Wall clock time and date at job start Tue Mar 31 2020 18:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.70355 * 2 1 4 4 C 1.53194 * 109.58327 * 120.35174 * 2 1 3 5 5 C 1.53036 * 109.31288 * 174.42023 * 4 2 1 6 6 H 1.09006 * 109.46207 * 178.62376 * 5 4 2 7 7 N 1.46503 * 109.46065 * 58.65706 * 5 4 2 8 8 C 1.34773 * 120.00111 * 155.00339 * 7 5 4 9 9 O 1.21718 * 119.99967 * 359.97438 * 8 7 5 10 10 C 1.46498 * 120.00067 * 180.27683 * 8 7 5 11 11 C 1.36108 * 125.71581 * 179.44281 * 10 8 7 12 12 C 1.42220 * 107.62735 * 179.84413 * 11 10 8 13 13 C 1.45595 * 140.77962 * 180.02562 * 12 11 10 14 14 C 1.31809 * 114.63385 * 180.35306 * 13 12 11 15 15 S 1.75351 * 111.24484 * 359.97438 * 14 13 12 16 16 C 1.38177 * 106.99421 * 0.40838 * 12 11 10 17 17 N 1.37454 * 108.16661 * 359.75318 * 16 12 11 18 18 H 0.96999 * 125.68360 * 179.97438 * 17 16 12 19 19 C 1.53040 * 109.53810 * 298.63353 * 5 4 2 20 20 C 1.53195 * 109.31042 * 61.36641 * 19 5 4 21 21 N 1.46923 * 109.58461 * 239.63685 * 2 1 3 22 22 C 1.36932 * 120.63382 * 6.58816 * 21 2 1 23 23 H 1.08001 * 119.99821 * 330.16038 * 22 21 2 24 24 C 1.38807 * 120.00034 * 150.16331 * 22 21 2 25 25 N 1.31612 * 120.00292 * 344.49906 * 24 22 21 26 26 Si 1.86802 * 119.99827 * 164.50096 * 24 22 21 27 27 H 1.48506 * 109.47441 * 90.00174 * 26 24 22 28 28 H 1.48504 * 109.47187 * 209.99673 * 26 24 22 29 29 H 1.48498 * 109.47209 * 330.00037 * 26 24 22 30 30 H 1.09002 * 109.47303 * 299.65367 * 1 2 3 31 31 H 1.09000 * 109.46932 * 59.64915 * 1 2 3 32 32 H 1.08993 * 109.47303 * 179.64845 * 1 2 3 33 33 H 1.09004 * 109.49925 * 54.46692 * 4 2 1 34 34 H 1.09002 * 109.52176 * 294.38689 * 4 2 1 35 35 H 0.96998 * 119.99968 * 334.99385 * 7 5 4 36 36 H 1.08002 * 126.18264 * 359.97438 * 11 10 8 37 37 H 1.07998 * 122.68321 * 0.36776 * 13 12 11 38 38 H 1.07997 * 124.38003 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.49730 * 181.31533 * 19 5 4 40 40 H 1.08993 * 109.49788 * 301.41179 * 19 5 4 41 41 H 1.09000 * 109.57982 * 185.57932 * 20 19 5 42 42 H 1.08994 * 109.70602 * 65.22081 * 20 19 5 43 43 H 0.97004 * 120.00423 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5674 -0.8480 1.1703 6 1 3.9376 -1.3450 2.0670 7 7 4.1570 0.4897 1.0751 8 6 5.4211 0.7003 1.4924 9 8 6.0727 -0.2209 1.9488 10 6 6.0087 2.0393 1.4028 11 6 7.2646 2.3839 1.7981 12 6 7.4336 3.7713 1.5347 13 6 8.4243 4.8307 1.6601 14 6 8.0218 6.0123 1.2367 15 16 6.3757 5.9451 0.6362 16 6 6.2487 4.2257 0.9879 17 7 5.3787 3.1646 0.9082 18 1 4.4731 3.2002 0.5626 19 6 3.9568 -1.6659 -0.0632 20 6 3.4650 -0.9471 -1.3236 21 7 2.0225 -0.6997 -1.1944 22 6 1.1536 -1.1137 -2.1684 23 1 0.1398 -1.3811 -1.9095 24 6 1.5760 -1.1897 -3.4885 25 7 2.6864 -0.5887 -3.8599 26 14 0.5681 -2.1450 -4.7380 27 1 -0.4260 -1.2397 -5.3685 28 1 1.4682 -2.6960 -5.7828 29 1 -0.1390 -3.2587 -4.0562 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.6028 -1.7253 1.2915 34 1 1.7659 -0.1671 2.1371 35 1 3.6377 1.2239 0.7115 36 1 8.0006 1.7228 2.2314 37 1 9.4102 4.6620 2.0673 38 1 8.6275 6.9062 1.2569 39 1 5.0411 -1.7698 -0.1034 40 1 3.4982 -2.6529 -0.0049 41 1 3.6518 -1.5721 -2.1968 42 1 3.9900 0.0016 -1.4341 43 1 2.9817 -0.6421 -4.7823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947599261.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:21 Heat of formation + Delta-G solvation = 37.132686 kcal Electronic energy + Delta-G solvation = -26486.403146 eV Core-core repulsion = 22851.623956 eV Total energy + Delta-G solvation = -3634.779190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40851 -40.84703 -39.12842 -36.31897 -35.97319 -34.13743 -32.95486 -31.57211 -31.51725 -29.39362 -27.98550 -26.85135 -24.73996 -23.93185 -23.56795 -22.28498 -21.30166 -20.74933 -20.38912 -20.01686 -18.28183 -17.87292 -17.14074 -16.74282 -16.47342 -16.00122 -15.86941 -15.57917 -15.50293 -15.38692 -15.30619 -14.77265 -14.55912 -14.41282 -14.12963 -13.74878 -13.38613 -13.22136 -12.86157 -12.80396 -12.70555 -12.60934 -12.49624 -12.36363 -12.20285 -12.01335 -11.75317 -11.74521 -11.46102 -11.30470 -11.02132 -10.57207 -10.52931 -10.16497 -9.29054 -8.65977 -8.61153 -7.84920 -5.30600 0.08549 0.20365 0.43654 1.08407 1.44732 1.48023 1.55583 1.82536 1.98239 2.11780 2.33141 2.51347 3.31265 3.55485 3.61643 3.81415 3.90014 4.02333 4.04675 4.16088 4.40153 4.43026 4.55882 4.62327 4.64408 4.74835 4.77186 4.88710 4.93294 4.99390 5.07393 5.12136 5.15934 5.20674 5.37858 5.43031 5.46954 5.51010 5.54466 5.66121 5.71444 5.73590 6.08672 6.41104 6.42811 7.01498 7.17339 7.89530 8.40794 9.21171 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.003134 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.254740 B = 8931.356900 C = 9640.303548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.160 3.840 3 H 0.021 0.979 4 C -0.126 4.126 5 C 0.160 3.840 6 H 0.085 0.915 7 N -0.704 5.704 8 C 0.588 3.412 9 O -0.563 6.563 10 C -0.020 4.020 11 C -0.081 4.081 12 C -0.179 4.179 13 C -0.085 4.085 14 C -0.210 4.210 15 S 0.148 5.852 16 C -0.025 4.025 17 N -0.520 5.520 18 H 0.428 0.572 19 C -0.143 4.143 20 C 0.189 3.811 21 N -0.600 5.600 22 C -0.248 4.248 23 H 0.076 0.924 24 C -0.051 4.051 25 N -0.936 5.936 26 Si 0.957 3.043 27 H -0.286 1.286 28 H -0.300 1.300 29 H -0.270 1.270 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.160 0.840 37 H 0.167 0.833 38 H 0.204 0.796 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.044 0.956 42 H -0.004 1.004 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.071 12.770 13.427 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.038 0.962 4 C -0.165 4.165 5 C 0.056 3.944 6 H 0.103 0.897 7 N -0.354 5.354 8 C 0.375 3.625 9 O -0.442 6.442 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.192 4.192 13 C -0.115 4.115 14 C -0.344 4.344 15 S 0.402 5.598 16 C -0.254 4.254 17 N -0.124 5.124 18 H 0.267 0.733 19 C -0.183 4.183 20 C 0.063 3.937 21 N -0.325 5.325 22 C -0.378 4.378 23 H 0.093 0.907 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.786 3.214 27 H -0.213 1.213 28 H -0.227 1.227 29 H -0.195 1.195 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.109 0.891 35 H 0.237 0.763 36 H 0.177 0.823 37 H 0.185 0.815 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.439 13.087 12.959 19.203 hybrid contribution 0.010 -1.405 -1.130 1.803 sum 5.449 11.682 11.828 17.494 Atomic orbital electron populations 1.21739 0.94390 1.01556 1.01127 1.20651 0.94450 0.92963 0.86476 0.96150 1.22265 0.92518 1.02829 0.98929 1.20864 0.93974 0.81880 0.97690 0.89722 1.45969 1.13584 1.12796 1.63100 1.17137 0.81616 0.86198 0.77503 1.90809 1.61730 1.43629 1.48056 1.19936 0.95494 0.86692 1.11187 1.20904 0.94804 0.93647 1.01559 1.19750 0.94664 0.94946 1.09853 1.20554 0.99829 0.89811 1.01310 1.25318 0.98266 1.02833 1.07939 1.83961 1.13227 0.94166 1.68494 1.24044 0.94800 0.96679 1.09872 1.41395 1.14392 1.04970 1.51637 0.73270 1.22387 0.99338 0.99609 0.96947 1.20361 0.83563 0.95525 0.94270 1.44341 1.02549 1.65746 1.19823 1.19471 0.95579 1.36269 0.86509 0.90659 1.25764 0.99005 1.00992 0.98885 1.70165 1.25881 1.45796 1.16405 0.85429 0.77894 0.78972 0.79073 1.21260 1.22665 1.19523 0.90467 0.94059 0.93090 0.90215 0.89093 0.76290 0.82286 0.81528 0.77909 0.93514 0.91485 0.93721 0.98601 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.95 71.98 0.57 -3.62 16 2 C 0.16 5.68 3.20 44.98 0.14 5.82 16 3 H 0.02 0.72 6.64 -2.39 -0.02 0.71 16 4 C -0.13 -3.67 5.07 30.67 0.16 -3.51 16 5 C 0.16 5.16 2.78 45.02 0.13 5.28 16 6 H 0.08 2.68 7.58 -2.38 -0.02 2.67 16 7 N -0.70 -21.61 4.27 -446.53 -1.90 -23.51 16 8 C 0.59 19.38 7.74 86.40 0.67 20.05 16 9 O -0.56 -21.74 16.51 -4.41 -0.07 -21.82 16 10 C -0.02 -0.58 6.97 39.81 0.28 -0.30 16 11 C -0.08 -2.25 10.58 22.76 0.24 -2.01 16 12 C -0.18 -4.43 6.80 -20.41 -0.14 -4.57 16 13 C -0.09 -1.52 10.42 23.40 0.24 -1.28 16 14 C -0.21 -3.06 11.03 67.05 0.74 -2.32 16 15 S 0.15 2.66 23.24 -56.49 -1.31 1.34 16 16 C -0.02 -0.60 8.41 83.80 0.70 0.10 16 17 N -0.52 -13.10 6.08 -179.04 -1.09 -14.19 16 18 H 0.43 9.21 8.14 -92.71 -0.75 8.45 16 19 C -0.14 -5.56 5.77 30.67 0.18 -5.38 16 20 C 0.19 8.91 5.02 86.36 0.43 9.34 16 21 N -0.60 -27.67 2.99 -675.24 -2.02 -29.69 16 22 C -0.25 -12.75 8.58 84.03 0.72 -12.03 16 23 H 0.08 3.72 6.23 -2.91 -0.02 3.70 16 24 C -0.05 -2.79 4.94 84.86 0.42 -2.37 16 25 N -0.94 -54.56 11.23 21.65 0.24 -54.32 16 26 Si 0.96 44.19 29.58 68.60 2.03 46.22 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 29 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.05 1.68 7.40 -2.39 -0.02 1.66 16 33 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.40 11.34 5.94 -92.71 -0.55 10.79 16 36 H 0.16 4.12 8.06 -2.91 -0.02 4.09 16 37 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.04 2.46 6.15 -2.39 -0.01 2.45 16 42 H 0.00 -0.20 7.74 -2.39 -0.02 -0.22 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -67.52 357.16 1.12 -66.40 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.24 Total: 26.36 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 5.48 Total: 3.20 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -4.77 Total: -121.70 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.82 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.31 Total: 1.34 kcal Total: -67.52 1.12 -66.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947599261.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.536 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds