Wall clock time and date at job start Tue Mar 31 2020 18:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.70278 * 2 1 4 4 C 1.53621 * 109.66420 * 120.59690 * 2 1 3 5 5 C 1.53038 * 109.23965 * 174.55147 * 4 2 1 6 6 H 1.08998 * 109.45652 * 58.52018 * 5 4 2 7 7 N 1.46503 * 109.45818 * 178.48837 * 5 4 2 8 8 C 1.34779 * 119.99979 * 205.06402 * 7 5 4 9 9 O 1.21736 * 119.99832 * 359.97438 * 8 7 5 10 10 C 1.46407 * 120.00315 * 180.02562 * 8 7 5 11 11 C 1.35775 * 124.96345 * 179.72461 * 10 8 7 12 12 C 1.38869 * 115.18934 * 179.78688 * 11 10 8 13 13 N 1.39748 * 139.91784 * 180.12465 * 12 11 10 14 14 H 0.97001 * 125.62815 * 0.33277 * 13 12 11 15 15 C 1.36213 * 108.73475 * 180.34999 * 13 12 11 16 16 C 1.34507 * 109.29625 * 0.02562 * 15 13 12 17 17 C 1.38243 * 113.39147 * 0.48866 * 12 11 10 18 18 S 1.75622 * 124.95872 * 0.02562 * 10 8 7 19 19 C 1.53041 * 109.53729 * 298.50254 * 5 4 2 20 20 C 1.53191 * 109.30786 * 61.36975 * 19 5 4 21 21 N 1.46926 * 108.77740 * 305.36253 * 20 19 5 22 22 C 1.36936 * 120.63203 * 233.58665 * 21 20 19 23 23 H 1.08006 * 119.99973 * 150.43817 * 22 21 20 24 24 C 1.38804 * 120.00274 * 330.44290 * 22 21 20 25 25 N 1.31620 * 119.99953 * 344.28253 * 24 22 21 26 26 Si 1.86802 * 120.00327 * 164.28812 * 24 22 21 27 27 H 1.48506 * 109.47153 * 266.30453 * 26 24 22 28 28 H 1.48499 * 109.47180 * 26.30176 * 26 24 22 29 29 H 1.48495 * 109.47561 * 146.30394 * 26 24 22 30 30 H 1.09002 * 109.46933 * 180.35880 * 1 2 3 31 31 H 1.09001 * 109.46782 * 300.35178 * 1 2 3 32 32 H 1.08990 * 109.47330 * 60.35320 * 1 2 3 33 33 H 1.08997 * 109.64115 * 54.55385 * 4 2 1 34 34 H 1.09001 * 109.45683 * 294.42530 * 4 2 1 35 35 H 0.97002 * 120.00180 * 25.06453 * 7 5 4 36 36 H 1.07997 * 122.40428 * 359.97438 * 11 10 8 37 37 H 1.08001 * 125.34960 * 180.02562 * 15 13 12 38 38 H 1.08005 * 126.07481 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.49885 * 301.41991 * 19 5 4 40 40 H 1.08999 * 109.52584 * 181.33345 * 19 5 4 41 41 H 1.09007 * 109.58340 * 185.57893 * 20 19 5 42 42 H 1.08998 * 109.70667 * 65.22581 * 20 19 5 43 43 H 0.97006 * 120.00109 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8498 1.1675 6 1 4.0064 0.1472 1.0988 7 7 4.0727 -1.5194 2.3702 8 6 5.3364 -1.3019 2.7852 9 8 6.0612 -0.5494 2.1605 10 6 5.8378 -1.9716 3.9868 11 6 7.0906 -1.8303 4.4907 12 6 7.3489 -2.5580 5.6450 13 7 8.3859 -2.7916 6.5521 14 1 9.2714 -2.3975 6.5118 15 6 7.9481 -3.6643 7.5019 16 6 6.6723 -4.0013 7.2416 17 6 6.2715 -3.3124 6.0708 18 16 4.9089 -3.0806 4.9825 19 6 3.9615 -1.6628 -0.0689 20 6 3.4656 -0.9420 -1.3264 21 7 2.0225 -0.6995 -1.1945 22 6 1.1537 -1.1126 -2.1690 23 1 0.1396 -1.3796 -1.9105 24 6 1.5763 -1.1884 -3.4890 25 7 2.6850 -0.5842 -3.8607 26 14 0.5715 -2.1475 -4.7379 27 1 1.0939 -3.5344 -4.8336 28 1 -0.8495 -2.1825 -4.3082 29 1 0.6712 -1.4884 -6.0649 30 1 -0.3633 -1.0277 0.0064 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8930 33 1 1.6097 -1.7337 1.2889 34 1 1.7690 -0.1776 2.1389 35 1 3.4952 -2.1193 2.8678 36 1 7.8320 -1.1953 4.0288 37 1 8.5335 -4.0283 8.3333 38 1 6.0618 -4.6769 7.8224 39 1 3.5061 -2.6515 -0.0129 40 1 5.0460 -1.7636 -0.1112 41 1 3.6532 -1.5637 -2.2019 42 1 3.9875 0.0088 -1.4350 43 1 2.9806 -0.6374 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947974558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:15 Heat of formation + Delta-G solvation = 32.764522 kcal Electronic energy + Delta-G solvation = -25694.588803 eV Core-core repulsion = 22059.620195 eV Total energy + Delta-G solvation = -3634.968608 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.12209 -41.03511 -39.27456 -36.33304 -35.91225 -34.22406 -33.03322 -31.86068 -31.41102 -29.21267 -27.92813 -26.72313 -25.12220 -23.72660 -22.95001 -22.02942 -21.55245 -21.34352 -20.49475 -19.40561 -18.34492 -17.77910 -17.28923 -16.85379 -16.47570 -16.22974 -15.77384 -15.60040 -15.48454 -15.32587 -15.01380 -14.89151 -14.52339 -14.37359 -14.32994 -13.66802 -13.32878 -12.97701 -12.96176 -12.73555 -12.68301 -12.62692 -12.53023 -12.36026 -12.06627 -11.97865 -11.86429 -11.71928 -11.52083 -11.41264 -11.03828 -10.66816 -10.54918 -10.13094 -9.13629 -8.64034 -8.61742 -7.82592 -5.29518 -0.51545 0.41985 0.94873 1.37623 1.48252 1.49675 1.58470 1.73364 1.89675 2.14694 2.29858 2.53747 3.33385 3.58250 3.69698 3.86504 3.96046 4.04847 4.16863 4.22370 4.25293 4.38885 4.56159 4.60674 4.68790 4.73571 4.76303 4.82427 4.95726 4.97773 5.05729 5.06509 5.08865 5.16126 5.38451 5.43449 5.52912 5.56615 5.56767 5.71161 5.74575 5.79707 6.42364 6.44595 6.61017 7.08557 7.17982 7.89564 8.43165 9.24879 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.002415 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.916890 B =11590.842300 C =11803.537528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.160 3.840 3 H 0.013 0.987 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.061 0.939 7 N -0.705 5.705 8 C 0.588 3.412 9 O -0.576 6.576 10 C -0.269 4.269 11 C -0.026 4.026 12 C -0.007 4.007 13 N -0.547 5.547 14 H 0.434 0.566 15 C 0.091 3.909 16 C -0.198 4.198 17 C -0.196 4.196 18 S 0.182 5.818 19 C -0.131 4.131 20 C 0.185 3.815 21 N -0.603 5.603 22 C -0.247 4.247 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.941 5.941 26 Si 0.964 3.036 27 H -0.289 1.289 28 H -0.263 1.263 29 H -0.300 1.300 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.144 0.856 37 H 0.227 0.773 38 H 0.166 0.834 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.055 0.945 42 H -0.011 1.011 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.966 -7.915 28.011 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.031 0.969 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.355 5.355 8 C 0.376 3.624 9 O -0.458 6.458 10 C -0.388 4.388 11 C -0.062 4.062 12 C -0.120 4.120 13 N -0.149 5.149 14 H 0.275 0.725 15 C -0.045 4.045 16 C -0.228 4.228 17 C -0.319 4.319 18 S 0.445 5.555 19 C -0.171 4.171 20 C 0.058 3.942 21 N -0.326 5.326 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.253 4.253 25 N -0.588 5.588 26 Si 0.793 3.207 27 H -0.216 1.216 28 H -0.187 1.187 29 H -0.228 1.228 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.245 0.755 36 H 0.162 0.838 37 H 0.244 0.756 38 H 0.184 0.816 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.007 0.993 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.130 -7.828 27.290 29.272 hybrid contribution 1.589 0.398 -1.311 2.098 sum 8.719 -7.430 25.979 28.393 Atomic orbital electron populations 1.21703 0.93687 1.01774 1.01193 1.20727 0.94813 0.92850 0.86260 0.96902 1.22288 0.92063 1.02396 0.99127 1.20757 0.95245 0.95297 0.82893 0.92077 1.45899 1.12822 1.48222 1.28594 1.17219 0.81885 0.80402 0.82928 1.90819 1.57628 1.39268 1.58044 1.23514 1.00065 1.11394 1.03873 1.19346 0.95815 0.98115 0.92954 1.17929 0.90775 1.06118 0.97163 1.42060 1.12915 1.38863 1.21087 0.72516 1.22716 0.95300 0.92151 0.94290 1.20571 0.96997 1.07459 0.97728 1.23639 0.97745 1.06649 1.03901 1.83460 1.11312 1.42741 1.17980 1.22324 0.99060 0.99661 0.96078 1.20425 0.83746 0.95459 0.94575 1.44446 1.02529 1.65615 1.20054 1.19561 0.95690 1.35995 0.86444 0.90134 1.25898 0.99237 1.01052 0.99077 1.70208 1.26297 1.45751 1.16552 0.85288 0.79146 0.77999 0.78261 1.21647 1.18686 1.22754 0.92547 0.90414 0.94048 0.90501 0.89192 0.75536 0.83817 0.75645 0.81617 0.91946 0.93729 0.92678 0.99301 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 7.96 71.98 0.57 -3.83 16 2 C 0.16 6.46 3.51 45.12 0.16 6.62 16 3 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.12 -3.85 4.86 30.82 0.15 -3.70 16 5 C 0.16 5.86 2.41 45.02 0.11 5.97 16 6 H 0.06 2.53 7.57 -2.39 -0.02 2.51 16 7 N -0.71 -21.35 5.07 -446.61 -2.26 -23.62 16 8 C 0.59 19.63 7.74 86.37 0.67 20.30 16 9 O -0.58 -23.97 16.43 -4.46 -0.07 -24.04 16 10 C -0.27 -7.27 6.38 23.83 0.15 -7.12 16 11 C -0.03 -0.63 9.88 21.85 0.22 -0.42 16 12 C -0.01 -0.14 7.67 38.03 0.29 0.15 16 13 N -0.55 -6.05 6.21 -188.38 -1.17 -7.22 16 14 H 0.43 2.16 8.96 -92.71 -0.83 1.33 16 15 C 0.09 0.67 11.85 83.16 0.99 1.65 16 16 C -0.20 -2.54 10.84 22.25 0.24 -2.30 16 17 C -0.20 -3.85 7.31 23.11 0.17 -3.68 16 18 S 0.18 3.79 22.29 -56.49 -1.26 2.53 16 19 C -0.13 -5.50 5.65 30.67 0.17 -5.33 16 20 C 0.18 9.51 5.28 86.36 0.46 9.96 16 21 N -0.60 -30.25 2.98 -674.42 -2.01 -32.26 16 22 C -0.25 -13.29 8.57 84.03 0.72 -12.57 16 23 H 0.08 4.11 6.24 -2.91 -0.02 4.09 16 24 C -0.06 -3.28 4.93 84.86 0.42 -2.86 16 25 N -0.94 -57.50 11.23 21.65 0.24 -57.26 16 26 Si 0.96 45.41 29.58 68.60 2.03 47.44 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 29 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 30 H 0.06 1.94 7.44 -2.39 -0.02 1.92 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.61 7.62 -2.39 -0.02 1.59 16 33 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.41 9.90 7.66 -92.71 -0.71 9.19 16 36 H 0.14 3.52 8.00 -2.91 -0.02 3.49 16 37 H 0.23 -0.61 8.06 -2.91 -0.02 -0.63 16 38 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 39 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.05 3.19 6.13 -2.38 -0.01 3.17 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -76.43 361.04 0.49 -75.94 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -0.48 Total: 15.65 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.48 Total: 2.86 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -5.20 Total: -120.36 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.07 Total: -24.04 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.26 Total: 2.53 kcal Total: -76.43 0.49 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947974558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.700 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds