Wall clock time and date at job start Tue Mar 31 2020 18:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09005 * 109.44845 * 181.25310 * 5 4 2 7 7 N 1.46497 * 109.46183 * 301.21550 * 5 4 2 8 8 C 1.34781 * 119.99901 * 205.07200 * 7 5 4 9 9 O 1.21726 * 120.00264 * 359.97438 * 8 7 5 10 10 C 1.46463 * 119.99631 * 179.97438 * 8 7 5 11 11 C 1.37461 * 125.80556 * 179.68940 * 10 8 7 12 12 C 1.40650 * 107.55739 * 179.88113 * 11 10 8 13 13 S 1.76023 * 142.39812 * 180.02562 * 12 11 10 14 14 C 1.75588 * 91.31220 * 180.37120 * 13 12 11 15 15 C 1.32774 * 110.47569 * 359.97438 * 14 13 12 16 16 C 1.38253 * 108.03292 * 0.38778 * 12 11 10 17 17 N 1.37921 * 125.80390 * 0.02562 * 10 8 7 18 18 H 0.96994 * 125.68462 * 359.97438 * 17 10 8 19 19 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 5 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99665 * 29.58632 * 22 21 2 24 24 C 1.38808 * 119.99877 * 209.58916 * 22 21 2 25 25 N 1.31618 * 120.00552 * 15.52077 * 24 22 21 26 26 Si 1.86804 * 119.99669 * 195.52646 * 24 22 21 27 27 H 1.48498 * 109.47155 * 180.02562 * 26 24 22 28 28 H 1.48506 * 109.46909 * 300.00011 * 26 24 22 29 29 H 1.48501 * 109.47361 * 59.99417 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 34 34 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 35 35 H 0.97000 * 119.99941 * 25.06544 * 7 5 4 36 36 H 1.08005 * 126.21994 * 359.97438 * 11 10 8 37 37 H 1.08007 * 124.76279 * 180.02562 * 14 13 12 38 38 H 1.08004 * 122.16101 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.49796 * 178.68040 * 19 5 4 40 40 H 1.09000 * 109.52406 * 58.60257 * 19 5 4 41 41 H 1.08998 * 109.58588 * 294.84653 * 20 19 5 42 42 H 1.08997 * 109.70252 * 174.49039 * 20 19 5 43 43 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 3.9312 -1.3415 -2.0713 7 7 4.1578 0.4896 -1.0744 8 6 5.4215 0.6976 -1.4941 9 8 6.0696 -0.2243 -1.9544 10 6 6.0150 2.0330 -1.3964 11 6 7.2891 2.3769 -1.7811 12 6 7.4549 3.7492 -1.5214 13 16 8.6232 5.0603 -1.6422 14 6 7.4800 6.1972 -0.9468 15 6 6.3331 5.5898 -0.6666 16 6 6.2793 4.2258 -0.9715 17 7 5.3928 3.1579 -0.8968 18 1 4.4874 3.1973 -0.5511 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3771 1.9102 24 6 1.5774 -1.1943 3.4879 25 7 2.6899 -0.5972 3.8596 26 14 0.5687 -2.1506 4.7359 27 1 1.2311 -2.0838 6.0633 28 1 -0.7904 -1.5597 4.8311 29 1 0.4631 -3.5679 4.3055 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7632 -0.1564 -2.1349 34 1 1.5964 -1.7169 -1.2937 35 1 3.6414 1.2241 -0.7073 36 1 8.0280 1.7141 -2.2068 37 1 7.6812 7.2439 -0.7723 38 1 5.4958 6.1150 -0.2312 39 1 5.0363 -1.7760 0.0965 40 1 3.4910 -2.6543 -0.0021 41 1 3.9928 -0.0049 1.4310 42 1 3.6506 -1.5776 2.1938 43 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947889914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:50 Heat of formation + Delta-G solvation = 54.649779 kcal Electronic energy + Delta-G solvation = -26511.032020 eV Core-core repulsion = 22877.012428 eV Total energy + Delta-G solvation = -3634.019592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.40295 -39.56340 -37.67425 -35.38215 -34.43237 -32.46237 -31.50205 -30.90343 -29.84386 -28.14884 -26.46212 -25.07904 -23.73128 -22.77600 -22.01270 -20.80437 -20.48822 -19.93127 -18.86887 -18.59332 -16.64030 -16.42441 -15.61769 -15.51487 -15.21563 -15.16144 -14.42057 -14.29761 -14.12658 -13.96880 -13.80906 -13.59066 -13.22806 -12.97230 -12.86414 -12.50567 -11.98231 -11.92638 -11.68528 -11.50715 -11.29377 -11.06140 -10.98402 -10.75904 -10.70450 -10.49643 -10.24241 -10.17264 -9.95579 -9.83515 -9.76947 -9.38343 -8.79789 -8.52224 -8.16860 -7.77808 -6.71040 -5.84546 -3.29439 0.67009 1.41882 1.90544 1.94547 2.64449 2.76646 3.31128 3.33541 3.40372 3.40919 3.44852 4.42890 4.62964 4.81998 4.86258 5.22073 5.22988 5.28470 5.28779 5.40126 5.53541 5.57725 5.62723 5.82499 5.86654 5.89723 6.00960 6.12815 6.22069 6.26680 6.35455 6.36094 6.47202 6.51080 6.56051 6.68873 6.84713 6.91581 6.95757 7.18651 7.29414 7.60363 7.66234 7.75822 8.28312 8.39461 9.14894 9.78197 10.34579 11.23724 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.003019 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.818430 B = 9270.859521 C = 9899.719726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.140 4.140 5 C 0.155 3.845 6 H 0.077 0.923 7 N -0.709 5.709 8 C 0.585 3.415 9 O -0.529 6.529 10 C 0.018 3.982 11 C -0.078 4.078 12 C -0.217 4.217 13 S 0.123 5.877 14 C -0.192 4.192 15 C -0.111 4.111 16 C 0.063 3.937 17 N -0.538 5.538 18 H 0.421 0.579 19 C -0.155 4.155 20 C 0.176 3.824 21 N -0.586 5.586 22 C -0.255 4.255 23 H 0.069 0.931 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.291 1.291 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.396 0.604 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.085 0.915 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 11.350 -11.456 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.062 3.938 3 H 0.032 0.968 4 C -0.180 4.180 5 C 0.051 3.949 6 H 0.095 0.905 7 N -0.360 5.360 8 C 0.370 3.630 9 O -0.406 6.406 10 C -0.098 4.098 11 C -0.109 4.109 12 C -0.337 4.337 13 S 0.382 5.618 14 C -0.328 4.328 15 C -0.144 4.144 16 C -0.056 4.056 17 N -0.140 5.140 18 H 0.259 0.741 19 C -0.195 4.195 20 C 0.050 3.950 21 N -0.309 5.309 22 C -0.384 4.384 23 H 0.087 0.913 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.217 1.217 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.159 0.841 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.104 0.896 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.911 10.770 -12.053 17.996 hybrid contribution -2.630 -0.130 1.753 3.163 sum 5.281 10.640 -10.300 15.722 Atomic orbital electron populations 1.21805 0.95727 1.01630 1.00311 1.20274 0.93287 0.92855 0.87348 0.96830 1.22317 0.93819 1.02612 0.99229 1.20957 0.93013 0.81778 0.99129 0.90502 1.46058 1.13674 1.13164 1.63065 1.16925 0.81838 0.85755 0.78438 1.90842 1.61223 1.42299 1.46256 1.20475 0.94427 0.87021 1.07829 1.20373 0.94940 0.91816 1.03732 1.22660 0.98421 0.99179 1.13467 1.83843 1.14664 0.97154 1.66098 1.25193 0.96830 1.03631 1.07135 1.18927 0.99773 0.90477 1.05265 1.18342 0.90315 0.90189 1.06741 1.42028 1.14273 1.06117 1.51588 0.74071 1.22569 1.00135 0.99471 0.97312 1.20698 0.83132 0.97037 0.94124 1.44112 1.03028 1.64914 1.18894 1.19107 0.95088 1.38098 0.86108 0.91333 1.25087 0.97824 0.99442 0.96999 1.70001 1.23959 1.43746 1.16872 0.86405 0.79566 0.80292 0.80679 1.21674 1.20925 1.21001 0.91889 0.94313 0.92571 0.92504 0.90380 0.76917 0.82655 0.81123 0.84105 0.92590 0.91539 0.96598 0.89630 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.94 37.16 0.29 -2.06 16 2 C 0.17 3.12 3.19 -67.83 -0.22 2.90 16 3 H 0.01 0.26 6.64 -51.93 -0.34 -0.09 16 4 C -0.14 -2.21 5.05 -26.83 -0.14 -2.34 16 5 C 0.15 2.57 2.78 -67.89 -0.19 2.38 16 6 H 0.08 1.28 7.57 -51.93 -0.39 0.88 16 7 N -0.71 -10.98 4.26 -55.14 -0.23 -11.22 16 8 C 0.58 9.56 7.74 -12.95 -0.10 9.46 16 9 O -0.53 -10.12 16.52 5.17 0.09 -10.03 16 10 C 0.02 0.26 7.01 -82.10 -0.58 -0.32 16 11 C -0.08 -1.10 10.60 -38.95 -0.41 -1.52 16 12 C -0.22 -2.84 7.26 -38.67 -0.28 -3.12 16 13 S 0.12 1.25 23.31 -107.50 -2.51 -1.25 16 14 C -0.19 -1.69 11.13 28.86 0.32 -1.36 16 15 C -0.11 -1.11 10.16 -40.85 -0.42 -1.53 16 16 C 0.06 0.78 7.67 -84.00 -0.64 0.14 16 17 N -0.54 -6.71 6.14 -7.34 -0.05 -6.75 16 18 H 0.42 4.40 8.14 -40.82 -0.33 4.07 16 19 C -0.15 -2.97 5.77 -26.61 -0.15 -3.13 16 20 C 0.18 4.01 5.03 -3.71 -0.02 3.99 16 21 N -0.59 -13.42 2.99 -165.03 -0.49 -13.91 16 22 C -0.25 -6.50 8.57 -15.06 -0.13 -6.63 16 23 H 0.07 1.71 6.23 -52.49 -0.33 1.38 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 25 N -0.90 -25.29 11.23 55.49 0.62 -24.67 16 26 Si 0.90 21.09 29.58 -169.99 -5.03 16.06 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.06 1.18 7.62 -51.93 -0.40 0.79 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.99 7.44 -51.93 -0.39 0.60 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.40 5.67 5.95 -40.82 -0.24 5.42 16 36 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.09 2.25 6.14 -51.93 -0.32 1.93 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -30.41 356.88 -10.62 -41.03 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.66 Total: 8.43 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.74 Total: -3.07 kcal Atomic # 7 Polarization: -56.40 SS G_CDS: -0.15 Total: -56.55 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -2.51 Total: -1.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.41 -10.62 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947889914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.682 kcal (2) G-P(sol) polarization free energy of solvation -30.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds