Wall clock time and date at job start Tue Mar 31 2020 18:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.70178 * 2 1 4 4 C 1.53184 * 109.58839 * 239.64320 * 2 1 3 5 5 C 1.53037 * 109.31354 * 185.57603 * 4 2 1 6 6 H 1.09008 * 109.44821 * 181.37655 * 5 4 2 7 7 N 1.46492 * 109.46136 * 301.34472 * 5 4 2 8 8 C 1.34783 * 120.00186 * 205.06618 * 7 5 4 9 9 O 1.21734 * 119.99465 * 0.02562 * 8 7 5 10 10 C 1.46409 * 120.00123 * 179.97438 * 8 7 5 11 11 C 1.35775 * 124.95582 * 179.72073 * 10 8 7 12 12 C 1.38880 * 115.18489 * 179.78721 * 11 10 8 13 13 N 1.39740 * 139.91786 * 180.02562 * 12 11 10 14 14 H 0.96996 * 125.63135 * 0.40228 * 13 12 11 15 15 C 1.36206 * 108.73436 * 180.40870 * 13 12 11 16 16 C 1.34511 * 109.30205 * 359.97438 * 15 13 12 17 17 C 1.38243 * 113.38564 * 0.50026 * 12 11 10 18 18 S 1.75613 * 124.96043 * 0.03112 * 10 8 7 19 19 C 1.53045 * 109.53585 * 61.36682 * 5 4 2 20 20 C 1.53183 * 109.31206 * 298.63162 * 19 5 4 21 21 N 1.46928 * 108.77711 * 54.63691 * 20 19 5 22 22 C 1.36932 * 120.63369 * 126.41026 * 21 20 19 23 23 H 1.08000 * 120.00374 * 209.01704 * 22 21 20 24 24 C 1.38816 * 119.99920 * 29.02006 * 22 21 20 25 25 N 1.31618 * 119.99920 * 15.01089 * 24 22 21 26 26 Si 1.86800 * 120.00157 * 195.01218 * 24 22 21 27 27 H 1.48505 * 109.47014 * 60.00351 * 26 24 22 28 28 H 1.48505 * 109.47240 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47207 * 300.00298 * 26 24 22 30 30 H 1.09007 * 109.46765 * 299.64704 * 1 2 3 31 31 H 1.08995 * 109.46900 * 59.64282 * 1 2 3 32 32 H 1.08995 * 109.46897 * 179.65089 * 1 2 3 33 33 H 1.09001 * 109.49630 * 65.62123 * 4 2 1 34 34 H 1.09005 * 109.49582 * 305.53029 * 4 2 1 35 35 H 0.97001 * 120.00434 * 25.06553 * 7 5 4 36 36 H 1.07995 * 122.41068 * 359.97438 * 11 10 8 37 37 H 1.08004 * 125.35145 * 180.02562 * 15 13 12 38 38 H 1.08001 * 126.07832 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.49632 * 58.58790 * 19 5 4 40 40 H 1.09001 * 109.49677 * 178.68083 * 19 5 4 41 41 H 1.08995 * 109.58886 * 174.42263 * 20 19 5 42 42 H 1.09006 * 109.59007 * 294.71123 * 20 19 5 43 43 H 0.96998 * 120.00244 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1700 6 1 3.9377 -1.3450 -2.0668 7 7 4.1570 0.4898 -1.0749 8 6 5.4207 0.7007 -1.4935 9 8 6.0720 -0.2204 -1.9511 10 6 6.0097 2.0378 -1.3989 11 6 7.2708 2.3614 -1.7843 12 6 7.6189 3.6942 -1.6079 13 7 8.7043 4.5513 -1.8084 14 1 9.5619 4.2986 -2.1845 15 6 8.3589 5.8001 -1.3884 16 6 7.0957 5.7805 -0.9267 17 6 6.6075 4.4569 -1.0543 18 16 5.1909 3.4554 -0.7634 19 6 3.9569 -1.6657 0.0636 20 6 3.4651 -0.9469 1.3238 21 7 2.0226 -0.6995 1.1946 22 6 1.1538 -1.1126 2.1690 23 1 0.1360 -1.3671 1.9125 24 6 1.5812 -1.2041 3.4866 25 7 2.7044 -0.6260 3.8557 26 14 0.5621 -2.1480 4.7356 27 1 0.4324 -3.5622 4.3014 28 1 1.2311 -2.0968 6.0604 29 1 -0.7870 -1.5358 4.8378 30 1 -0.3633 0.5084 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0063 33 1 1.7660 -0.1669 -2.1367 34 1 1.6030 -1.7253 -1.2912 35 1 3.6380 1.2238 -0.7107 36 1 7.9530 1.6353 -2.2009 37 1 8.9985 6.6698 -1.4216 38 1 6.5509 6.6237 -0.5284 39 1 3.4984 -2.6527 0.0054 40 1 5.0413 -1.7695 0.1038 41 1 3.6518 -1.5716 2.1972 42 1 3.9922 0.0010 1.4331 43 1 3.0029 -0.6896 4.7764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947974557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:11 Heat of formation + Delta-G solvation = 57.618151 kcal Electronic energy + Delta-G solvation = -26368.065130 eV Core-core repulsion = 22734.174256 eV Total energy + Delta-G solvation = -3633.890874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.29241 -39.72503 -37.67752 -35.08501 -34.23786 -32.33421 -31.34185 -31.02319 -29.75122 -28.08516 -26.36619 -25.01720 -24.04404 -22.15421 -21.74135 -20.94195 -20.57248 -19.75530 -18.79296 -18.30596 -16.82987 -16.36322 -15.51465 -15.43759 -15.10124 -15.01429 -14.49885 -14.44378 -13.95381 -13.83127 -13.69575 -13.59926 -13.12907 -12.85299 -12.80697 -12.42611 -12.03576 -11.81153 -11.52216 -11.40753 -11.17941 -10.96679 -10.87650 -10.66749 -10.60166 -10.39400 -10.12717 -10.05986 -9.78252 -9.77655 -9.65655 -9.27405 -8.65574 -8.42629 -8.18274 -7.71738 -6.60824 -5.74226 -3.18564 0.54234 1.43455 1.98344 2.33321 2.53597 2.82849 3.39961 3.41888 3.46361 3.46883 3.53457 4.51182 4.73748 4.75221 4.91536 5.20226 5.34362 5.35315 5.38784 5.42448 5.64307 5.67627 5.69800 5.84425 5.92979 6.01891 6.13876 6.25434 6.33309 6.36606 6.38909 6.46667 6.58896 6.59783 6.65606 6.79179 6.96897 7.03958 7.07175 7.23248 7.42004 7.73371 7.80363 7.84658 8.44172 8.49267 9.24987 9.88563 10.45231 11.33754 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.003203 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.152631 B = 8738.543774 C = 9284.639190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.140 4.140 5 C 0.155 3.845 6 H 0.075 0.925 7 N -0.705 5.705 8 C 0.590 3.410 9 O -0.540 6.540 10 C -0.229 4.229 11 C -0.039 4.039 12 C 0.025 3.975 13 N -0.559 5.559 14 H 0.418 0.582 15 C 0.053 3.947 16 C -0.171 4.171 17 C -0.191 4.191 18 S 0.177 5.823 19 C -0.154 4.154 20 C 0.174 3.826 21 N -0.586 5.586 22 C -0.251 4.251 23 H 0.069 0.931 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.400 0.600 36 H 0.148 0.852 37 H 0.177 0.823 38 H 0.147 0.853 39 H 0.065 0.935 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.013 11.723 -12.546 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.036 0.964 4 C -0.179 4.179 5 C 0.051 3.949 6 H 0.093 0.907 7 N -0.356 5.356 8 C 0.376 3.624 9 O -0.420 6.420 10 C -0.349 4.349 11 C -0.075 4.075 12 C -0.089 4.089 13 N -0.160 5.160 14 H 0.256 0.744 15 C -0.080 4.080 16 C -0.200 4.200 17 C -0.313 4.313 18 S 0.440 5.560 19 C -0.194 4.194 20 C 0.049 3.951 21 N -0.310 5.310 22 C -0.381 4.381 23 H 0.087 0.913 24 C -0.195 4.195 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.236 0.764 36 H 0.165 0.835 37 H 0.194 0.806 38 H 0.164 0.836 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.168 11.236 -12.140 18.448 hybrid contribution 1.245 -0.364 0.256 1.322 sum 9.412 10.871 -11.884 18.655 Atomic orbital electron populations 1.21802 0.95768 1.01506 1.00344 1.20388 0.93234 0.93075 0.87277 0.96361 1.22382 0.93791 1.02463 0.99311 1.20946 0.93106 0.81818 0.99013 0.90677 1.46014 1.13519 1.13009 1.63062 1.16805 0.81845 0.85791 0.78000 1.90796 1.61185 1.43192 1.46784 1.23860 0.99202 0.98561 1.13290 1.19178 0.95447 0.92518 1.00380 1.18002 0.89040 0.92273 1.09566 1.41868 1.13274 1.07308 1.53572 0.74421 1.21831 0.96974 0.87502 1.01686 1.20140 0.95174 0.94662 1.10054 1.23263 0.98702 0.99250 1.10121 1.84017 1.11587 0.96682 1.63702 1.22571 0.99998 0.99435 0.97440 1.20727 0.83091 0.97201 0.94111 1.44125 1.02995 1.64955 1.18896 1.19122 0.94797 1.37935 0.86231 0.91301 1.25077 0.97784 0.99719 0.96952 1.70004 1.23258 1.44473 1.16892 0.86406 0.79614 0.80176 0.80737 1.21122 1.21738 1.20966 0.91879 0.94282 0.92668 0.92503 0.90465 0.76427 0.83469 0.80621 0.83561 0.91661 0.92722 0.89460 0.96390 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 7.94 37.16 0.30 -2.17 16 2 C 0.17 3.28 3.20 -67.60 -0.22 3.07 16 3 H 0.02 0.37 6.64 -51.93 -0.34 0.03 16 4 C -0.14 -2.36 5.07 -26.62 -0.13 -2.49 16 5 C 0.15 2.76 2.78 -67.89 -0.19 2.57 16 6 H 0.08 1.32 7.57 -51.92 -0.39 0.93 16 7 N -0.71 -12.19 4.26 -55.15 -0.24 -12.43 16 8 C 0.59 10.44 7.74 -12.97 -0.10 10.33 16 9 O -0.54 -10.83 16.43 5.16 0.08 -10.75 16 10 C -0.23 -3.52 6.38 -37.18 -0.24 -3.76 16 11 C -0.04 -0.54 9.88 -40.23 -0.40 -0.94 16 12 C 0.02 0.31 7.67 -84.01 -0.64 -0.34 16 13 N -0.56 -4.77 6.21 -10.90 -0.07 -4.84 16 14 H 0.42 2.20 8.96 -40.82 -0.37 1.84 16 15 C 0.05 0.41 11.85 -16.93 -0.20 0.20 16 16 C -0.17 -1.72 10.85 -39.60 -0.43 -2.15 16 17 C -0.19 -2.47 7.31 -38.28 -0.28 -2.75 16 18 S 0.18 2.45 22.29 -107.50 -2.40 0.05 16 19 C -0.15 -3.12 5.77 -26.61 -0.15 -3.27 16 20 C 0.17 4.15 5.03 -3.71 -0.02 4.13 16 21 N -0.59 -14.01 2.99 -164.78 -0.49 -14.50 16 22 C -0.25 -6.60 8.60 -15.06 -0.13 -6.73 16 23 H 0.07 1.76 6.21 -52.49 -0.33 1.43 16 24 C 0.00 0.09 4.96 -17.43 -0.09 0.00 16 25 N -0.90 -25.88 11.14 55.49 0.62 -25.26 16 26 Si 0.90 21.51 29.58 -169.99 -5.03 16.49 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.06 1.23 7.62 -51.92 -0.40 0.84 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 1.01 7.45 -51.93 -0.39 0.62 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.40 6.72 5.93 -40.82 -0.24 6.48 16 36 H 0.15 1.88 8.00 -52.49 -0.42 1.46 16 37 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 42 H 0.02 0.45 7.74 -51.93 -0.40 0.05 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -32.23 356.57 -10.75 -42.98 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.69 Total: 7.17 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.92 Total: -4.28 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.18 Total: -57.03 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.40 Total: 0.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.23 -10.75 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.598 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds