Wall clock time and date at job start Tue Mar 31 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.70278 * 2 1 4 4 C 1.53621 * 109.66420 * 120.59690 * 2 1 3 5 5 C 1.53038 * 109.23965 * 174.55147 * 4 2 1 6 6 H 1.08998 * 109.45652 * 58.52018 * 5 4 2 7 7 N 1.46503 * 109.45818 * 178.48837 * 5 4 2 8 8 C 1.34779 * 119.99979 * 205.06402 * 7 5 4 9 9 O 1.21736 * 119.99832 * 359.97438 * 8 7 5 10 10 C 1.46407 * 120.00315 * 180.02562 * 8 7 5 11 11 C 1.35775 * 124.96345 * 179.72461 * 10 8 7 12 12 C 1.38869 * 115.18934 * 179.78688 * 11 10 8 13 13 N 1.39748 * 139.91784 * 180.12465 * 12 11 10 14 14 H 0.97001 * 125.62815 * 0.33277 * 13 12 11 15 15 C 1.36213 * 108.73475 * 180.34999 * 13 12 11 16 16 C 1.34507 * 109.29625 * 0.02562 * 15 13 12 17 17 C 1.38243 * 113.39147 * 0.48866 * 12 11 10 18 18 S 1.75622 * 124.95872 * 0.02562 * 10 8 7 19 19 C 1.53041 * 109.53729 * 298.50254 * 5 4 2 20 20 C 1.53191 * 109.30786 * 61.36975 * 19 5 4 21 21 N 1.46926 * 108.77740 * 305.36253 * 20 19 5 22 22 C 1.36936 * 120.63203 * 233.58665 * 21 20 19 23 23 H 1.08006 * 119.99973 * 150.43817 * 22 21 20 24 24 C 1.38804 * 120.00274 * 330.44290 * 22 21 20 25 25 N 1.31620 * 119.99953 * 344.28253 * 24 22 21 26 26 Si 1.86802 * 120.00327 * 164.28812 * 24 22 21 27 27 H 1.48506 * 109.47153 * 266.30453 * 26 24 22 28 28 H 1.48499 * 109.47180 * 26.30176 * 26 24 22 29 29 H 1.48495 * 109.47561 * 146.30394 * 26 24 22 30 30 H 1.09002 * 109.46933 * 180.35880 * 1 2 3 31 31 H 1.09001 * 109.46782 * 300.35178 * 1 2 3 32 32 H 1.08990 * 109.47330 * 60.35320 * 1 2 3 33 33 H 1.08997 * 109.64115 * 54.55385 * 4 2 1 34 34 H 1.09001 * 109.45683 * 294.42530 * 4 2 1 35 35 H 0.97002 * 120.00180 * 25.06453 * 7 5 4 36 36 H 1.07997 * 122.40428 * 359.97438 * 11 10 8 37 37 H 1.08001 * 125.34960 * 180.02562 * 15 13 12 38 38 H 1.08005 * 126.07481 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.49885 * 301.41991 * 19 5 4 40 40 H 1.08999 * 109.52584 * 181.33345 * 19 5 4 41 41 H 1.09007 * 109.58340 * 185.57893 * 20 19 5 42 42 H 1.08998 * 109.70667 * 65.22581 * 20 19 5 43 43 H 0.97006 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8498 1.1675 6 1 4.0064 0.1472 1.0988 7 7 4.0727 -1.5194 2.3702 8 6 5.3364 -1.3019 2.7852 9 8 6.0612 -0.5494 2.1605 10 6 5.8378 -1.9716 3.9868 11 6 7.0906 -1.8303 4.4907 12 6 7.3489 -2.5580 5.6450 13 7 8.3859 -2.7916 6.5521 14 1 9.2714 -2.3975 6.5118 15 6 7.9481 -3.6643 7.5019 16 6 6.6723 -4.0013 7.2416 17 6 6.2715 -3.3124 6.0708 18 16 4.9089 -3.0806 4.9825 19 6 3.9615 -1.6628 -0.0689 20 6 3.4656 -0.9420 -1.3264 21 7 2.0225 -0.6995 -1.1945 22 6 1.1537 -1.1126 -2.1690 23 1 0.1396 -1.3796 -1.9105 24 6 1.5763 -1.1884 -3.4890 25 7 2.6850 -0.5842 -3.8607 26 14 0.5715 -2.1475 -4.7379 27 1 1.0939 -3.5344 -4.8336 28 1 -0.8495 -2.1825 -4.3082 29 1 0.6712 -1.4884 -6.0649 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8930 33 1 1.6097 -1.7337 1.2889 34 1 1.7690 -0.1776 2.1389 35 1 3.4952 -2.1193 2.8678 36 1 7.8320 -1.1953 4.0288 37 1 8.5335 -4.0283 8.3333 38 1 6.0618 -4.6769 7.8224 39 1 3.5061 -2.6515 -0.0129 40 1 5.0460 -1.7636 -0.1112 41 1 3.6532 -1.5637 -2.2019 42 1 3.9875 0.0088 -1.4350 43 1 2.9806 -0.6374 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947974558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:16 Heat of formation + Delta-G solvation = 54.421108 kcal Electronic energy + Delta-G solvation = -25693.649703 eV Core-core repulsion = 22059.620195 eV Total energy + Delta-G solvation = -3634.029508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44802 -39.68362 -37.65205 -35.26721 -34.51520 -32.38556 -31.41608 -31.17025 -29.69481 -28.22074 -26.34950 -25.02079 -23.93608 -22.23146 -21.73911 -21.09046 -20.35845 -19.96586 -19.04093 -18.59923 -16.92459 -16.22956 -15.86840 -15.67125 -15.15811 -15.06093 -14.52295 -14.50321 -14.00838 -13.85998 -13.75496 -13.58518 -13.24942 -12.99060 -12.78836 -12.67785 -12.18948 -11.70059 -11.56513 -11.19680 -11.11257 -11.08218 -10.88876 -10.86281 -10.63932 -10.28258 -10.13920 -10.01725 -9.94160 -9.92551 -9.70895 -9.36534 -8.74517 -8.41987 -8.32616 -7.89259 -6.60842 -5.74003 -3.18295 0.38271 1.24606 1.78771 2.18946 2.37875 2.68295 3.29972 3.35456 3.40872 3.47134 3.48295 4.51956 4.59280 4.60717 4.75865 5.06330 5.20253 5.30663 5.40751 5.44825 5.52815 5.61796 5.69056 5.78601 5.80499 6.02782 6.18480 6.21205 6.26605 6.34966 6.43568 6.44570 6.46149 6.54684 6.67423 6.82967 6.90907 7.05977 7.08569 7.13301 7.41454 7.65202 7.73162 7.86055 8.32127 8.50449 9.25623 9.89241 10.46723 11.34560 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.002415 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.916890 B =11590.842300 C =11803.537528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.135 4.135 5 C 0.152 3.848 6 H 0.084 0.916 7 N -0.717 5.717 8 C 0.587 3.413 9 O -0.529 6.529 10 C -0.228 4.228 11 C -0.036 4.036 12 C 0.025 3.975 13 N -0.557 5.557 14 H 0.420 0.580 15 C 0.056 3.944 16 C -0.172 4.172 17 C -0.189 4.189 18 S 0.163 5.837 19 C -0.147 4.147 20 C 0.175 3.825 21 N -0.588 5.588 22 C -0.250 4.250 23 H 0.070 0.930 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.279 1.279 29 H -0.292 1.292 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.393 0.607 36 H 0.149 0.851 37 H 0.178 0.822 38 H 0.147 0.853 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.021 0.979 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.480 -5.998 24.021 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.046 0.954 4 C -0.175 4.175 5 C 0.049 3.951 6 H 0.102 0.898 7 N -0.366 5.366 8 C 0.372 3.628 9 O -0.408 6.408 10 C -0.349 4.349 11 C -0.072 4.072 12 C -0.089 4.089 13 N -0.158 5.158 14 H 0.257 0.743 15 C -0.078 4.078 16 C -0.201 4.201 17 C -0.312 4.312 18 S 0.425 5.575 19 C -0.187 4.187 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.380 4.380 23 H 0.088 0.912 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.731 3.269 27 H -0.216 1.216 28 H -0.204 1.204 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.167 0.833 37 H 0.195 0.805 38 H 0.165 0.835 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.677 -5.903 23.258 25.194 hybrid contribution 1.292 -0.176 -0.291 1.336 sum 8.969 -6.079 22.967 25.394 Atomic orbital electron populations 1.21786 0.95710 1.01395 1.00365 1.20446 0.93079 0.93524 0.86555 0.95444 1.22471 0.93491 1.01747 0.99778 1.21109 0.94351 0.96777 0.82880 0.89780 1.46199 1.12663 1.48219 1.29525 1.16844 0.82282 0.81140 0.82514 1.90851 1.56529 1.37093 1.56278 1.23885 0.98749 1.08751 1.03491 1.19245 0.96328 0.98905 0.92711 1.18008 0.89202 1.05120 0.96541 1.41907 1.12850 1.39166 1.21905 0.74274 1.21863 0.95878 0.95182 0.94887 1.20132 0.95613 1.06380 0.98005 1.23194 0.98019 1.06674 1.03270 1.83732 1.11586 1.43687 1.18472 1.22581 0.99836 0.99663 0.96655 1.20735 0.83236 0.97300 0.93834 1.44188 1.02927 1.64919 1.19062 1.19176 0.95201 1.37548 0.86068 0.91215 1.25111 0.97948 0.99569 0.97021 1.70031 1.24261 1.43621 1.16711 0.86309 0.79786 0.79808 0.81043 1.21560 1.20416 1.21862 0.92776 0.94294 0.91823 0.91700 0.92599 0.77342 0.83292 0.80526 0.83543 0.92559 0.92799 0.89338 0.96092 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.96 37.16 0.30 -2.19 16 2 C 0.17 3.51 3.51 -67.37 -0.24 3.27 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -2.29 4.86 -26.39 -0.13 -2.42 16 5 C 0.15 2.72 2.41 -67.89 -0.16 2.56 16 6 H 0.08 1.67 7.57 -51.93 -0.39 1.28 16 7 N -0.72 -10.95 5.07 -55.15 -0.28 -11.23 16 8 C 0.59 9.56 7.74 -12.97 -0.10 9.46 16 9 O -0.53 -10.47 16.43 5.16 0.08 -10.38 16 10 C -0.23 -3.08 6.38 -37.18 -0.24 -3.31 16 11 C -0.04 -0.44 9.88 -40.23 -0.40 -0.84 16 12 C 0.03 0.27 7.67 -84.01 -0.64 -0.38 16 13 N -0.56 -3.99 6.21 -10.90 -0.07 -4.06 16 14 H 0.42 1.72 8.96 -40.82 -0.37 1.36 16 15 C 0.06 0.34 11.85 -16.93 -0.20 0.14 16 16 C -0.17 -1.42 10.84 -39.61 -0.43 -1.85 16 17 C -0.19 -2.06 7.31 -38.29 -0.28 -2.34 16 18 S 0.16 1.79 22.29 -107.50 -2.40 -0.61 16 19 C -0.15 -2.98 5.65 -26.61 -0.15 -3.14 16 20 C 0.18 4.27 5.28 -3.71 -0.02 4.25 16 21 N -0.59 -14.43 2.98 -164.52 -0.49 -14.92 16 22 C -0.25 -6.67 8.57 -15.06 -0.13 -6.80 16 23 H 0.07 1.81 6.24 -52.48 -0.33 1.48 16 24 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 25 N -0.90 -26.30 11.23 55.49 0.62 -25.68 16 26 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.27 7.62 -51.93 -0.40 0.88 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.39 5.04 7.66 -40.82 -0.31 4.73 16 36 H 0.15 1.74 8.00 -52.49 -0.42 1.32 16 37 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 38 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.09 2.41 6.13 -51.93 -0.32 2.09 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 361.04 15.07 5.44 5.44 Total: -1.00 -33.04 361.04 -10.88 -43.92 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.86 Total: 4.50 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.91 Total: -3.62 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.21 Total: -55.89 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.40 Total: -0.61 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.04 -10.88 -43.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.340 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds