60 -0.22 2.92 16 3 H 0.01 0.26 6.64 -51.93 -0.34 -0.08 16 4 C -0.14 -2.22 5.07 -26.61 -0.13 -2.35 16 5 C 0.15 2.59 2.78 -67.89 -0.19 2.40 16 6 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 7 N -0.71 -11.08 4.27 -55.13 -0.24 -11.32 16 8 C 0.59 9.62 7.74 -12.93 -0.10 9.52 16 9 O -0.53 -10.14 16.51 5.17 0.09 -10.06 16 10 C 0.00 0.01 6.97 -82.47 -0.57 -0.57 16 11 C -0.07 -1.03 10.58 -38.82 -0.41 -1.44 16 12 C -0.16 -2.11 6.80 -105.46 -0.72 -2.83 16 13 C -0.07 -0.69 10.42 -38.54 -0.40 -1.10 16 14 C -0.23 -1.99 11.03 28.84 0.32 -1.68 16 15 S 0.13 1.30 23.24 -107.50 -2.50 -1.20 16 16 C -0.01 -0.11 8.41 -15.05 -0.13 -0.23 16 17 N -0.52 -6.65 6.08 -7.94 -0.05 -6.70 16 18 H 0.42 4.60 8.14 -40.82 -0.33 4.27 16 19 C -0.15 -2.98 5.77 -26.61 -0.15 -3.13 16 20 C 0.18 4.03 5.02 -3.71 -0.02 4.01 16 21 N -0.59 -13.48 2.99 -164.78 -0.49 -13.97 16 22 C -0.25 -6.50 8.58 -15.06 -0.13 -6.63 16 23 H 0.07 1.72 6.23 -52.49 -0.33 1.40 16 24 C 0.00 0.13 4.94 -17.44 -0.09 0.05 16 25 N -0.90 -25.37 11.23 55.49 0.62 -24.75 16 26 Si 0.90 21.13 29.58 -169.99 -5.03 16.10 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 32 H 0.06 1.00 7.40 -51.93 -0.38 0.62 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 5.73 5.94 -40.82 -0.24 5.49 16 36 H 0.16 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 42 H 0.02 0.39 7.74 -51.93 -0.40 -0.02 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 357.16 15.07 5.38 5.38 Total: -1.00 -30.49 357.16 -10.52 -41.00 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.66 Total: 8.64 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.65 Total: -3.13 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.15 Total: -56.74 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.50 Total: -1.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.49 -10.52 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947599261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.400 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds