Wall clock time and date at job start Tue Mar 31 2020 18:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.70178 * 2 1 4 4 C 1.53184 * 109.58839 * 239.64320 * 2 1 3 5 5 C 1.53037 * 109.31354 * 185.57603 * 4 2 1 6 6 H 1.09008 * 109.44821 * 181.37655 * 5 4 2 7 7 N 1.46492 * 109.46136 * 301.34472 * 5 4 2 8 8 C 1.34783 * 120.00186 * 205.06618 * 7 5 4 9 9 O 1.21734 * 119.99465 * 0.02562 * 8 7 5 10 10 C 1.46409 * 120.00123 * 179.97438 * 8 7 5 11 11 C 1.35775 * 124.95582 * 179.72073 * 10 8 7 12 12 C 1.38880 * 115.18489 * 179.78721 * 11 10 8 13 13 N 1.39740 * 139.91786 * 180.02562 * 12 11 10 14 14 H 0.96996 * 125.63135 * 0.40228 * 13 12 11 15 15 C 1.36206 * 108.73436 * 180.40870 * 13 12 11 16 16 C 1.34511 * 109.30205 * 359.97438 * 15 13 12 17 17 C 1.38243 * 113.38564 * 0.50026 * 12 11 10 18 18 S 1.75613 * 124.96043 * 0.03112 * 10 8 7 19 19 C 1.53045 * 109.53585 * 61.36682 * 5 4 2 20 20 C 1.53183 * 109.31206 * 298.63162 * 19 5 4 21 21 N 1.46928 * 108.77711 * 54.63691 * 20 19 5 22 22 C 1.36932 * 120.63369 * 126.41026 * 21 20 19 23 23 H 1.08000 * 120.00374 * 209.01704 * 22 21 20 24 24 C 1.38816 * 119.99920 * 29.02006 * 22 21 20 25 25 N 1.31618 * 119.99920 * 15.01089 * 24 22 21 26 26 Si 1.86800 * 120.00157 * 195.01218 * 24 22 21 27 27 H 1.48505 * 109.47014 * 60.00351 * 26 24 22 28 28 H 1.48505 * 109.47240 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47207 * 300.00298 * 26 24 22 30 30 H 1.09007 * 109.46765 * 299.64704 * 1 2 3 31 31 H 1.08995 * 109.46900 * 59.64282 * 1 2 3 32 32 H 1.08995 * 109.46897 * 179.65089 * 1 2 3 33 33 H 1.09001 * 109.49630 * 65.62123 * 4 2 1 34 34 H 1.09005 * 109.49582 * 305.53029 * 4 2 1 35 35 H 0.97001 * 120.00434 * 25.06553 * 7 5 4 36 36 H 1.07995 * 122.41068 * 359.97438 * 11 10 8 37 37 H 1.08004 * 125.35145 * 180.02562 * 15 13 12 38 38 H 1.08001 * 126.07832 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.49632 * 58.58790 * 19 5 4 40 40 H 1.09001 * 109.49677 * 178.68083 * 19 5 4 41 41 H 1.08995 * 109.58886 * 174.42263 * 20 19 5 42 42 H 1.09006 * 109.59007 * 294.71123 * 20 19 5 43 43 H 0.96998 * 120.00244 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5675 -0.8479 -1.1700 6 1 3.9377 -1.3450 -2.0668 7 7 4.1570 0.4898 -1.0749 8 6 5.4207 0.7007 -1.4935 9 8 6.0720 -0.2204 -1.9511 10 6 6.0097 2.0378 -1.3989 11 6 7.2708 2.3614 -1.7843 12 6 7.6189 3.6942 -1.6079 13 7 8.7043 4.5513 -1.8084 14 1 9.5619 4.2986 -2.1845 15 6 8.3589 5.8001 -1.3884 16 6 7.0957 5.7805 -0.9267 17 6 6.6075 4.4569 -1.0543 18 16 5.1909 3.4554 -0.7634 19 6 3.9569 -1.6657 0.0636 20 6 3.4651 -0.9469 1.3238 21 7 2.0226 -0.6995 1.1946 22 6 1.1538 -1.1126 2.1690 23 1 0.1360 -1.3671 1.9125 24 6 1.5812 -1.2041 3.4866 25 7 2.7044 -0.6260 3.8557 26 14 0.5621 -2.1480 4.7356 27 1 0.4324 -3.5622 4.3014 28 1 1.2311 -2.0968 6.0604 29 1 -0.7870 -1.5358 4.8378 30 1 -0.3633 0.5084 0.8932 31 1 -0.3633 0.5194 -0.8867 32 1 -0.3633 -1.0276 -0.0063 33 1 1.7660 -0.1669 -2.1367 34 1 1.6030 -1.7253 -1.2912 35 1 3.6380 1.2238 -0.7107 36 1 7.9530 1.6353 -2.2009 37 1 8.9985 6.6698 -1.4216 38 1 6.5509 6.6237 -0.5284 39 1 3.4984 -2.6527 0.0054 40 1 5.0413 -1.7695 0.1038 41 1 3.6518 -1.5716 2.1972 42 1 3.9922 0.0010 1.4331 43 1 3.0029 -0.6896 4.7764 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947974557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:10 Heat of formation + Delta-G solvation = 37.380286 kcal Electronic energy + Delta-G solvation = -26368.942710 eV Core-core repulsion = 22734.174256 eV Total energy + Delta-G solvation = -3634.768454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12188 -41.15273 -39.24545 -36.19220 -35.79847 -34.10542 -32.93072 -31.86426 -31.47407 -29.15073 -27.94506 -26.82009 -25.19000 -23.77265 -22.93667 -22.23643 -21.72714 -20.87448 -20.32046 -19.36825 -18.24909 -17.89400 -17.10384 -16.73395 -16.48775 -16.30266 -15.80212 -15.62702 -15.46857 -15.38767 -15.04093 -14.75641 -14.43650 -14.37639 -14.11591 -13.66696 -13.34123 -13.18333 -12.96956 -12.81394 -12.66637 -12.53292 -12.48022 -12.30218 -12.18318 -11.97459 -11.91691 -11.71023 -11.42358 -11.19179 -10.99106 -10.66953 -10.48265 -10.11905 -9.13895 -8.63954 -8.58129 -7.79684 -5.25618 -0.49789 0.42503 0.97956 1.38587 1.48601 1.51155 1.56775 1.72758 1.94156 2.17202 2.34436 2.55072 3.35397 3.61853 3.70342 3.92969 3.97967 4.07676 4.16659 4.18485 4.24576 4.43369 4.55774 4.59712 4.66351 4.74233 4.79232 4.92513 4.96700 4.98893 5.03716 5.07464 5.10671 5.16738 5.41261 5.51187 5.54544 5.55567 5.58284 5.75126 5.77907 5.79140 6.42730 6.46485 6.62825 7.07585 7.21166 7.93431 8.45439 9.26421 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.016543 B = 0.003203 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.152631 B = 8738.543774 C = 9284.639190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.159 3.841 3 H 0.017 0.983 4 C -0.126 4.126 5 C 0.159 3.841 6 H 0.084 0.916 7 N -0.704 5.704 8 C 0.590 3.410 9 O -0.572 6.572 10 C -0.268 4.268 11 C -0.022 4.022 12 C -0.004 4.004 13 N -0.544 5.544 14 H 0.436 0.564 15 C 0.094 3.906 16 C -0.202 4.202 17 C -0.197 4.197 18 S 0.156 5.844 19 C -0.142 4.142 20 C 0.188 3.812 21 N -0.600 5.600 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.961 3.039 27 H -0.281 1.281 28 H -0.300 1.300 29 H -0.274 1.274 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.152 0.848 37 H 0.230 0.770 38 H 0.163 0.837 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.049 0.951 42 H -0.006 1.006 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 13.589 -14.360 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.053 3.947 3 H 0.035 0.965 4 C -0.166 4.166 5 C 0.055 3.945 6 H 0.102 0.898 7 N -0.354 5.354 8 C 0.378 3.622 9 O -0.455 6.455 10 C -0.388 4.388 11 C -0.059 4.059 12 C -0.117 4.117 13 N -0.147 5.147 14 H 0.277 0.723 15 C -0.042 4.042 16 C -0.231 4.231 17 C -0.320 4.320 18 S 0.419 5.581 19 C -0.182 4.182 20 C 0.062 3.938 21 N -0.324 5.324 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.249 4.249 25 N -0.584 5.584 26 Si 0.790 3.210 27 H -0.207 1.207 28 H -0.227 1.227 29 H -0.200 1.200 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.238 0.762 36 H 0.169 0.831 37 H 0.246 0.754 38 H 0.181 0.819 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.012 0.988 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.553 13.089 -13.995 20.984 hybrid contribution 1.264 -0.739 0.764 1.651 sum 9.817 12.351 -13.232 20.591 Atomic orbital electron populations 1.21736 0.94181 1.01619 1.01179 1.20655 0.94601 0.92889 0.86573 0.96521 1.22265 0.92504 1.02835 0.98953 1.20883 0.94071 0.81876 0.97719 0.89811 1.45974 1.13671 1.12751 1.63037 1.17098 0.81562 0.86453 0.77085 1.90758 1.61820 1.44450 1.48436 1.23584 1.00359 0.98020 1.16841 1.19331 0.94745 0.93455 0.98319 1.17937 0.90600 0.91963 1.11243 1.42000 1.13107 1.07045 1.52508 0.72342 1.22696 0.96281 0.87978 0.97195 1.20577 0.96630 0.94017 1.11893 1.23627 0.98001 1.00658 1.09672 1.83908 1.12840 0.96878 1.64479 1.22387 0.99238 0.99585 0.97012 1.20384 0.83557 0.95560 0.94340 1.44348 1.02584 1.65689 1.19819 1.19488 0.95269 1.36417 0.86675 0.90461 1.25792 0.99005 1.01200 0.98872 1.70178 1.25114 1.46500 1.16581 0.85440 0.78420 0.79033 0.78135 1.20721 1.22697 1.19996 0.93991 0.90480 0.92885 0.89185 0.89975 0.76219 0.83081 0.75386 0.81944 0.91378 0.93642 0.93263 0.98806 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 7.94 71.98 0.57 -3.86 16 2 C 0.16 6.10 3.20 44.97 0.14 6.24 16 3 H 0.02 0.67 6.64 -2.39 -0.02 0.66 16 4 C -0.13 -4.03 5.07 30.67 0.16 -3.87 16 5 C 0.16 5.61 2.78 45.02 0.13 5.73 16 6 H 0.08 2.88 7.57 -2.38 -0.02 2.86 16 7 N -0.70 -24.77 4.26 -446.60 -1.90 -26.68 16 8 C 0.59 21.53 7.74 86.37 0.67 22.20 16 9 O -0.57 -23.60 16.43 -4.46 -0.07 -23.67 16 10 C -0.27 -8.52 6.38 23.83 0.15 -8.37 16 11 C -0.02 -0.61 9.88 21.85 0.22 -0.39 16 12 C 0.00 -0.10 7.67 38.04 0.29 0.19 16 13 N -0.54 -7.45 6.21 -188.38 -1.17 -8.62 16 14 H 0.44 2.97 8.96 -92.71 -0.83 2.14 16 15 C 0.09 0.99 11.85 83.16 0.99 1.98 16 16 C -0.20 -3.51 10.85 22.26 0.24 -3.27 16 17 C -0.20 -4.88 7.31 23.11 0.17 -4.71 16 18 S 0.16 4.43 22.29 -56.49 -1.26 3.17 16 19 C -0.14 -5.89 5.77 30.67 0.18 -5.71 16 20 C 0.19 9.33 5.03 86.36 0.43 9.77 16 21 N -0.60 -29.15 2.99 -675.23 -2.02 -31.17 16 22 C -0.25 -13.18 8.60 84.04 0.72 -12.46 16 23 H 0.08 3.92 6.21 -2.91 -0.02 3.90 16 24 C -0.05 -3.00 4.96 84.86 0.42 -2.58 16 25 N -0.94 -56.06 11.14 21.65 0.24 -55.82 16 26 Si 0.96 45.12 29.58 68.60 2.03 47.15 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 29 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 30 H 0.04 1.59 7.62 -2.38 -0.02 1.57 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.05 1.82 7.45 -2.39 -0.02 1.80 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 35 H 0.40 13.82 5.93 -92.71 -0.55 13.27 16 36 H 0.15 3.89 8.00 -2.91 -0.02 3.87 16 37 H 0.23 -0.02 8.06 -2.91 -0.02 -0.04 16 38 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 40 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 42 H -0.01 -0.33 7.74 -2.38 -0.02 -0.35 16 43 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -73.39 356.57 1.00 -72.39 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.32 Total: 22.36 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 5.47 Total: 0.88 kcal Atomic # 7 Polarization: -117.43 SS G_CDS: -4.85 Total: -122.28 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.07 Total: -23.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.26 Total: 3.17 kcal Total: -73.39 1.00 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.770 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds