Wall clock time and date at job start Tue Mar 31 2020 18:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.58210 * 2 1 4 4 C 1.53187 * 109.70577 * 239.63997 * 2 1 3 5 5 C 1.53043 * 109.31209 * 185.50978 * 4 2 1 6 6 H 1.08996 * 109.45585 * 301.34510 * 5 4 2 7 7 N 1.46500 * 109.45710 * 181.38686 * 5 4 2 8 8 C 1.34780 * 120.00111 * 155.00206 * 7 5 4 9 9 O 1.21730 * 119.99450 * 359.97438 * 8 7 5 10 10 C 1.46412 * 120.00134 * 179.97438 * 8 7 5 11 11 C 1.35778 * 124.95758 * 179.97438 * 10 8 7 12 12 C 1.38868 * 115.18639 * 179.97438 * 11 10 8 13 13 N 1.39738 * 139.91957 * 179.97438 * 12 11 10 14 14 H 0.97004 * 125.63313 * 359.96238 * 13 12 11 15 15 C 1.36216 * 108.73948 * 179.97438 * 13 12 11 16 16 C 1.34503 * 109.29617 * 359.97438 * 15 13 12 17 17 C 1.38245 * 113.39286 * 359.97438 * 12 11 10 18 18 S 1.75613 * 124.95764 * 359.69028 * 10 8 7 19 19 C 1.53037 * 109.53770 * 61.36398 * 5 4 2 20 20 C 1.53614 * 109.24280 * 298.51058 * 19 5 4 21 21 N 1.46930 * 108.54610 * 54.86157 * 20 19 5 22 22 C 1.36927 * 120.63544 * 126.36868 * 21 20 19 23 23 H 1.08003 * 120.00290 * 210.78974 * 22 21 20 24 24 C 1.38814 * 120.00316 * 30.78741 * 22 21 20 25 25 N 1.31615 * 120.00300 * 197.60469 * 24 22 21 26 26 Si 1.86800 * 119.99706 * 17.60440 * 24 22 21 27 27 H 1.48505 * 109.47278 * 273.09750 * 26 24 22 28 28 H 1.48507 * 109.47050 * 33.09552 * 26 24 22 29 29 H 1.48498 * 109.47441 * 153.09168 * 26 24 22 30 30 H 1.08999 * 109.47106 * 299.72045 * 1 2 3 31 31 H 1.08993 * 109.46897 * 59.72318 * 1 2 3 32 32 H 1.08999 * 109.46725 * 179.72105 * 1 2 3 33 33 H 1.09007 * 109.49822 * 305.45949 * 4 2 1 34 34 H 1.09002 * 109.49972 * 65.55168 * 4 2 1 35 35 H 0.97000 * 120.00099 * 334.99348 * 7 5 4 36 36 H 1.08001 * 122.40400 * 359.97438 * 11 10 8 37 37 H 1.07998 * 125.34958 * 180.02562 * 15 13 12 38 38 H 1.07999 * 126.08073 * 180.02562 * 16 15 13 39 39 H 1.09007 * 109.49451 * 58.58854 * 19 5 4 40 40 H 1.08998 * 109.49289 * 178.68006 * 19 5 4 41 41 H 1.09003 * 109.74249 * 295.11930 * 20 19 5 42 42 H 1.09004 * 109.66641 * 174.55346 * 20 19 5 43 43 H 0.97005 * 119.99839 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0466 -0.7289 -1.2444 5 6 3.5707 -0.8444 -1.1672 6 1 4.0072 0.1519 -1.0963 7 7 4.0712 -1.5117 -2.3715 8 6 5.3355 -1.2958 -2.7855 9 8 6.0614 -0.5460 -2.1589 10 6 5.8359 -1.9632 -3.9888 11 6 7.0874 -1.8187 -4.4951 12 6 7.3465 -2.5486 -5.6477 13 7 8.3834 -2.7821 -6.5549 14 1 9.2693 -2.3891 -6.5140 15 6 7.9447 -3.6526 -7.5064 16 6 6.6683 -3.9883 -7.2470 17 6 6.2681 -3.3004 -6.0754 18 16 4.9072 -3.0728 -4.9839 19 6 3.9602 -1.6607 0.0673 20 6 3.4660 -0.9374 1.3292 21 7 2.0225 -0.6980 1.1955 22 6 1.1534 -1.1124 2.1691 23 1 0.1461 -1.4005 1.9068 24 6 1.5669 -1.1622 3.4933 25 7 0.8846 -1.8683 4.3697 26 14 3.0919 -0.2271 4.0312 27 1 4.2933 -1.0729 3.8150 28 1 3.2147 1.0200 3.2344 29 1 2.9803 0.1151 5.4719 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5181 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.6081 -1.7258 -1.2904 34 1 1.7689 -0.1674 -2.1364 35 1 3.4927 -2.1090 -2.8709 36 1 7.8282 -1.1819 -4.0345 37 1 8.5300 -4.0166 -8.3378 38 1 6.0570 -4.6620 -7.8291 39 1 3.5037 -2.6488 0.0089 40 1 5.0447 -1.7624 0.1088 41 1 3.9860 0.0147 1.4354 42 1 3.6538 -1.5583 2.2052 43 1 1.1739 -1.9034 5.2950 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947974556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:06 Heat of formation + Delta-G solvation = 36.095088 kcal Electronic energy + Delta-G solvation = -25788.685394 eV Core-core repulsion = 22153.861209 eV Total energy + Delta-G solvation = -3634.824184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12891 -41.09480 -39.46986 -36.38877 -35.92916 -34.25551 -33.31800 -32.06514 -31.78002 -29.27227 -28.02856 -26.58087 -25.07665 -24.25686 -22.99573 -22.02055 -21.59840 -21.40681 -20.54128 -19.41849 -18.46232 -17.85249 -17.50602 -16.85906 -16.48122 -16.35737 -16.25441 -15.52034 -15.49141 -15.37586 -15.09728 -14.89203 -14.77658 -14.38293 -14.31976 -13.88954 -13.67402 -13.50659 -12.97795 -12.89196 -12.74468 -12.68619 -12.51562 -12.24186 -12.04771 -11.97594 -11.87929 -11.76632 -11.54100 -11.43315 -11.12569 -10.70842 -10.67415 -10.17178 -9.14373 -8.87087 -8.62508 -8.12468 -5.47068 -0.52207 0.41552 0.94473 1.29355 1.36690 1.39749 1.47621 1.72482 1.87688 2.13395 2.28184 2.43137 3.07807 3.29509 3.64911 3.79838 3.91526 3.95442 4.16216 4.17798 4.21379 4.22878 4.43344 4.54685 4.56414 4.59811 4.68771 4.75246 4.83218 4.92522 4.97177 4.99423 5.04935 5.05543 5.06668 5.18559 5.40008 5.47684 5.55769 5.57940 5.79133 5.94613 6.22769 6.39958 6.60270 6.95080 7.05617 7.66073 8.08158 9.06891 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025265 B = 0.002589 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.006243 B =10812.478308 C =11297.418549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.164 3.836 3 H 0.036 0.964 4 C -0.123 4.123 5 C 0.160 3.840 6 H 0.073 0.927 7 N -0.706 5.706 8 C 0.590 3.410 9 O -0.573 6.573 10 C -0.269 4.269 11 C -0.025 4.025 12 C -0.007 4.007 13 N -0.547 5.547 14 H 0.434 0.566 15 C 0.090 3.910 16 C -0.199 4.199 17 C -0.197 4.197 18 S 0.180 5.820 19 C -0.130 4.130 20 C 0.124 3.876 21 N -0.615 5.615 22 C -0.232 4.232 23 H 0.072 0.928 24 C -0.032 4.032 25 N -0.957 5.957 26 Si 0.934 3.066 27 H -0.279 1.279 28 H -0.269 1.269 29 H -0.312 1.312 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.409 0.591 36 H 0.146 0.854 37 H 0.226 0.774 38 H 0.165 0.835 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.024 0.976 42 H 0.053 0.947 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 -3.603 -30.148 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.054 0.946 4 C -0.162 4.162 5 C 0.056 3.944 6 H 0.091 0.909 7 N -0.356 5.356 8 C 0.378 3.622 9 O -0.455 6.455 10 C -0.389 4.389 11 C -0.061 4.061 12 C -0.119 4.119 13 N -0.149 5.149 14 H 0.275 0.725 15 C -0.045 4.045 16 C -0.228 4.228 17 C -0.320 4.320 18 S 0.443 5.557 19 C -0.170 4.170 20 C -0.001 4.001 21 N -0.340 5.340 22 C -0.362 4.362 23 H 0.089 0.911 24 C -0.227 4.227 25 N -0.604 5.604 26 Si 0.765 3.235 27 H -0.206 1.206 28 H -0.194 1.194 29 H -0.241 1.241 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.245 0.755 36 H 0.163 0.837 37 H 0.243 0.757 38 H 0.183 0.817 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.758 -3.566 -29.433 32.277 hybrid contribution 2.240 0.837 1.079 2.623 sum 14.998 -2.729 -28.355 32.193 Atomic orbital electron populations 1.21722 0.93891 1.01543 1.01405 1.20694 0.94738 0.93539 0.85157 0.94637 1.22233 0.92208 1.02538 0.99208 1.20783 0.95165 0.95717 0.82748 0.90921 1.45879 1.12788 1.48530 1.28434 1.17163 0.81836 0.80306 0.82885 1.90810 1.57531 1.39229 1.57911 1.23524 1.00084 1.11358 1.03908 1.19345 0.95831 0.98060 0.92901 1.17950 0.90682 1.06102 0.97213 1.42059 1.12907 1.38969 1.21009 0.72506 1.22703 0.95276 0.92255 0.94266 1.20570 0.96997 1.07479 0.97774 1.23637 0.97775 1.06723 1.03853 1.83515 1.11486 1.42879 1.17833 1.22303 0.99809 0.99803 0.95117 1.21395 0.84775 0.96994 0.96970 1.44674 1.01788 1.66472 1.21114 1.18901 0.96211 1.35148 0.85904 0.91070 1.25888 1.00321 1.00210 0.96279 1.69908 1.43390 1.43307 1.03791 0.86139 0.81162 0.80618 0.75584 1.20592 1.19412 1.24134 0.94026 0.89926 0.93411 0.90813 0.88551 0.75501 0.83670 0.75718 0.81712 0.91544 0.92564 0.95782 0.92839 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 7.97 71.98 0.57 -3.83 16 2 C 0.16 6.07 3.49 44.97 0.16 6.23 16 3 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.12 -3.59 4.85 30.67 0.15 -3.44 16 5 C 0.16 5.13 2.41 45.02 0.11 5.24 16 6 H 0.07 2.57 7.58 -2.39 -0.02 2.56 16 7 N -0.71 -19.33 5.07 -446.61 -2.27 -21.59 16 8 C 0.59 17.99 7.74 86.37 0.67 18.66 16 9 O -0.57 -21.73 16.43 -4.44 -0.07 -21.80 16 10 C -0.27 -6.75 6.38 23.83 0.15 -6.60 16 11 C -0.02 -0.57 9.88 21.85 0.22 -0.35 16 12 C -0.01 -0.12 7.67 38.03 0.29 0.17 16 13 N -0.55 -5.56 6.21 -188.39 -1.17 -6.73 16 14 H 0.43 1.75 8.96 -92.70 -0.83 0.92 16 15 C 0.09 0.61 11.85 83.16 0.99 1.60 16 16 C -0.20 -2.44 10.85 22.25 0.24 -2.19 16 17 C -0.20 -3.68 7.31 23.11 0.17 -3.51 16 18 S 0.18 3.53 22.29 -56.49 -1.26 2.27 16 19 C -0.13 -4.88 5.67 30.81 0.17 -4.70 16 20 C 0.12 5.59 4.22 86.50 0.36 5.95 16 21 N -0.62 -28.67 2.72 -674.38 -1.84 -30.51 16 22 C -0.23 -12.82 8.99 84.04 0.76 -12.07 16 23 H 0.07 4.17 6.47 -2.91 -0.02 4.15 16 24 C -0.03 -1.91 5.26 84.86 0.45 -1.47 16 25 N -0.96 -60.42 13.97 21.65 0.30 -60.12 16 26 Si 0.93 48.33 24.33 68.60 1.67 50.00 16 27 H -0.28 -13.90 6.42 99.48 0.64 -13.26 16 28 H -0.27 -13.60 6.89 99.48 0.69 -12.91 16 29 H -0.31 -16.40 7.11 99.48 0.71 -15.70 16 30 H 0.04 1.62 7.64 -2.39 -0.02 1.60 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.41 9.03 7.66 -92.71 -0.71 8.32 16 36 H 0.15 3.25 8.00 -2.91 -0.02 3.23 16 37 H 0.23 -0.71 8.06 -2.91 -0.02 -0.74 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.02 1.10 7.14 -2.39 -0.02 1.08 16 42 H 0.05 2.65 4.60 -2.38 -0.01 2.64 16 43 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -76.86 354.74 0.25 -76.61 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -0.57 Total: 12.19 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.45 Total: -0.32 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -4.97 Total: -118.95 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.67 Total: 50.00 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.26 Total: 2.27 kcal Total: -76.86 0.25 -76.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.704 kcal (2) G-P(sol) polarization free energy of solvation -76.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds