Wall clock time and date at job start Tue Mar 31 2020 18:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.70205 * 2 1 4 4 C 1.53190 * 109.58660 * 120.35645 * 2 1 3 5 5 C 1.53045 * 109.31275 * 65.15051 * 4 2 1 6 6 H 1.08998 * 109.45188 * 301.35145 * 5 4 2 7 7 N 1.46507 * 109.45929 * 181.38484 * 5 4 2 8 8 C 1.34777 * 119.99484 * 154.92994 * 7 5 4 9 9 O 1.21728 * 120.00743 * 0.02562 * 8 7 5 10 10 C 1.46457 * 119.99655 * 179.97438 * 8 7 5 11 11 C 1.37456 * 125.80788 * 179.97438 * 10 8 7 12 12 C 1.40661 * 107.55723 * 180.02562 * 11 10 8 13 13 S 1.76019 * 142.39363 * 180.02562 * 12 11 10 14 14 C 1.75594 * 91.30956 * 179.97438 * 13 12 11 15 15 C 1.32772 * 110.47152 * 0.24268 * 14 13 12 16 16 C 1.38237 * 108.03183 * 0.02562 * 12 11 10 17 17 N 1.37928 * 125.80362 * 0.02562 * 10 8 7 18 18 H 0.97000 * 125.68140 * 359.95518 * 17 10 8 19 19 C 1.53036 * 109.54001 * 61.36614 * 5 4 2 20 20 C 1.53190 * 109.31129 * 298.63725 * 19 5 4 21 21 N 1.46925 * 108.77867 * 54.63361 * 20 19 5 22 22 C 1.36934 * 120.63183 * 126.41283 * 21 20 19 23 23 H 1.07998 * 120.00367 * 207.67471 * 22 21 20 24 24 C 1.38812 * 120.00212 * 27.67889 * 22 21 20 25 25 N 1.31619 * 119.99740 * 17.35384 * 24 22 21 26 26 Si 1.86802 * 120.00360 * 197.35341 * 24 22 21 27 27 H 1.48497 * 109.46977 * 89.99467 * 26 24 22 28 28 H 1.48494 * 109.47088 * 209.99863 * 26 24 22 29 29 H 1.48505 * 109.46840 * 329.99879 * 26 24 22 30 30 H 1.09004 * 109.47309 * 180.35262 * 1 2 3 31 31 H 1.09001 * 109.47033 * 300.35158 * 1 2 3 32 32 H 1.09002 * 109.46976 * 60.35246 * 1 2 3 33 33 H 1.08997 * 109.50010 * 305.20023 * 4 2 1 34 34 H 1.08997 * 109.49892 * 185.10059 * 4 2 1 35 35 H 0.96992 * 119.99777 * 334.93271 * 7 5 4 36 36 H 1.08003 * 126.21998 * 0.02599 * 11 10 8 37 37 H 1.08005 * 124.76594 * 179.97438 * 14 13 12 38 38 H 1.08002 * 122.15772 * 179.75387 * 15 14 13 39 39 H 1.09005 * 109.49635 * 58.58247 * 19 5 4 40 40 H 1.09000 * 109.49836 * 178.68142 * 19 5 4 41 41 H 1.09004 * 109.58714 * 174.41884 * 20 19 5 42 42 H 1.08998 * 109.58885 * 294.84387 * 20 19 5 43 43 H 0.96998 * 119.99912 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 1.6414 -2.2041 1.1701 6 1 0.5565 -2.2814 1.0992 7 7 2.1023 -2.8979 2.3754 8 6 1.4741 -4.0153 2.7915 9 8 0.5240 -4.4484 2.1658 10 6 1.9352 -4.7091 3.9961 11 6 1.3854 -5.8521 4.5259 12 6 2.1229 -6.1835 5.6769 13 16 2.2256 -7.3691 6.9739 14 6 3.6038 -6.5393 7.6778 15 6 3.9147 -5.4655 6.9615 16 6 3.1163 -5.2356 5.8363 17 7 2.9943 -4.3262 4.7923 18 1 3.5597 -3.5514 4.6476 19 6 2.2799 -2.8465 -0.0635 20 6 1.7691 -2.1411 -1.3237 21 7 2.0226 -0.6996 -1.1945 22 6 2.7044 -0.0210 -2.1690 23 1 3.2696 0.8639 -1.9161 24 6 2.6692 -0.4703 -3.4819 25 7 1.7365 -1.3172 -3.8627 26 14 3.9455 0.1271 -4.7082 27 1 5.1162 -0.7862 -4.6886 28 1 3.3535 0.1441 -6.0699 29 1 4.3812 1.4983 -4.3406 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.6075 -0.2785 2.1368 34 1 3.1297 -0.6504 1.2913 35 1 2.8595 -2.5529 2.8738 36 1 0.5408 -6.3967 4.1303 37 1 4.1227 -6.8554 8.5707 38 1 4.7330 -4.8133 7.2289 39 1 3.3639 -2.7475 -0.0053 40 1 2.0122 -3.9023 -0.1036 41 1 2.2944 -2.5275 -2.1971 42 1 0.6986 -2.3156 -1.4317 43 1 1.7120 -1.6315 -4.7801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947889918.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:01 Heat of formation + Delta-G solvation = 32.676315 kcal Electronic energy + Delta-G solvation = -25917.426365 eV Core-core repulsion = 22282.453932 eV Total energy + Delta-G solvation = -3634.972433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.41935 -40.80014 -39.25628 -36.26198 -36.12062 -34.35899 -32.58550 -32.02277 -31.44635 -29.37703 -28.38480 -26.25050 -24.79751 -23.91684 -23.62201 -22.67077 -21.45780 -21.16530 -20.12576 -19.56842 -18.66408 -17.51342 -17.40985 -16.64291 -16.43587 -16.38293 -15.78145 -15.52896 -15.41046 -15.18874 -15.01038 -14.83177 -14.60986 -14.29948 -14.17758 -13.94326 -13.80111 -13.17721 -12.93305 -12.82583 -12.67872 -12.57186 -12.54938 -12.32884 -12.06286 -12.00852 -11.81615 -11.74347 -11.53024 -11.38251 -11.01584 -10.77747 -10.57065 -10.15987 -9.11591 -8.69872 -8.65547 -7.86001 -5.30926 -0.25770 0.58400 0.84838 1.16844 1.47075 1.48491 1.57062 1.73083 1.78540 2.06976 2.20325 2.51528 3.29569 3.59138 3.67624 3.83101 3.84740 3.99403 4.05051 4.25748 4.38772 4.42360 4.50278 4.53727 4.69330 4.71573 4.76523 4.83374 4.84901 4.95000 5.05456 5.08853 5.09768 5.15718 5.31564 5.39222 5.41749 5.43052 5.53550 5.56497 5.68358 5.75255 6.28937 6.40541 6.47430 7.04074 7.15433 7.87426 8.39404 9.20606 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.002299 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.985734 B =12178.700919 C =12319.213016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.072 0.928 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.068 0.932 7 N -0.704 5.704 8 C 0.585 3.415 9 O -0.566 6.566 10 C -0.002 4.002 11 C -0.088 4.088 12 C -0.253 4.253 13 S 0.125 5.875 14 C -0.168 4.168 15 C -0.127 4.127 16 C 0.072 3.928 17 N -0.528 5.528 18 H 0.433 0.567 19 C -0.133 4.133 20 C 0.184 3.816 21 N -0.599 5.599 22 C -0.256 4.256 23 H 0.073 0.927 24 C -0.053 4.053 25 N -0.936 5.936 26 Si 0.965 3.035 27 H -0.288 1.288 28 H -0.300 1.300 29 H -0.265 1.265 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.410 0.590 36 H 0.148 0.852 37 H 0.208 0.792 38 H 0.172 0.828 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.053 0.947 42 H -0.008 1.008 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 -6.799 26.940 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.086 0.914 7 N -0.355 5.355 8 C 0.372 3.628 9 O -0.445 6.445 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.373 4.373 13 S 0.385 5.615 14 C -0.304 4.304 15 C -0.160 4.160 16 C -0.049 4.049 17 N -0.132 5.132 18 H 0.275 0.725 19 C -0.173 4.173 20 C 0.057 3.943 21 N -0.321 5.321 22 C -0.386 4.386 23 H 0.091 0.909 24 C -0.249 4.249 25 N -0.583 5.583 26 Si 0.794 3.206 27 H -0.215 1.215 28 H -0.227 1.227 29 H -0.190 1.190 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.165 0.835 37 H 0.225 0.775 38 H 0.189 0.811 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.010 0.990 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.962 -8.232 26.648 28.329 hybrid contribution 1.395 1.706 -1.835 2.868 sum 6.357 -6.526 24.813 26.433 Atomic orbital electron populations 1.22205 0.98217 1.00360 1.00620 1.20712 0.92183 0.95566 0.86207 0.90982 1.22147 1.02047 0.92470 0.99051 1.20817 0.98647 0.92159 0.82640 0.91373 1.45895 1.34695 1.26413 1.28447 1.17207 0.82352 0.80417 0.82778 1.90873 1.29559 1.66782 1.57303 1.19992 0.95350 1.00077 0.96225 1.20528 1.00987 0.95952 0.94442 1.22933 1.05126 1.04464 1.04760 1.83988 1.31646 1.27324 1.18582 1.25738 1.00890 0.98492 1.05289 1.19212 1.02578 1.00999 0.93177 1.18825 0.99680 0.92467 0.93894 1.41829 1.26687 1.24304 1.20366 0.72538 1.22340 1.00363 0.98350 0.96281 1.20419 0.95553 0.83711 0.94569 1.44382 1.64102 1.03551 1.20089 1.19539 1.21669 1.10078 0.87332 0.90913 1.25810 0.99510 1.00825 0.98721 1.70205 1.33612 1.37583 1.16863 0.85295 0.78824 0.78493 0.78009 1.21460 1.22701 1.18959 0.94655 0.90655 0.95260 0.88878 0.90552 0.75393 0.83458 0.77510 0.81098 0.92024 0.93773 0.92834 0.99009 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.74 9.03 71.98 0.65 -5.09 16 2 C 0.16 6.07 3.29 44.97 0.15 6.21 16 3 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 4 C -0.12 -3.39 5.02 30.67 0.15 -3.24 16 5 C 0.16 5.23 2.21 45.02 0.10 5.33 16 6 H 0.07 2.58 5.92 -2.39 -0.01 2.56 16 7 N -0.70 -17.76 5.07 -446.55 -2.27 -20.03 16 8 C 0.58 17.38 7.74 86.38 0.67 18.05 16 9 O -0.57 -22.11 16.52 -4.44 -0.07 -22.19 16 10 C 0.00 -0.04 7.01 40.14 0.28 0.24 16 11 C -0.09 -2.26 10.60 22.68 0.24 -2.02 16 12 C -0.25 -5.51 7.26 22.86 0.17 -5.34 16 13 S 0.13 1.96 23.31 -56.49 -1.32 0.65 16 14 C -0.17 -1.69 11.13 66.64 0.74 -0.95 16 15 C -0.13 -1.49 10.16 21.49 0.22 -1.27 16 16 C 0.07 1.29 7.67 38.40 0.29 1.58 16 17 N -0.53 -9.08 6.14 -177.14 -1.09 -10.16 16 18 H 0.43 4.43 8.14 -92.71 -0.75 3.68 16 19 C -0.13 -5.24 5.65 30.67 0.17 -5.07 16 20 C 0.18 9.09 4.89 86.36 0.42 9.51 16 21 N -0.60 -28.90 2.70 -675.23 -1.82 -30.72 16 22 C -0.26 -13.64 9.59 84.03 0.81 -12.83 16 23 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 24 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 25 N -0.94 -56.10 11.19 21.65 0.24 -55.86 16 26 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 29 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 30 H 0.03 1.40 5.72 -2.38 -0.01 1.38 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.41 7.00 7.68 -92.71 -0.71 6.29 16 36 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.21 0.56 8.06 -2.91 -0.02 0.53 16 38 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.05 3.02 6.04 -2.39 -0.01 3.00 16 42 H -0.01 -0.44 7.50 -2.39 -0.02 -0.46 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.22 360.17 0.78 -72.44 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.41 Total: 16.60 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.48 Total: 2.57 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.94 Total: -116.77 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.07 Total: -22.19 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.32 Total: 0.65 kcal Total: -73.22 0.78 -72.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947889918.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.119 kcal (2) G-P(sol) polarization free energy of solvation -73.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds