Wall clock time and date at job start Tue Mar 31 2020 18:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.70047 * 2 1 4 4 C 1.52760 * 109.51186 * 239.88741 * 2 1 3 5 5 C 1.53040 * 109.38221 * 185.70592 * 4 2 1 6 6 H 1.09005 * 109.44845 * 181.25310 * 5 4 2 7 7 N 1.46497 * 109.46183 * 301.21550 * 5 4 2 8 8 C 1.34781 * 119.99901 * 205.07200 * 7 5 4 9 9 O 1.21726 * 120.00264 * 359.97438 * 8 7 5 10 10 C 1.46463 * 119.99631 * 179.97438 * 8 7 5 11 11 C 1.37461 * 125.80556 * 179.68940 * 10 8 7 12 12 C 1.40650 * 107.55739 * 179.88113 * 11 10 8 13 13 S 1.76023 * 142.39812 * 180.02562 * 12 11 10 14 14 C 1.75588 * 91.31220 * 180.37120 * 13 12 11 15 15 C 1.32774 * 110.47569 * 359.97438 * 14 13 12 16 16 C 1.38253 * 108.03292 * 0.38778 * 12 11 10 17 17 N 1.37921 * 125.80390 * 0.02562 * 10 8 7 18 18 H 0.96994 * 125.68462 * 359.97438 * 17 10 8 19 19 C 1.53043 * 109.54140 * 61.23858 * 5 4 2 20 20 C 1.53193 * 109.30963 * 298.63474 * 19 5 4 21 21 N 1.46923 * 109.58910 * 120.35564 * 2 1 3 22 22 C 1.36942 * 120.62997 * 353.41990 * 21 2 1 23 23 H 1.07996 * 119.99665 * 29.58632 * 22 21 2 24 24 C 1.38808 * 119.99877 * 209.58916 * 22 21 2 25 25 N 1.31618 * 120.00552 * 15.52077 * 24 22 21 26 26 Si 1.86804 * 119.99669 * 195.52646 * 24 22 21 27 27 H 1.48498 * 109.47155 * 180.02562 * 26 24 22 28 28 H 1.48506 * 109.46909 * 300.00011 * 26 24 22 29 29 H 1.48501 * 109.47361 * 59.99417 * 26 24 22 30 30 H 1.08997 * 109.47177 * 299.64409 * 1 2 3 31 31 H 1.08998 * 109.46969 * 59.64610 * 1 2 3 32 32 H 1.08997 * 109.47304 * 179.64237 * 1 2 3 33 33 H 1.08997 * 109.56594 * 65.66617 * 4 2 1 34 34 H 1.09005 * 109.35800 * 305.61133 * 4 2 1 35 35 H 0.97000 * 119.99941 * 25.06544 * 7 5 4 36 36 H 1.08005 * 126.21994 * 359.97438 * 11 10 8 37 37 H 1.08007 * 124.76279 * 180.02562 * 14 13 12 38 38 H 1.08004 * 122.16101 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.49796 * 178.68040 * 19 5 4 40 40 H 1.09000 * 109.52406 * 58.60257 * 19 5 4 41 41 H 1.08998 * 109.58588 * 294.84653 * 20 19 5 42 42 H 1.08997 * 109.70252 * 174.49039 * 20 19 5 43 43 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0402 -0.7224 -1.2456 5 6 3.5638 -0.8460 -1.1726 6 1 3.9312 -1.3415 -2.0713 7 7 4.1578 0.4896 -1.0744 8 6 5.4215 0.6976 -1.4941 9 8 6.0696 -0.2243 -1.9544 10 6 6.0150 2.0330 -1.3964 11 6 7.2891 2.3769 -1.7811 12 6 7.4549 3.7492 -1.5214 13 16 8.6232 5.0603 -1.6422 14 6 7.4800 6.1972 -0.9468 15 6 6.3331 5.5898 -0.6666 16 6 6.2793 4.2258 -0.9715 17 7 5.3928 3.1579 -0.8968 18 1 4.4874 3.1973 -0.5511 19 6 3.9524 -1.6685 0.0581 20 6 3.4644 -0.9518 1.3211 21 7 2.0225 -0.6995 1.1944 22 6 1.1536 -1.1135 2.1685 23 1 0.1387 -1.3771 1.9102 24 6 1.5774 -1.1943 3.4879 25 7 2.6899 -0.5972 3.8596 26 14 0.5687 -2.1506 4.7359 27 1 1.2311 -2.0838 6.0633 28 1 -0.7904 -1.5597 4.8311 29 1 0.4631 -3.5679 4.3055 30 1 -0.3633 0.5083 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3634 -1.0276 -0.0064 33 1 1.7632 -0.1564 -2.1349 34 1 1.5964 -1.7169 -1.2937 35 1 3.6414 1.2241 -0.7073 36 1 8.0280 1.7141 -2.2068 37 1 7.6812 7.2439 -0.7723 38 1 5.4958 6.1150 -0.2312 39 1 5.0363 -1.7760 0.0965 40 1 3.4910 -2.6543 -0.0021 41 1 3.9928 -0.0049 1.4310 42 1 3.6506 -1.5776 2.1938 43 1 2.9858 -0.6533 4.7816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947889914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:49 Heat of formation + Delta-G solvation = 36.356136 kcal Electronic energy + Delta-G solvation = -26511.825292 eV Core-core repulsion = 22877.012428 eV Total energy + Delta-G solvation = -3634.812864 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.42164 -40.89101 -39.15945 -36.25030 -35.99468 -34.15505 -32.98581 -32.00215 -31.48147 -29.21967 -27.96305 -26.84220 -24.78371 -23.92622 -23.51962 -22.29679 -21.56752 -21.00805 -20.32201 -19.71192 -18.27784 -17.59680 -17.13462 -16.74190 -16.47069 -16.37157 -15.87412 -15.62504 -15.44320 -15.32054 -15.02922 -14.77244 -14.67108 -14.42332 -14.13097 -13.86432 -13.37809 -13.21725 -12.84537 -12.82756 -12.69163 -12.56337 -12.52072 -12.34009 -12.20912 -12.01421 -11.76763 -11.74268 -11.45572 -11.31024 -11.02150 -10.77777 -10.51711 -10.18273 -9.11203 -8.65037 -8.60828 -7.84350 -5.29880 -0.25336 0.58290 0.85547 1.14691 1.46100 1.49084 1.54248 1.76097 1.78202 2.10044 2.23666 2.51845 3.31586 3.58740 3.67464 3.81133 3.92039 3.99370 4.05318 4.16477 4.39200 4.40636 4.52423 4.57423 4.63078 4.74843 4.75967 4.89102 4.90891 4.96674 5.02220 5.07501 5.08604 5.13621 5.38139 5.42499 5.43514 5.51611 5.54773 5.58358 5.71834 5.74083 6.24696 6.42636 6.44284 7.01413 7.17914 7.90208 8.41301 9.21678 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015862 B = 0.003019 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.818430 B = 9270.859521 C = 9899.719726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.161 3.839 3 H 0.022 0.978 4 C -0.126 4.126 5 C 0.160 3.840 6 H 0.084 0.916 7 N -0.703 5.703 8 C 0.587 3.413 9 O -0.563 6.563 10 C -0.006 4.006 11 C -0.084 4.084 12 C -0.251 4.251 13 S 0.136 5.864 14 C -0.168 4.168 15 C -0.132 4.132 16 C 0.066 3.934 17 N -0.534 5.534 18 H 0.428 0.572 19 C -0.143 4.143 20 C 0.189 3.811 21 N -0.600 5.600 22 C -0.249 4.249 23 H 0.076 0.924 24 C -0.051 4.051 25 N -0.935 5.935 26 Si 0.957 3.043 27 H -0.301 1.301 28 H -0.274 1.274 29 H -0.282 1.282 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.402 0.598 36 H 0.154 0.846 37 H 0.209 0.791 38 H 0.166 0.834 39 H 0.046 0.954 40 H 0.066 0.934 41 H -0.003 1.003 42 H 0.044 0.956 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.178 13.320 -12.874 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.040 0.960 4 C -0.166 4.166 5 C 0.056 3.944 6 H 0.102 0.898 7 N -0.353 5.353 8 C 0.375 3.625 9 O -0.443 6.443 10 C -0.121 4.121 11 C -0.115 4.115 12 C -0.370 4.370 13 S 0.395 5.605 14 C -0.303 4.303 15 C -0.164 4.164 16 C -0.054 4.054 17 N -0.137 5.137 18 H 0.268 0.732 19 C -0.183 4.183 20 C 0.063 3.937 21 N -0.324 5.324 22 C -0.379 4.379 23 H 0.093 0.907 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.786 3.214 27 H -0.227 1.227 28 H -0.200 1.200 29 H -0.208 1.208 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.238 0.762 36 H 0.172 0.828 37 H 0.226 0.774 38 H 0.183 0.817 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.015 0.985 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.928 12.745 -13.497 19.814 hybrid contribution -2.265 -0.604 2.145 3.177 sum 4.663 12.141 -11.352 17.263 Atomic orbital electron populations 1.21744 0.94407 1.01538 1.01149 1.20559 0.94447 0.93060 0.86416 0.96041 1.22198 0.92487 1.02878 0.99008 1.20862 0.93946 0.81926 0.97676 0.89775 1.45951 1.13592 1.12927 1.62830 1.17123 0.81655 0.86148 0.77618 1.90812 1.61974 1.43560 1.47928 1.20157 0.94960 0.86888 1.10080 1.20520 0.94900 0.92736 1.03377 1.22950 1.00062 0.99394 1.14643 1.83824 1.14322 0.96325 1.65986 1.25724 0.95472 1.04871 1.04271 1.19215 1.01300 0.89423 1.06493 1.18866 0.89852 0.91084 1.05587 1.41951 1.14646 1.05672 1.51402 0.73190 1.22392 0.99334 0.99589 0.97019 1.20364 0.83607 0.95563 0.94201 1.44322 1.02579 1.65730 1.19811 1.19446 0.95495 1.36434 0.86561 0.90667 1.25755 0.99001 1.00971 0.98853 1.70156 1.25759 1.45798 1.16477 0.85493 0.78501 0.79137 0.78224 1.22722 1.19986 1.20792 0.94034 0.90455 0.93137 0.89010 0.90270 0.76162 0.82788 0.77420 0.81693 0.93560 0.91544 0.98520 0.93711 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 7.94 71.98 0.57 -3.59 16 2 C 0.16 5.63 3.19 44.83 0.14 5.78 16 3 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 4 C -0.13 -3.65 5.05 30.53 0.15 -3.49 16 5 C 0.16 5.14 2.78 45.02 0.13 5.26 16 6 H 0.08 2.67 7.57 -2.38 -0.02 2.65 16 7 N -0.70 -21.38 4.26 -446.55 -1.90 -23.28 16 8 C 0.59 19.38 7.74 86.38 0.67 20.05 16 9 O -0.56 -21.95 16.52 -4.43 -0.07 -22.03 16 10 C -0.01 -0.18 7.01 40.15 0.28 0.10 16 11 C -0.08 -2.43 10.60 22.68 0.24 -2.18 16 12 C -0.25 -6.39 7.26 22.86 0.17 -6.22 16 13 S 0.14 2.52 23.31 -56.49 -1.32 1.20 16 14 C -0.17 -2.36 11.13 66.64 0.74 -1.62 16 15 C -0.13 -2.27 10.16 21.49 0.22 -2.05 16 16 C 0.07 1.56 7.67 38.40 0.29 1.86 16 17 N -0.53 -13.02 6.14 -177.13 -1.09 -14.10 16 18 H 0.43 8.63 8.14 -92.71 -0.75 7.88 16 19 C -0.14 -5.57 5.77 30.67 0.18 -5.40 16 20 C 0.19 8.86 5.03 86.36 0.43 9.30 16 21 N -0.60 -27.50 2.99 -676.05 -2.02 -29.52 16 22 C -0.25 -12.75 8.57 84.03 0.72 -12.03 16 23 H 0.08 3.70 6.23 -2.91 -0.02 3.68 16 24 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 25 N -0.94 -54.28 11.23 21.65 0.24 -54.04 16 26 Si 0.96 44.03 29.58 68.60 2.03 46.06 16 27 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 30 H 0.04 1.48 7.62 -2.39 -0.02 1.47 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.05 1.65 7.44 -2.39 -0.02 1.63 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.40 11.15 5.95 -92.71 -0.55 10.60 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.00 -0.16 7.74 -2.39 -0.02 -0.18 16 42 H 0.04 2.46 6.14 -2.39 -0.01 2.45 16 43 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -67.76 356.88 0.98 -66.78 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: -0.25 Total: 25.48 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.36 Total: 3.45 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -4.77 Total: -120.94 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.03 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.32 Total: 1.20 kcal Total: -67.76 0.98 -66.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947889914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.138 kcal (2) G-P(sol) polarization free energy of solvation -67.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds