Wall clock time and date at job start Tue Mar 31 2020 18:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.58210 * 2 1 4 4 C 1.53187 * 109.70577 * 239.63997 * 2 1 3 5 5 C 1.53043 * 109.31209 * 185.50978 * 4 2 1 6 6 H 1.08996 * 109.45585 * 301.34510 * 5 4 2 7 7 N 1.46500 * 109.45710 * 181.38686 * 5 4 2 8 8 C 1.34780 * 120.00111 * 155.00206 * 7 5 4 9 9 O 1.21730 * 119.99450 * 359.97438 * 8 7 5 10 10 C 1.46412 * 120.00134 * 179.97438 * 8 7 5 11 11 C 1.35778 * 124.95758 * 179.97438 * 10 8 7 12 12 C 1.38868 * 115.18639 * 179.97438 * 11 10 8 13 13 N 1.39738 * 139.91957 * 179.97438 * 12 11 10 14 14 H 0.97004 * 125.63313 * 359.96238 * 13 12 11 15 15 C 1.36216 * 108.73948 * 179.97438 * 13 12 11 16 16 C 1.34503 * 109.29617 * 359.97438 * 15 13 12 17 17 C 1.38245 * 113.39286 * 359.97438 * 12 11 10 18 18 S 1.75613 * 124.95764 * 359.69028 * 10 8 7 19 19 C 1.53037 * 109.53770 * 61.36398 * 5 4 2 20 20 C 1.53614 * 109.24280 * 298.51058 * 19 5 4 21 21 N 1.46930 * 108.54610 * 54.86157 * 20 19 5 22 22 C 1.36927 * 120.63544 * 126.36868 * 21 20 19 23 23 H 1.08003 * 120.00290 * 210.78974 * 22 21 20 24 24 C 1.38814 * 120.00316 * 30.78741 * 22 21 20 25 25 N 1.31615 * 120.00300 * 197.60469 * 24 22 21 26 26 Si 1.86800 * 119.99706 * 17.60440 * 24 22 21 27 27 H 1.48505 * 109.47278 * 273.09750 * 26 24 22 28 28 H 1.48507 * 109.47050 * 33.09552 * 26 24 22 29 29 H 1.48498 * 109.47441 * 153.09168 * 26 24 22 30 30 H 1.08999 * 109.47106 * 299.72045 * 1 2 3 31 31 H 1.08993 * 109.46897 * 59.72318 * 1 2 3 32 32 H 1.08999 * 109.46725 * 179.72105 * 1 2 3 33 33 H 1.09007 * 109.49822 * 305.45949 * 4 2 1 34 34 H 1.09002 * 109.49972 * 65.55168 * 4 2 1 35 35 H 0.97000 * 120.00099 * 334.99348 * 7 5 4 36 36 H 1.08001 * 122.40400 * 359.97438 * 11 10 8 37 37 H 1.07998 * 125.34958 * 180.02562 * 15 13 12 38 38 H 1.07999 * 126.08073 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.49451 * 58.58854 * 19 5 4 40 40 H 1.08998 * 109.49289 * 178.68006 * 19 5 4 41 41 H 1.09003 * 109.74249 * 295.11930 * 20 19 5 42 42 H 1.09004 * 109.66641 * 174.55346 * 20 19 5 43 43 H 0.97005 * 119.99839 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5707 -0.8444 -1.1672 6 1 4.0072 0.1519 -1.0963 7 7 4.0712 -1.5117 -2.3715 8 6 5.3355 -1.2958 -2.7855 9 8 6.0614 -0.5460 -2.1589 10 6 5.8359 -1.9632 -3.9888 11 6 7.0874 -1.8187 -4.4951 12 6 7.3465 -2.5486 -5.6477 13 7 8.3834 -2.7821 -6.5549 14 1 9.2693 -2.3891 -6.5140 15 6 7.9447 -3.6526 -7.5064 16 6 6.6683 -3.9883 -7.2470 17 6 6.2681 -3.3004 -6.0754 18 16 4.9072 -3.0728 -4.9839 19 6 3.9602 -1.6607 0.0673 20 6 3.4660 -0.9374 1.3292 21 7 2.0225 -0.6980 1.1955 22 6 1.1534 -1.1124 2.1691 23 1 0.1461 -1.4005 1.9068 24 6 1.5669 -1.1622 3.4933 25 7 0.8846 -1.8683 4.3697 26 14 3.0919 -0.2271 4.0312 27 1 4.2933 -1.0729 3.8150 28 1 3.2147 1.0200 3.2344 29 1 2.9803 0.1151 5.4719 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6081 -1.7258 -1.2904 34 1 1.7689 -0.1674 -2.1364 35 1 3.4927 -2.1090 -2.8709 36 1 7.8282 -1.1819 -4.0345 37 1 8.5300 -4.0166 -8.3378 38 1 6.0570 -4.6620 -7.8291 39 1 3.5037 -2.6488 0.0089 40 1 5.0447 -1.7624 0.1088 41 1 3.9860 0.0147 1.4354 42 1 3.6538 -1.5583 2.2052 43 1 1.1739 -1.9034 5.2950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947974556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:07 Heat of formation + Delta-G solvation = 59.749306 kcal Electronic energy + Delta-G solvation = -25787.659670 eV Core-core repulsion = 22153.861209 eV Total energy + Delta-G solvation = -3633.798460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49812 -39.83385 -37.93642 -35.35237 -34.65974 -32.38220 -31.71683 -31.25200 -30.31316 -28.35050 -26.54366 -24.99947 -23.86988 -22.62579 -22.03372 -21.15313 -20.43353 -20.15038 -19.18375 -18.66121 -17.00508 -16.36454 -16.09724 -15.73021 -15.22808 -15.17694 -14.63851 -14.58404 -14.52354 -13.95397 -13.79875 -13.72689 -13.34874 -13.20281 -13.04846 -12.47272 -12.24620 -11.97551 -11.81102 -11.74261 -11.32762 -11.18102 -11.12051 -11.00145 -10.57131 -10.37180 -10.15717 -10.11550 -10.00884 -9.98832 -9.66218 -9.40718 -8.87939 -8.55967 -8.40239 -7.94373 -6.89315 -5.90492 -3.30368 0.31710 1.18978 1.73020 2.13463 2.32683 2.62866 3.19532 3.24266 3.37320 3.52918 3.56629 4.52820 4.56402 4.57561 4.69347 4.90981 4.99237 5.15096 5.18281 5.32436 5.42371 5.47619 5.63095 5.64275 5.72246 5.79232 6.01007 6.05181 6.11103 6.16387 6.24028 6.29358 6.39729 6.40343 6.44108 6.53158 6.66155 6.72561 6.82680 6.98797 7.03883 7.08418 7.53221 8.03248 8.19981 8.39748 8.98163 9.76625 10.15004 11.25142 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.002589 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.006243 B =10812.478308 C =11297.418549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.136 4.136 5 C 0.151 3.849 6 H 0.085 0.915 7 N -0.717 5.717 8 C 0.589 3.411 9 O -0.531 6.531 10 C -0.232 4.232 11 C -0.034 4.034 12 C 0.024 3.976 13 N -0.557 5.557 14 H 0.420 0.580 15 C 0.057 3.943 16 C -0.172 4.172 17 C -0.188 4.188 18 S 0.165 5.835 19 C -0.141 4.141 20 C 0.128 3.872 21 N -0.603 5.603 22 C -0.258 4.258 23 H 0.091 0.909 24 C 0.025 3.975 25 N -0.911 5.911 26 Si 0.883 3.117 27 H -0.286 1.286 28 H -0.272 1.272 29 H -0.305 1.305 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.395 0.605 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.147 0.853 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.026 0.974 42 H 0.078 0.922 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 -3.178 -25.913 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.176 4.176 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.366 5.366 8 C 0.374 3.626 9 O -0.409 6.409 10 C -0.352 4.352 11 C -0.070 4.070 12 C -0.090 4.090 13 N -0.158 5.158 14 H 0.257 0.743 15 C -0.077 4.077 16 C -0.201 4.201 17 C -0.310 4.310 18 S 0.428 5.572 19 C -0.181 4.181 20 C 0.001 3.999 21 N -0.328 5.328 22 C -0.386 4.386 23 H 0.108 0.892 24 C -0.174 4.174 25 N -0.554 5.554 26 Si 0.714 3.286 27 H -0.214 1.214 28 H -0.197 1.197 29 H -0.233 1.233 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.229 0.771 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.249 -3.154 -25.146 27.727 hybrid contribution 2.625 0.772 0.025 2.736 sum 13.874 -2.382 -25.120 28.796 Atomic orbital electron populations 1.21794 0.94903 1.01983 1.00600 1.20381 0.93783 0.93339 0.85677 0.95051 1.22398 0.93246 1.02226 0.99757 1.21059 0.94594 0.96685 0.82827 0.89661 1.46135 1.12687 1.48553 1.29241 1.16847 0.82178 0.80995 0.82551 1.90843 1.56523 1.37223 1.56311 1.23836 0.98889 1.08957 1.03509 1.19240 0.96278 0.98780 0.92705 1.17997 0.89212 1.05173 0.96579 1.41910 1.12821 1.39286 1.21812 0.74261 1.21876 0.95850 0.95167 0.94805 1.20142 0.95607 1.06388 0.97984 1.23203 0.97976 1.06661 1.03198 1.83750 1.11659 1.43639 1.18189 1.22474 1.00134 0.99990 0.95527 1.21455 0.85097 0.97200 0.96102 1.44506 1.01868 1.65765 1.20627 1.18902 0.96604 1.37797 0.85297 0.89157 1.25364 0.97594 0.98684 0.95789 1.69799 1.41166 1.40873 1.03589 0.86994 0.83384 0.81630 0.76616 1.21398 1.19700 1.23289 0.91520 0.94070 0.92344 0.91209 0.92063 0.77090 0.83322 0.80483 0.83489 0.91478 0.92356 0.95574 0.90429 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.97 37.16 0.30 -2.13 16 2 C 0.18 3.37 3.49 -67.59 -0.24 3.13 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.14 -2.17 4.85 -26.61 -0.13 -2.30 16 5 C 0.15 2.52 2.41 -67.89 -0.16 2.36 16 6 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 7 N -0.72 -10.22 5.07 -55.15 -0.28 -10.50 16 8 C 0.59 9.04 7.74 -12.97 -0.10 8.94 16 9 O -0.53 -9.93 16.43 5.16 0.08 -9.84 16 10 C -0.23 -2.96 6.38 -37.17 -0.24 -3.20 16 11 C -0.03 -0.40 9.88 -40.23 -0.40 -0.80 16 12 C 0.02 0.25 7.67 -84.02 -0.64 -0.40 16 13 N -0.56 -3.77 6.21 -10.90 -0.07 -3.84 16 14 H 0.42 1.56 8.96 -40.82 -0.37 1.19 16 15 C 0.06 0.32 11.85 -16.92 -0.20 0.12 16 16 C -0.17 -1.35 10.85 -39.61 -0.43 -1.78 16 17 C -0.19 -1.96 7.31 -38.28 -0.28 -2.24 16 18 S 0.16 1.73 22.29 -107.50 -2.40 -0.67 16 19 C -0.14 -2.66 5.67 -26.39 -0.15 -2.81 16 20 C 0.13 2.86 4.22 -3.49 -0.01 2.84 16 21 N -0.60 -14.08 2.72 -164.51 -0.45 -14.53 16 22 C -0.26 -7.00 8.99 -15.06 -0.14 -7.14 16 23 H 0.09 2.58 6.47 -52.48 -0.34 2.24 16 24 C 0.02 0.71 5.26 -17.43 -0.09 0.62 16 25 N -0.91 -27.83 13.97 55.49 0.78 -27.06 16 26 Si 0.88 22.78 24.33 -169.99 -4.14 18.64 16 27 H -0.29 -7.17 6.42 56.52 0.36 -6.81 16 28 H -0.27 -6.96 6.89 56.52 0.39 -6.57 16 29 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 30 H 0.07 1.31 7.64 -51.93 -0.40 0.92 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.09 7.43 -51.93 -0.39 0.70 16 33 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 4.71 7.66 -40.82 -0.31 4.40 16 36 H 0.15 1.65 8.00 -52.49 -0.42 1.23 16 37 H 0.18 0.30 8.06 -52.49 -0.42 -0.13 16 38 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.03 0.60 7.14 -51.93 -0.37 0.23 16 42 H 0.08 1.90 4.60 -51.93 -0.24 1.66 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -34.04 354.74 -9.83 -43.87 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.79 Total: 3.35 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -2.91 Total: -4.77 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.02 Total: -55.93 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.04 -9.83 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.618 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds