Wall clock time and date at job start Tue Mar 31 2020 18:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.69978 * 2 1 4 4 C 1.53186 * 109.58913 * 239.64024 * 2 1 3 5 5 C 1.53040 * 109.31658 * 185.58095 * 4 2 1 6 6 H 1.09000 * 109.45411 * 301.36022 * 5 4 2 7 7 N 1.46496 * 109.46318 * 181.38676 * 5 4 2 8 8 C 1.34776 * 119.99945 * 154.99910 * 7 5 4 9 9 O 1.21718 * 120.00168 * 359.97438 * 8 7 5 10 10 C 1.46496 * 119.99945 * 180.02562 * 8 7 5 11 11 C 1.36114 * 125.71316 * 180.02562 * 10 8 7 12 12 C 1.42226 * 107.62278 * 179.97438 * 11 10 8 13 13 C 1.45593 * 140.77299 * 180.02562 * 12 11 10 14 14 C 1.31811 * 114.63120 * 179.97438 * 13 12 11 15 15 S 1.75350 * 111.24422 * 0.03176 * 14 13 12 16 16 C 1.38169 * 106.99936 * 359.97438 * 12 11 10 17 17 N 1.37460 * 108.16729 * 0.02562 * 16 12 11 18 18 H 0.97001 * 125.67907 * 179.73880 * 17 16 12 19 19 C 1.53040 * 109.54043 * 61.35878 * 5 4 2 20 20 C 1.53193 * 109.31412 * 298.64280 * 19 5 4 21 21 N 1.46929 * 108.77840 * 54.63117 * 20 19 5 22 22 C 1.36930 * 120.62907 * 126.36843 * 21 20 19 23 23 H 1.08006 * 119.99824 * 209.07113 * 22 21 20 24 24 C 1.38811 * 120.00491 * 29.07121 * 22 21 20 25 25 N 1.31620 * 119.99384 * 15.03590 * 24 22 21 26 26 Si 1.86796 * 120.00485 * 195.03495 * 24 22 21 27 27 H 1.48508 * 109.46944 * 89.99937 * 26 24 22 28 28 H 1.48499 * 109.47296 * 209.99753 * 26 24 22 29 29 H 1.48498 * 109.47217 * 330.00577 * 26 24 22 30 30 H 1.09001 * 109.46611 * 180.35888 * 1 2 3 31 31 H 1.09000 * 109.46840 * 300.35760 * 1 2 3 32 32 H 1.08997 * 109.46819 * 60.36173 * 1 2 3 33 33 H 1.08998 * 109.50078 * 65.62468 * 4 2 1 34 34 H 1.09001 * 109.49585 * 305.53160 * 4 2 1 35 35 H 0.96999 * 120.00103 * 334.99468 * 7 5 4 36 36 H 1.08003 * 126.18594 * 0.02562 * 11 10 8 37 37 H 1.07995 * 122.68595 * 359.95291 * 13 12 11 38 38 H 1.08004 * 124.38004 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.49539 * 58.58952 * 19 5 4 40 40 H 1.08995 * 109.49683 * 178.68668 * 19 5 4 41 41 H 1.08997 * 109.58499 * 294.84569 * 20 19 5 42 42 H 1.08995 * 109.70191 * 174.48752 * 20 19 5 43 43 H 0.97002 * 119.99941 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 6 3.5676 -0.8481 -1.1700 6 1 4.0062 0.1472 -1.0989 7 7 4.0653 -1.5159 -2.3752 8 6 5.3296 -1.3024 -2.7905 9 8 6.0577 -0.5543 -2.1646 10 6 5.8271 -1.9697 -3.9960 11 6 7.0775 -1.8392 -4.5177 12 6 7.1451 -2.6523 -5.6826 13 6 8.0723 -3.0376 -6.7369 14 6 7.5776 -3.8783 -7.6235 15 16 5.9125 -4.2849 -7.2534 16 6 5.9108 -3.2567 -5.8255 17 7 5.1062 -2.8375 -4.7928 18 1 4.1845 -3.1038 -4.6498 19 6 3.9570 -1.6657 0.0637 20 6 3.4651 -0.9468 1.3239 21 7 2.0225 -0.6994 1.1946 22 6 1.1537 -1.1133 2.1687 23 1 0.1362 -1.3686 1.9117 24 6 1.5805 -1.2047 3.4864 25 7 2.7030 -0.6253 3.8561 26 14 0.5620 -2.1500 4.7347 27 1 0.9975 -3.5696 4.7558 28 1 0.7517 -1.5540 6.0815 29 1 -0.8729 -2.0781 4.3591 30 1 -0.3632 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.7661 -0.1670 -2.1368 34 1 1.6030 -1.7254 -1.2911 35 1 3.4850 -2.1118 -2.8742 36 1 7.8745 -1.2291 -4.1187 37 1 9.0843 -2.6642 -6.7887 38 1 8.1267 -4.2664 -8.4686 39 1 3.4984 -2.6528 0.0056 40 1 5.0413 -1.7695 0.1039 41 1 3.9903 0.0022 1.4318 42 1 3.6520 -1.5694 2.1988 43 1 3.0011 -0.6889 4.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947599267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:39 Heat of formation + Delta-G solvation = 53.971153 kcal Electronic energy + Delta-G solvation = -25787.584460 eV Core-core repulsion = 22153.535441 eV Total energy + Delta-G solvation = -3634.049020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.52380 -39.44598 -37.63696 -35.60945 -34.70477 -32.47180 -31.45651 -30.70010 -29.79562 -28.45911 -26.42055 -24.97983 -23.58206 -23.00371 -21.92171 -20.63127 -20.26758 -19.92628 -19.39324 -18.98637 -16.94251 -16.30890 -15.92222 -15.40694 -15.26464 -15.13889 -14.80969 -14.30143 -14.17292 -13.93349 -13.68194 -13.67177 -13.30933 -13.01758 -12.82327 -12.70892 -12.12451 -11.92087 -11.64374 -11.27628 -11.16447 -11.11896 -10.95921 -10.94729 -10.70116 -10.35361 -10.23905 -10.11091 -10.04162 -9.78479 -9.74358 -9.44349 -8.86110 -8.55170 -8.45025 -7.93471 -6.67510 -5.78873 -3.23352 0.78201 1.05267 1.20179 1.69070 2.66443 2.83721 3.12819 3.34977 3.36391 3.42981 3.44392 4.41038 4.46982 4.63474 4.77766 5.14575 5.20734 5.31150 5.34490 5.40330 5.48221 5.52127 5.70495 5.82768 5.91564 5.94698 6.09941 6.15393 6.17182 6.26763 6.32972 6.37538 6.44145 6.46330 6.58399 6.75325 6.79036 6.88526 6.98471 7.05436 7.35200 7.52761 7.68353 7.80390 8.17731 8.44878 9.20329 9.83709 10.40431 11.29705 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.002305 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.219959 B =12146.401130 C =12314.324372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.085 0.915 7 N -0.721 5.721 8 C 0.583 3.417 9 O -0.520 6.520 10 C -0.002 4.002 11 C -0.072 4.072 12 C -0.163 4.163 13 C -0.068 4.068 14 C -0.224 4.224 15 S 0.129 5.871 16 C -0.011 4.011 17 N -0.525 5.525 18 H 0.420 0.580 19 C -0.147 4.147 20 C 0.174 3.826 21 N -0.588 5.588 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.388 0.612 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.170 0.830 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.021 0.979 42 H 0.092 0.908 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -6.349 -23.177 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.371 5.371 8 C 0.369 3.631 9 O -0.395 6.395 10 C -0.115 4.115 11 C -0.100 4.100 12 C -0.176 4.176 13 C -0.099 4.099 14 C -0.357 4.357 15 S 0.382 5.618 16 C -0.240 4.240 17 N -0.129 5.129 18 H 0.258 0.742 19 C -0.187 4.187 20 C 0.048 3.952 21 N -0.311 5.311 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.221 0.779 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.187 0.813 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.110 0.890 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.247 -6.676 -23.106 24.617 hybrid contribution -0.124 -0.142 1.113 1.129 sum 5.122 -6.817 -21.993 23.588 Atomic orbital electron populations 1.21792 0.95707 1.01431 1.00348 1.20353 0.93100 0.93614 0.86559 0.95437 1.22397 0.93512 1.01657 0.99867 1.21130 0.94372 0.96890 0.82791 0.89647 1.46259 1.12684 1.48616 1.29519 1.16969 0.82296 0.81342 0.82542 1.90891 1.56218 1.36772 1.55639 1.20257 0.93511 1.01002 0.96698 1.20761 0.95597 0.99910 0.93723 1.19396 0.93091 1.05034 1.00035 1.20347 0.99686 0.97426 0.92415 1.24858 0.97953 1.06985 1.05953 1.83917 1.11830 1.47773 1.18294 1.23554 0.95288 1.06875 0.98270 1.41430 1.13109 1.37938 1.20392 0.74169 1.22585 0.99894 0.99534 0.96724 1.20770 0.83186 0.97412 0.93862 1.44173 1.03009 1.64855 1.19051 1.19173 0.94847 1.37865 0.86248 0.91199 1.25107 0.97842 0.99695 0.97004 1.70013 1.23351 1.44352 1.16922 0.86307 0.79794 0.79763 0.80979 1.21531 1.21774 1.20473 0.92778 0.91803 0.94311 0.92663 0.91850 0.77887 0.82480 0.83711 0.81272 0.92705 0.92717 0.96070 0.89030 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.40 3.50 -67.60 -0.24 3.16 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.15 2.55 2.41 -67.89 -0.16 2.38 16 6 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 7 N -0.72 -9.81 5.07 -55.13 -0.28 -10.09 16 8 C 0.58 8.77 7.74 -12.93 -0.10 8.67 16 9 O -0.52 -9.81 16.51 5.17 0.09 -9.73 16 10 C 0.00 -0.02 6.97 -82.47 -0.57 -0.59 16 11 C -0.07 -0.90 10.58 -38.81 -0.41 -1.31 16 12 C -0.16 -1.83 6.80 -105.46 -0.72 -2.55 16 13 C -0.07 -0.59 10.42 -38.54 -0.40 -0.99 16 14 C -0.22 -1.63 11.03 28.84 0.32 -1.32 16 15 S 0.13 1.02 23.24 -107.50 -2.50 -1.48 16 16 C -0.01 -0.12 8.41 -15.05 -0.13 -0.24 16 17 N -0.53 -5.26 6.08 -7.94 -0.05 -5.31 16 18 H 0.42 3.01 8.14 -40.82 -0.33 2.68 16 19 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 20 C 0.17 4.14 5.29 -3.71 -0.02 4.12 16 21 N -0.59 -14.11 2.99 -164.78 -0.49 -14.60 16 22 C -0.25 -6.60 8.61 -15.06 -0.13 -6.73 16 23 H 0.07 1.78 6.20 -52.48 -0.33 1.45 16 24 C 0.00 0.06 4.96 -17.43 -0.09 -0.03 16 25 N -0.90 -25.96 11.14 55.49 0.62 -25.34 16 26 Si 0.90 21.40 29.58 -169.99 -5.03 16.37 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H 0.05 0.97 7.40 -51.93 -0.38 0.59 16 31 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 4.02 7.67 -40.82 -0.31 3.71 16 36 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -31.75 361.29 -10.66 -42.40 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -5.82 Total: 5.18 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.63 Total: -2.85 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.20 Total: -55.34 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.50 Total: -1.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.75 -10.66 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947599267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.375 kcal (2) G-P(sol) polarization free energy of solvation -31.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds