Wall clock time and date at job start Tue Mar 31 2020 16:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30934 * 122.90963 * 2 1 4 4 C 1.29426 * 117.36812 * 180.30592 * 3 2 1 5 5 C 1.50700 * 124.80893 * 179.69173 * 4 3 2 6 6 C 1.53002 * 117.49542 * 8.66054 * 5 4 3 7 7 C 1.53002 * 117.50100 * 300.03807 * 5 4 3 8 8 S 1.70958 * 110.38877 * 359.72314 * 4 3 2 9 9 C 1.35668 * 122.89922 * 179.80030 * 2 1 3 10 10 C 1.46681 * 126.13388 * 0.02562 * 9 2 1 11 11 O 1.21690 * 119.99483 * 359.71652 * 10 9 2 12 12 N 1.34770 * 119.99955 * 179.71331 * 10 9 2 13 13 C 1.46507 * 119.99805 * 179.97438 * 12 10 9 14 14 H 1.09000 * 115.49343 * 9.62731 * 13 12 10 15 15 C 1.52998 * 117.44340 * 224.23829 * 13 12 10 16 16 H 1.08997 * 120.26072 * 3.83654 * 15 13 12 17 17 C 1.54394 * 118.12045 * 160.80922 * 15 13 12 18 18 N 1.48147 * 104.61314 * 87.19574 * 17 15 13 19 19 C 1.36934 * 127.83786 * 140.42058 * 18 17 15 20 20 H 1.08003 * 120.00205 * 195.61401 * 19 18 17 21 21 C 1.38812 * 120.00069 * 15.60573 * 19 18 17 22 22 N 1.31624 * 119.99900 * 9.11396 * 21 19 18 23 23 Si 1.86805 * 120.00196 * 189.10944 * 21 19 18 24 24 H 1.48499 * 109.46994 * 90.00409 * 23 21 19 25 25 H 1.48494 * 109.46985 * 210.00398 * 23 21 19 26 26 H 1.48499 * 109.47118 * 330.00472 * 23 21 19 27 27 C 1.48149 * 104.32486 * 320.41221 * 18 17 15 28 28 C 1.53001 * 117.43975 * 154.99894 * 13 12 10 29 29 H 1.09001 * 120.26547 * 356.17546 * 28 13 12 30 30 H 1.08998 * 109.46937 * 270.19796 * 1 2 3 31 31 H 1.09002 * 109.46717 * 30.20067 * 1 2 3 32 32 H 1.08996 * 109.47065 * 150.19472 * 1 2 3 33 33 H 1.09000 * 115.55195 * 154.36002 * 5 4 3 34 34 H 1.08997 * 117.49934 * 0.02562 * 6 5 4 35 35 H 1.09005 * 117.49937 * 145.01910 * 6 5 4 36 36 H 1.08987 * 117.50160 * 214.97744 * 7 5 4 37 37 H 1.08999 * 117.49306 * 0.02562 * 7 5 4 38 38 H 0.96993 * 120.00492 * 0.02562 * 12 10 9 39 39 H 1.08997 * 110.40757 * 328.41167 * 17 15 13 40 40 H 1.08997 * 110.50477 * 206.03010 * 17 15 13 41 41 H 0.96999 * 119.99596 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.40728 * 280.80319 * 27 18 17 43 43 H 1.08999 * 110.40614 * 158.37731 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2185 1.0992 0.0000 4 6 3.5067 0.9743 -0.0061 5 6 4.4823 2.1227 -0.0138 6 6 3.9182 3.5303 0.1899 7 6 4.4162 3.0981 -1.1908 8 16 3.9447 -0.6782 -0.0052 9 6 2.2440 -1.1391 0.0040 10 6 1.7191 -2.5088 0.0082 11 8 0.5173 -2.6997 0.0136 12 7 2.5678 -3.5556 0.0061 13 6 2.0436 -4.9237 0.0109 14 1 0.9691 -5.0149 -0.1485 15 6 2.7040 -5.9286 0.9568 16 1 3.4896 -5.6056 1.6399 17 6 1.9212 -7.2087 1.3204 18 7 2.2595 -8.1714 0.2464 19 6 2.5019 -9.5137 0.3673 20 1 2.9789 -10.0511 -0.4390 21 6 2.1347 -10.1837 1.5262 22 7 1.3970 -9.5768 2.4317 23 14 2.6876 -11.9468 1.8009 24 1 3.9933 -11.9516 2.5083 25 1 1.6770 -12.6602 2.6223 26 1 2.8321 -12.6301 0.4904 27 6 2.2757 -7.3526 -0.9881 28 6 2.9377 -6.0234 -0.5652 29 1 3.8975 -5.7712 -1.0161 30 1 -0.3633 0.0036 1.0277 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3633 -0.8917 -0.5108 33 1 5.4645 1.9081 0.4073 34 1 2.8414 3.6255 0.3299 35 1 4.5292 4.2419 0.7453 36 1 5.3546 3.5254 -1.5437 37 1 3.6666 2.9093 -1.9592 38 1 3.5257 -3.4034 0.0021 39 1 0.8496 -7.0095 1.3286 40 1 2.2433 -7.5911 2.2890 41 1 1.1401 -10.0451 3.2413 42 1 1.2595 -7.1758 -1.3404 43 1 2.8672 -7.8427 -1.7614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000959850208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:37 Heat of formation + Delta-G solvation = 96.938529 kcal Electronic energy + Delta-G solvation = -25017.643242 eV Core-core repulsion = 21385.457427 eV Total energy + Delta-G solvation = -3632.185814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -40.68086 -39.64311 -38.33734 -37.30666 -34.57215 -32.76405 -31.83681 -30.40086 -28.42362 -27.17767 -26.39200 -25.62962 -23.00007 -22.75703 -21.72296 -21.10421 -20.52043 -19.34998 -19.24002 -18.23441 -16.98563 -16.78642 -16.58037 -15.95489 -15.63431 -15.03878 -14.72476 -14.34096 -14.21679 -13.93077 -13.65719 -13.30162 -12.98955 -12.83462 -12.78611 -12.42477 -12.23495 -11.97896 -11.64197 -11.58175 -11.48681 -11.19027 -11.11656 -11.01259 -10.84901 -10.45530 -10.25111 -10.20851 -10.15903 -9.86877 -9.76396 -9.74906 -9.22139 -8.96297 -8.76564 -8.39394 -6.89075 -5.81053 -3.15855 -0.05425 0.82826 1.27258 2.13655 2.94913 3.00295 3.33132 3.37556 3.42601 3.44868 3.59013 4.23788 4.25673 4.32377 4.45209 4.47142 4.63419 4.79704 4.87495 5.08627 5.17399 5.29261 5.33087 5.34633 5.48541 5.53587 5.53894 5.60913 5.69029 5.72531 5.79494 5.86190 6.02076 6.17805 6.23636 6.47450 6.65219 6.72218 6.85342 7.29333 7.34066 7.44005 7.52203 7.70167 8.08641 8.18782 9.09111 9.71829 10.48499 11.33176 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.002135 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.154424 B =13113.180872 C =13522.348195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.153 3.847 3 N -0.478 5.478 4 C 0.095 3.905 5 C -0.105 4.105 6 C -0.147 4.147 7 C -0.153 4.153 8 S 0.165 5.835 9 C -0.299 4.299 10 C 0.600 3.400 11 O -0.518 6.518 12 N -0.692 5.692 13 C 0.100 3.900 14 H 0.136 0.864 15 C -0.181 4.181 16 H 0.103 0.897 17 C 0.185 3.815 18 N -0.593 5.593 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.914 5.914 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.156 3.844 28 C -0.183 4.183 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.131 0.869 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.395 0.605 39 H 0.027 0.973 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.028 0.972 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 26.088 -5.623 27.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.016 3.984 3 N -0.193 5.193 4 C -0.180 4.180 5 C -0.126 4.126 6 C -0.186 4.186 7 C -0.192 4.192 8 S 0.425 5.575 9 C -0.423 4.423 10 C 0.385 3.615 11 O -0.396 6.396 12 N -0.340 5.340 13 C -0.006 4.006 14 H 0.153 0.847 15 C -0.202 4.202 16 H 0.121 0.879 17 C 0.059 3.941 18 N -0.316 5.316 19 C -0.356 4.356 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.560 5.560 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.029 3.971 28 C -0.204 4.204 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.121 0.879 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.229 0.771 39 H 0.045 0.955 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.046 0.954 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.308 25.612 -5.455 27.187 hybrid contribution 0.183 -0.777 0.302 0.854 sum 7.490 24.835 -5.154 26.446 Atomic orbital electron populations 1.20688 0.85743 1.04562 1.03900 1.20650 0.98677 0.84746 0.94368 1.65977 1.04118 1.31401 1.17773 1.26318 0.93540 0.97573 1.00596 1.20601 0.97343 0.87525 1.07176 1.23039 1.02850 0.93738 0.98952 1.23073 1.03733 1.00552 0.91802 1.83816 1.05540 1.01758 1.66416 1.25486 0.95922 0.99152 1.21725 1.16577 0.86205 0.82110 0.76585 1.90801 1.14110 1.84722 1.49960 1.45272 1.09031 1.05405 1.74247 1.21892 0.98093 0.76427 1.04140 0.84650 1.24747 1.03636 0.99025 0.92810 0.87933 1.21071 0.94802 0.83385 0.94883 1.45188 1.81597 1.04205 1.00621 1.18991 1.32386 0.82063 1.02168 0.90486 1.24921 0.98883 0.98313 0.98179 1.69901 1.38866 1.36793 1.10453 0.86095 0.77813 0.83881 0.77813 1.21512 1.21630 1.20518 1.21122 0.96883 0.88205 0.90876 1.24339 1.00551 0.96954 0.98588 0.87804 0.89929 0.90806 0.87948 0.85157 0.87212 0.87843 0.87593 0.88155 0.77069 0.95504 0.89033 0.93489 0.95424 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.69 36.01 0.35 -0.68 16 2 C 0.15 1.93 6.79 -83.89 -0.57 1.36 16 3 N -0.48 -5.54 9.97 -7.70 -0.08 -5.62 16 4 C 0.09 0.91 6.96 -13.29 -0.09 0.82 16 5 C -0.10 -0.70 6.28 -91.77 -0.58 -1.28 16 6 C -0.15 -0.86 10.12 -26.73 -0.27 -1.13 16 7 C -0.15 -0.84 10.23 -26.73 -0.27 -1.11 16 8 S 0.17 1.56 22.31 -107.50 -2.40 -0.84 16 9 C -0.30 -3.81 6.48 -37.09 -0.24 -4.05 16 10 C 0.60 9.03 7.78 -12.86 -0.10 8.93 16 11 O -0.52 -9.23 13.84 5.20 0.07 -9.16 16 12 N -0.69 -9.82 5.56 -55.11 -0.31 -10.13 16 13 C 0.10 1.69 5.98 -67.93 -0.41 1.29 16 14 H 0.14 2.56 7.40 -51.93 -0.38 2.17 16 15 C -0.18 -3.44 7.06 -89.22 -0.63 -4.07 16 16 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 17 C 0.18 4.46 5.70 -2.41 -0.01 4.45 16 18 N -0.59 -15.15 3.38 -168.86 -0.57 -15.72 16 19 C -0.23 -6.32 10.35 -15.06 -0.16 -6.47 16 20 H 0.08 2.06 7.85 -52.48 -0.41 1.64 16 21 C -0.01 -0.16 5.40 -17.43 -0.09 -0.25 16 22 N -0.91 -26.80 10.86 55.49 0.60 -26.20 16 23 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.16 3.25 7.04 -2.41 -0.02 3.23 16 28 C -0.18 -3.21 7.06 -89.22 -0.63 -3.84 16 29 H 0.10 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.32 6.01 -51.93 -0.31 1.01 16 33 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.81 7.84 -51.93 -0.41 0.40 16 35 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.11 0.38 8.14 -51.94 -0.42 -0.05 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 4.65 8.01 -40.82 -0.33 4.33 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 2.46 6.51 -51.93 -0.34 2.12 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -32.06 371.20 -11.79 -43.85 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.97 Total: 4.17 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -3.72 Total: -2.81 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.35 Total: -57.66 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.40 Total: -0.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.06 -11.79 -43.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959850208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.793 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds