Wall clock time and date at job start Tue Mar 31 2020 18:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.69978 * 2 1 4 4 C 1.53186 * 109.58913 * 239.64024 * 2 1 3 5 5 C 1.53040 * 109.31658 * 185.58095 * 4 2 1 6 6 H 1.09000 * 109.45411 * 301.36022 * 5 4 2 7 7 N 1.46496 * 109.46318 * 181.38676 * 5 4 2 8 8 C 1.34776 * 119.99945 * 154.99910 * 7 5 4 9 9 O 1.21718 * 120.00168 * 359.97438 * 8 7 5 10 10 C 1.46496 * 119.99945 * 180.02562 * 8 7 5 11 11 C 1.36114 * 125.71316 * 180.02562 * 10 8 7 12 12 C 1.42226 * 107.62278 * 179.97438 * 11 10 8 13 13 C 1.45593 * 140.77299 * 180.02562 * 12 11 10 14 14 C 1.31811 * 114.63120 * 179.97438 * 13 12 11 15 15 S 1.75350 * 111.24422 * 0.03176 * 14 13 12 16 16 C 1.38169 * 106.99936 * 359.97438 * 12 11 10 17 17 N 1.37460 * 108.16729 * 0.02562 * 16 12 11 18 18 H 0.97001 * 125.67907 * 179.73880 * 17 16 12 19 19 C 1.53040 * 109.54043 * 61.35878 * 5 4 2 20 20 C 1.53193 * 109.31412 * 298.64280 * 19 5 4 21 21 N 1.46929 * 108.77840 * 54.63117 * 20 19 5 22 22 C 1.36930 * 120.62907 * 126.36843 * 21 20 19 23 23 H 1.08006 * 119.99824 * 209.07113 * 22 21 20 24 24 C 1.38811 * 120.00491 * 29.07121 * 22 21 20 25 25 N 1.31620 * 119.99384 * 15.03590 * 24 22 21 26 26 Si 1.86796 * 120.00485 * 195.03495 * 24 22 21 27 27 H 1.48508 * 109.46944 * 89.99937 * 26 24 22 28 28 H 1.48499 * 109.47296 * 209.99753 * 26 24 22 29 29 H 1.48498 * 109.47217 * 330.00577 * 26 24 22 30 30 H 1.09001 * 109.46611 * 180.35888 * 1 2 3 31 31 H 1.09000 * 109.46840 * 300.35760 * 1 2 3 32 32 H 1.08997 * 109.46819 * 60.36173 * 1 2 3 33 33 H 1.08998 * 109.50078 * 65.62468 * 4 2 1 34 34 H 1.09001 * 109.49585 * 305.53160 * 4 2 1 35 35 H 0.96999 * 120.00103 * 334.99468 * 7 5 4 36 36 H 1.08003 * 126.18594 * 0.02562 * 11 10 8 37 37 H 1.07995 * 122.68595 * 359.95291 * 13 12 11 38 38 H 1.08004 * 124.38004 * 180.02562 * 14 13 12 39 39 H 1.09001 * 109.49539 * 58.58952 * 19 5 4 40 40 H 1.08995 * 109.49683 * 178.68668 * 19 5 4 41 41 H 1.08997 * 109.58499 * 294.84569 * 20 19 5 42 42 H 1.08995 * 109.70191 * 174.48752 * 20 19 5 43 43 H 0.97002 * 119.99941 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0437 -0.7294 -1.2453 5 6 3.5676 -0.8481 -1.1700 6 1 4.0062 0.1472 -1.0989 7 7 4.0653 -1.5159 -2.3752 8 6 5.3296 -1.3024 -2.7905 9 8 6.0577 -0.5543 -2.1646 10 6 5.8271 -1.9697 -3.9960 11 6 7.0775 -1.8392 -4.5177 12 6 7.1451 -2.6523 -5.6826 13 6 8.0723 -3.0376 -6.7369 14 6 7.5776 -3.8783 -7.6235 15 16 5.9125 -4.2849 -7.2534 16 6 5.9108 -3.2567 -5.8255 17 7 5.1062 -2.8375 -4.7928 18 1 4.1845 -3.1038 -4.6498 19 6 3.9570 -1.6657 0.0637 20 6 3.4651 -0.9468 1.3239 21 7 2.0225 -0.6994 1.1946 22 6 1.1537 -1.1133 2.1687 23 1 0.1362 -1.3686 1.9117 24 6 1.5805 -1.2047 3.4864 25 7 2.7030 -0.6253 3.8561 26 14 0.5620 -2.1500 4.7347 27 1 0.9975 -3.5696 4.7558 28 1 0.7517 -1.5540 6.0815 29 1 -0.8729 -2.0781 4.3591 30 1 -0.3632 -1.0277 0.0064 31 1 -0.3633 0.5194 0.8868 32 1 -0.3633 0.5082 -0.8932 33 1 1.7661 -0.1670 -2.1368 34 1 1.6030 -1.7254 -1.2911 35 1 3.4850 -2.1118 -2.8742 36 1 7.8745 -1.2291 -4.1187 37 1 9.0843 -2.6642 -6.7887 38 1 8.1267 -4.2664 -8.4686 39 1 3.4984 -2.6528 0.0056 40 1 5.0413 -1.7695 0.1039 41 1 3.9903 0.0022 1.4318 42 1 3.6520 -1.5694 2.1988 43 1 3.0011 -0.6889 4.7770 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947599267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:38 Heat of formation + Delta-G solvation = 33.631883 kcal Electronic energy + Delta-G solvation = -25788.466437 eV Core-core repulsion = 22153.535441 eV Total energy + Delta-G solvation = -3634.930997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40939 -40.71582 -39.19030 -36.37230 -36.15980 -34.25808 -33.04466 -31.57002 -31.46010 -29.45381 -27.95825 -26.73320 -24.71503 -23.93104 -23.45504 -22.05692 -21.43420 -21.11105 -20.34735 -20.13783 -18.34319 -17.76549 -17.32572 -16.86119 -16.46280 -15.97709 -15.78388 -15.59229 -15.48197 -15.36457 -15.18911 -14.91868 -14.66024 -14.44693 -14.31045 -13.73892 -13.34933 -12.98275 -12.80462 -12.75383 -12.70197 -12.65036 -12.60347 -12.39298 -12.08789 -11.89194 -11.76018 -11.73988 -11.54947 -11.50785 -11.08810 -10.58662 -10.55517 -10.16820 -9.29304 -8.66420 -8.64461 -7.84034 -5.30721 0.07851 0.17860 0.42658 1.07046 1.47134 1.48310 1.56842 1.81175 1.90030 2.11675 2.30331 2.52135 3.31986 3.53823 3.62337 3.81437 3.83284 4.01143 4.02422 4.22729 4.36262 4.42110 4.59322 4.63381 4.68122 4.73160 4.76986 4.78144 4.92345 5.02905 5.04330 5.11326 5.15611 5.20041 5.36572 5.40453 5.42861 5.51235 5.54780 5.63246 5.70850 5.72819 6.13171 6.42126 6.43364 7.02761 7.16595 7.88331 8.40905 9.23335 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.024253 B = 0.002305 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.219959 B =12146.401130 C =12314.324372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.012 0.988 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.061 0.939 7 N -0.705 5.705 8 C 0.586 3.414 9 O -0.566 6.566 10 C -0.015 4.015 11 C -0.084 4.084 12 C -0.183 4.183 13 C -0.088 4.088 14 C -0.212 4.212 15 S 0.161 5.839 16 C -0.020 4.020 17 N -0.514 5.514 18 H 0.433 0.567 19 C -0.131 4.131 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.941 5.941 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.264 1.264 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.202 0.798 39 H 0.062 0.938 40 H 0.045 0.955 41 H -0.012 1.012 42 H 0.057 0.943 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -8.254 -26.794 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.030 0.970 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.080 0.920 7 N -0.355 5.355 8 C 0.373 3.627 9 O -0.445 6.445 10 C -0.129 4.129 11 C -0.113 4.113 12 C -0.196 4.196 13 C -0.118 4.118 14 C -0.346 4.346 15 S 0.415 5.585 16 C -0.249 4.249 17 N -0.119 5.119 18 H 0.274 0.726 19 C -0.171 4.171 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.253 4.253 25 N -0.588 5.588 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.188 1.188 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.245 0.755 36 H 0.170 0.830 37 H 0.180 0.820 38 H 0.219 0.781 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.006 0.994 42 H 0.075 0.925 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.771 -8.614 -26.787 28.389 hybrid contribution 0.368 0.448 2.087 2.166 sum 4.140 -8.166 -24.700 26.342 Atomic orbital electron populations 1.21710 0.93775 1.01741 1.01179 1.20645 0.94772 0.92946 0.86387 0.96993 1.22200 0.92076 1.02425 0.99042 1.20748 0.95236 0.95363 0.82848 0.92036 1.45888 1.12683 1.48534 1.28419 1.17231 0.82023 0.80615 0.82781 1.90871 1.57430 1.38911 1.57292 1.19757 0.94033 1.02498 0.96601 1.20915 0.95632 1.00202 0.94506 1.19717 0.94420 1.05137 1.00298 1.20548 1.00445 0.98518 0.92285 1.25321 0.97707 1.05504 1.06023 1.83899 1.12088 1.46359 1.16204 1.24018 0.95102 1.06980 0.98841 1.41277 1.13574 1.37212 1.19852 0.72606 1.22319 0.99118 0.99597 0.96091 1.20461 0.83673 0.95548 0.94754 1.44430 1.02601 1.65565 1.20069 1.19561 0.95361 1.36160 0.86618 0.90104 1.25882 0.99117 1.01240 0.99063 1.70194 1.25372 1.46553 1.16707 0.85304 0.79120 0.78092 0.78189 1.21527 1.22805 1.18824 0.92557 0.94166 0.90396 0.89094 0.90413 0.75453 0.82963 0.82019 0.78104 0.91957 0.93662 0.99382 0.92499 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.95 71.98 0.57 -3.66 16 2 C 0.16 6.14 3.50 44.97 0.16 6.30 16 3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.12 -3.48 4.84 30.67 0.15 -3.33 16 5 C 0.16 5.38 2.41 45.02 0.11 5.49 16 6 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 7 N -0.71 -18.17 5.07 -446.54 -2.27 -20.43 16 8 C 0.59 17.55 7.74 86.40 0.67 18.22 16 9 O -0.57 -22.14 16.51 -4.41 -0.07 -22.22 16 10 C -0.02 -0.38 6.97 39.81 0.28 -0.10 16 11 C -0.08 -2.09 10.58 22.77 0.24 -1.85 16 12 C -0.18 -3.86 6.80 -20.41 -0.14 -4.00 16 13 C -0.09 -1.32 10.42 23.39 0.24 -1.08 16 14 C -0.21 -2.36 11.03 67.04 0.74 -1.62 16 15 S 0.16 2.04 23.24 -56.49 -1.31 0.73 16 16 C -0.02 -0.38 8.41 83.79 0.70 0.33 16 17 N -0.51 -9.32 6.08 -179.04 -1.09 -10.41 16 18 H 0.43 5.06 8.14 -92.71 -0.75 4.30 16 19 C -0.13 -5.21 5.65 30.67 0.17 -5.03 16 20 C 0.18 9.12 5.29 86.36 0.46 9.58 16 21 N -0.60 -29.38 2.99 -675.23 -2.02 -31.40 16 22 C -0.25 -13.01 8.61 84.03 0.72 -12.29 16 23 H 0.08 4.03 6.20 -2.91 -0.02 4.01 16 24 C -0.06 -3.25 4.96 84.86 0.42 -2.83 16 25 N -0.94 -56.73 11.14 21.65 0.24 -56.49 16 26 Si 0.96 44.74 29.58 68.60 2.03 46.77 16 27 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 29 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 30 H 0.06 1.85 7.40 -2.39 -0.02 1.84 16 31 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.41 7.29 7.67 -92.71 -0.71 6.58 16 36 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 39 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.06 3.23 6.06 -2.39 -0.01 3.21 16 43 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -72.73 361.29 0.60 -72.13 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -0.41 Total: 17.21 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 5.50 Total: 4.10 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -5.13 Total: -118.73 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.07 Total: -22.22 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -72.73 0.60 -72.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947599267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.765 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds