Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.70205 * 2 1 4 4 C 1.53190 * 109.58660 * 120.35645 * 2 1 3 5 5 C 1.53045 * 109.31275 * 65.15051 * 4 2 1 6 6 H 1.08998 * 109.45188 * 301.35145 * 5 4 2 7 7 N 1.46507 * 109.45929 * 181.38484 * 5 4 2 8 8 C 1.34777 * 119.99484 * 154.92994 * 7 5 4 9 9 O 1.21728 * 120.00743 * 0.02562 * 8 7 5 10 10 C 1.46457 * 119.99655 * 179.97438 * 8 7 5 11 11 C 1.37456 * 125.80788 * 179.97438 * 10 8 7 12 12 C 1.40661 * 107.55723 * 180.02562 * 11 10 8 13 13 S 1.76019 * 142.39363 * 180.02562 * 12 11 10 14 14 C 1.75594 * 91.30956 * 179.97438 * 13 12 11 15 15 C 1.32772 * 110.47152 * 0.24268 * 14 13 12 16 16 C 1.38237 * 108.03183 * 0.02562 * 12 11 10 17 17 N 1.37928 * 125.80362 * 0.02562 * 10 8 7 18 18 H 0.97000 * 125.68140 * 359.95518 * 17 10 8 19 19 C 1.53036 * 109.54001 * 61.36614 * 5 4 2 20 20 C 1.53190 * 109.31129 * 298.63725 * 19 5 4 21 21 N 1.46925 * 108.77867 * 54.63361 * 20 19 5 22 22 C 1.36934 * 120.63183 * 126.41283 * 21 20 19 23 23 H 1.07998 * 120.00367 * 207.67471 * 22 21 20 24 24 C 1.38812 * 120.00212 * 27.67889 * 22 21 20 25 25 N 1.31619 * 119.99740 * 17.35384 * 24 22 21 26 26 Si 1.86802 * 120.00360 * 197.35341 * 24 22 21 27 27 H 1.48497 * 109.46977 * 89.99467 * 26 24 22 28 28 H 1.48494 * 109.47088 * 209.99863 * 26 24 22 29 29 H 1.48505 * 109.46840 * 329.99879 * 26 24 22 30 30 H 1.09004 * 109.47309 * 180.35262 * 1 2 3 31 31 H 1.09001 * 109.47033 * 300.35158 * 1 2 3 32 32 H 1.09002 * 109.46976 * 60.35246 * 1 2 3 33 33 H 1.08997 * 109.50010 * 305.20023 * 4 2 1 34 34 H 1.08997 * 109.49892 * 185.10059 * 4 2 1 35 35 H 0.96992 * 119.99777 * 334.93271 * 7 5 4 36 36 H 1.08003 * 126.21998 * 0.02599 * 11 10 8 37 37 H 1.08005 * 124.76594 * 179.97438 * 14 13 12 38 38 H 1.08002 * 122.15772 * 179.75387 * 15 14 13 39 39 H 1.09005 * 109.49635 * 58.58247 * 19 5 4 40 40 H 1.09000 * 109.49836 * 178.68142 * 19 5 4 41 41 H 1.09004 * 109.58714 * 174.41884 * 20 19 5 42 42 H 1.08998 * 109.58885 * 294.84387 * 20 19 5 43 43 H 0.96998 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6414 -2.2041 1.1701 6 1 0.5565 -2.2814 1.0992 7 7 2.1023 -2.8979 2.3754 8 6 1.4741 -4.0153 2.7915 9 8 0.5240 -4.4484 2.1658 10 6 1.9352 -4.7091 3.9961 11 6 1.3854 -5.8521 4.5259 12 6 2.1229 -6.1835 5.6769 13 16 2.2256 -7.3691 6.9739 14 6 3.6038 -6.5393 7.6778 15 6 3.9147 -5.4655 6.9615 16 6 3.1163 -5.2356 5.8363 17 7 2.9943 -4.3262 4.7923 18 1 3.5597 -3.5514 4.6476 19 6 2.2799 -2.8465 -0.0635 20 6 1.7691 -2.1411 -1.3237 21 7 2.0226 -0.6996 -1.1945 22 6 2.7044 -0.0210 -2.1690 23 1 3.2696 0.8639 -1.9161 24 6 2.6692 -0.4703 -3.4819 25 7 1.7365 -1.3172 -3.8627 26 14 3.9455 0.1271 -4.7082 27 1 5.1162 -0.7862 -4.6886 28 1 3.3535 0.1441 -6.0699 29 1 4.3812 1.4983 -4.3406 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.6075 -0.2785 2.1368 34 1 3.1297 -0.6504 1.2913 35 1 2.8595 -2.5529 2.8738 36 1 0.5408 -6.3967 4.1303 37 1 4.1227 -6.8554 8.5707 38 1 4.7330 -4.8133 7.2289 39 1 3.3639 -2.7475 -0.0053 40 1 2.0122 -3.9023 -0.1036 41 1 2.2944 -2.5275 -2.1971 42 1 0.6986 -2.3156 -1.4317 43 1 1.7120 -1.6315 -4.7801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947889918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = 52.995875 kcal Electronic energy + Delta-G solvation = -25916.545243 eV Core-core repulsion = 22282.453932 eV Total energy + Delta-G solvation = -3634.091311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.55313 -39.53740 -37.74105 -35.53439 -34.63482 -32.60408 -31.25027 -30.85648 -29.77764 -28.30623 -26.91036 -24.55349 -23.72381 -22.88477 -21.97574 -21.35489 -20.59519 -20.07138 -19.00807 -18.18150 -17.03468 -16.40668 -16.02218 -15.70872 -15.38349 -14.84375 -14.47116 -14.30893 -14.18185 -13.83908 -13.77811 -13.73073 -13.26186 -12.99251 -12.68170 -12.52298 -12.26461 -12.13690 -11.84046 -11.45755 -11.11634 -11.10815 -10.97305 -10.84717 -10.67522 -10.41079 -10.22396 -10.17603 -9.98908 -9.94635 -9.76559 -9.42402 -8.87437 -8.46224 -8.31676 -7.92859 -6.72751 -5.81003 -3.23810 0.51297 1.27313 1.76580 1.80552 2.48085 2.58381 3.17184 3.30165 3.36161 3.42919 3.44210 4.46133 4.46692 4.66408 4.71211 5.06074 5.18195 5.26016 5.32985 5.36902 5.47989 5.53480 5.68259 5.71196 5.72281 5.95721 6.00800 6.18310 6.20212 6.23537 6.32806 6.37748 6.42763 6.53327 6.59815 6.74859 6.80229 6.90167 7.01535 7.12224 7.34894 7.52484 7.67039 7.77606 8.16976 8.42694 9.18517 9.81814 10.38252 11.27213 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.002299 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.985734 B =12178.700919 C =12319.213016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.090 0.910 7 N -0.721 5.721 8 C 0.582 3.418 9 O -0.519 6.519 10 C 0.016 3.984 11 C -0.076 4.076 12 C -0.217 4.217 13 S 0.129 5.871 14 C -0.191 4.191 15 C -0.114 4.114 16 C 0.061 3.939 17 N -0.541 5.541 18 H 0.419 0.581 19 C -0.148 4.148 20 C 0.173 3.827 21 N -0.585 5.585 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.899 5.899 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.389 0.611 36 H 0.157 0.843 37 H 0.172 0.828 38 H 0.141 0.859 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.023 0.977 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -7.720 23.221 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.047 3.953 6 H 0.108 0.892 7 N -0.370 5.370 8 C 0.367 3.633 9 O -0.394 6.394 10 C -0.099 4.099 11 C -0.106 4.106 12 C -0.338 4.338 13 S 0.389 5.611 14 C -0.327 4.327 15 C -0.147 4.147 16 C -0.057 4.057 17 N -0.144 5.144 18 H 0.257 0.743 19 C -0.188 4.188 20 C 0.047 3.953 21 N -0.306 5.306 22 C -0.384 4.384 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.543 5.543 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.221 0.779 36 H 0.175 0.825 37 H 0.189 0.811 38 H 0.158 0.842 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.041 0.959 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.421 -9.206 22.878 24.780 hybrid contribution 2.182 2.060 -0.832 3.114 sum 4.603 -7.147 22.046 23.628 Atomic orbital electron populations 1.22312 0.98608 1.01174 1.00164 1.20433 0.91849 0.95092 0.86428 0.91578 1.22316 1.01128 0.94022 0.99805 1.21200 1.00099 0.91313 0.82695 0.89246 1.46269 1.34250 1.26982 1.29529 1.16958 0.83135 0.80633 0.82572 1.90895 1.27376 1.65519 1.55627 1.20536 0.93579 0.99635 0.96171 1.20432 1.00897 0.95696 0.93611 1.22694 1.04336 1.02661 1.04087 1.83937 1.30346 1.27542 1.19304 1.25227 1.02597 0.99830 1.05065 1.18896 1.01795 1.00017 0.94000 1.18344 1.00174 0.93367 0.93825 1.41977 1.27442 1.23945 1.21052 0.74312 1.22588 1.00135 0.99310 0.96754 1.20756 0.97845 0.82868 0.93819 1.44175 1.63765 1.03449 1.19238 1.19161 1.22140 1.10318 0.86760 0.91633 1.25053 0.97677 0.99991 0.96803 1.70033 1.31614 1.35658 1.17010 0.86302 0.81344 0.78449 0.80722 1.21496 1.21772 1.20473 0.93146 0.94477 0.92514 0.92558 0.91917 0.77856 0.82531 0.81073 0.84181 0.92690 0.92737 0.89190 0.95925 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.03 37.16 0.34 -2.72 16 2 C 0.17 3.33 3.29 -67.60 -0.22 3.11 16 3 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 4 C -0.13 -2.10 5.02 -26.61 -0.13 -2.24 16 5 C 0.15 2.49 2.21 -67.88 -0.15 2.34 16 6 H 0.09 1.68 5.92 -51.93 -0.31 1.37 16 7 N -0.72 -9.69 5.07 -55.13 -0.28 -9.97 16 8 C 0.58 8.70 7.74 -12.95 -0.10 8.60 16 9 O -0.52 -9.77 16.52 5.16 0.09 -9.69 16 10 C 0.02 0.20 7.01 -82.10 -0.58 -0.38 16 11 C -0.08 -0.96 10.60 -38.95 -0.41 -1.38 16 12 C -0.22 -2.49 7.26 -38.67 -0.28 -2.77 16 13 S 0.13 1.13 23.31 -107.50 -2.51 -1.37 16 14 C -0.19 -1.35 11.13 28.86 0.32 -1.03 16 15 C -0.11 -0.90 10.16 -40.84 -0.42 -1.31 16 16 C 0.06 0.63 7.67 -84.01 -0.64 -0.01 16 17 N -0.54 -5.27 6.14 -7.34 -0.05 -5.32 16 18 H 0.42 2.82 8.14 -40.82 -0.33 2.49 16 19 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 20 C 0.17 4.09 4.89 -3.71 -0.02 4.07 16 21 N -0.58 -13.94 2.70 -164.78 -0.45 -14.39 16 22 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 23 H 0.07 1.70 7.89 -52.49 -0.41 1.29 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 25 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 26 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.05 0.98 5.72 -51.93 -0.30 0.68 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.39 3.94 7.68 -40.82 -0.31 3.62 16 36 H 0.16 1.91 8.06 -52.48 -0.42 1.48 16 37 H 0.17 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.09 2.40 6.04 -51.93 -0.31 2.08 16 42 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 360.17 15.07 5.43 5.43 Total: -1.00 -31.73 360.17 -10.57 -42.29 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.72 Total: 5.41 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -2.68 Total: -3.59 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.15 Total: -54.83 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.73 -10.57 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947889918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.291 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds