Wall clock time and date at job start Tue Mar 31 2020 16:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30934 * 122.90963 * 2 1 4 4 C 1.29426 * 117.36812 * 180.30592 * 3 2 1 5 5 C 1.50700 * 124.80893 * 179.69173 * 4 3 2 6 6 C 1.53002 * 117.49542 * 8.66054 * 5 4 3 7 7 C 1.53002 * 117.50100 * 300.03807 * 5 4 3 8 8 S 1.70958 * 110.38877 * 359.72314 * 4 3 2 9 9 C 1.35668 * 122.89922 * 179.80030 * 2 1 3 10 10 C 1.46681 * 126.13388 * 0.02562 * 9 2 1 11 11 O 1.21690 * 119.99483 * 359.71652 * 10 9 2 12 12 N 1.34770 * 119.99955 * 179.71331 * 10 9 2 13 13 C 1.46507 * 119.99805 * 179.97438 * 12 10 9 14 14 H 1.09000 * 115.49343 * 9.62731 * 13 12 10 15 15 C 1.52998 * 117.44340 * 224.23829 * 13 12 10 16 16 H 1.08997 * 120.26072 * 3.83654 * 15 13 12 17 17 C 1.54394 * 118.12045 * 160.80922 * 15 13 12 18 18 N 1.48147 * 104.61314 * 87.19574 * 17 15 13 19 19 C 1.36934 * 127.83786 * 140.42058 * 18 17 15 20 20 H 1.08003 * 120.00205 * 195.61401 * 19 18 17 21 21 C 1.38812 * 120.00069 * 15.60573 * 19 18 17 22 22 N 1.31624 * 119.99900 * 9.11396 * 21 19 18 23 23 Si 1.86805 * 120.00196 * 189.10944 * 21 19 18 24 24 H 1.48499 * 109.46994 * 90.00409 * 23 21 19 25 25 H 1.48494 * 109.46985 * 210.00398 * 23 21 19 26 26 H 1.48499 * 109.47118 * 330.00472 * 23 21 19 27 27 C 1.48149 * 104.32486 * 320.41221 * 18 17 15 28 28 C 1.53001 * 117.43975 * 154.99894 * 13 12 10 29 29 H 1.09001 * 120.26547 * 356.17546 * 28 13 12 30 30 H 1.08998 * 109.46937 * 270.19796 * 1 2 3 31 31 H 1.09002 * 109.46717 * 30.20067 * 1 2 3 32 32 H 1.08996 * 109.47065 * 150.19472 * 1 2 3 33 33 H 1.09000 * 115.55195 * 154.36002 * 5 4 3 34 34 H 1.08997 * 117.49934 * 0.02562 * 6 5 4 35 35 H 1.09005 * 117.49937 * 145.01910 * 6 5 4 36 36 H 1.08987 * 117.50160 * 214.97744 * 7 5 4 37 37 H 1.08999 * 117.49306 * 0.02562 * 7 5 4 38 38 H 0.96993 * 120.00492 * 0.02562 * 12 10 9 39 39 H 1.08997 * 110.40757 * 328.41167 * 17 15 13 40 40 H 1.08997 * 110.50477 * 206.03010 * 17 15 13 41 41 H 0.96999 * 119.99596 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.40728 * 280.80319 * 27 18 17 43 43 H 1.08999 * 110.40614 * 158.37731 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2185 1.0992 0.0000 4 6 3.5067 0.9743 -0.0061 5 6 4.4823 2.1227 -0.0138 6 6 3.9182 3.5303 0.1899 7 6 4.4162 3.0981 -1.1908 8 16 3.9447 -0.6782 -0.0052 9 6 2.2440 -1.1391 0.0040 10 6 1.7191 -2.5088 0.0082 11 8 0.5173 -2.6997 0.0136 12 7 2.5678 -3.5556 0.0061 13 6 2.0436 -4.9237 0.0109 14 1 0.9691 -5.0149 -0.1485 15 6 2.7040 -5.9286 0.9568 16 1 3.4896 -5.6056 1.6399 17 6 1.9212 -7.2087 1.3204 18 7 2.2595 -8.1714 0.2464 19 6 2.5019 -9.5137 0.3673 20 1 2.9789 -10.0511 -0.4390 21 6 2.1347 -10.1837 1.5262 22 7 1.3970 -9.5768 2.4317 23 14 2.6876 -11.9468 1.8009 24 1 3.9933 -11.9516 2.5083 25 1 1.6770 -12.6602 2.6223 26 1 2.8321 -12.6301 0.4904 27 6 2.2757 -7.3526 -0.9881 28 6 2.9377 -6.0234 -0.5652 29 1 3.8975 -5.7712 -1.0161 30 1 -0.3633 0.0036 1.0277 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3633 -0.8917 -0.5108 33 1 5.4645 1.9081 0.4073 34 1 2.8414 3.6255 0.3299 35 1 4.5292 4.2419 0.7453 36 1 5.3546 3.5254 -1.5437 37 1 3.6666 2.9093 -1.9592 38 1 3.5257 -3.4034 0.0021 39 1 0.8496 -7.0095 1.3286 40 1 2.2433 -7.5911 2.2890 41 1 1.1401 -10.0451 3.2413 42 1 1.2595 -7.1758 -1.3404 43 1 2.8672 -7.8427 -1.7614 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000959850208.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:35 Heat of formation + Delta-G solvation = 77.178146 kcal Electronic energy + Delta-G solvation = -25018.500116 eV Core-core repulsion = 21385.457427 eV Total energy + Delta-G solvation = -3633.042689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65294 -40.88256 -39.72457 -37.89222 -36.16995 -34.46600 -32.76993 -32.16828 -29.49484 -28.94517 -27.55340 -27.07492 -24.27713 -23.28011 -22.73334 -22.25437 -22.06351 -20.92682 -20.34153 -19.09952 -18.86340 -17.92618 -17.56679 -16.94270 -16.72506 -16.57484 -15.95508 -15.52771 -15.40382 -15.10241 -14.90093 -14.75918 -14.66163 -13.90588 -13.71759 -13.65339 -13.37808 -13.25867 -13.07377 -12.90014 -12.71643 -12.45741 -12.36748 -12.18317 -12.04737 -11.92159 -11.76943 -11.70325 -11.64635 -11.20655 -10.86454 -10.79733 -10.73023 -10.58920 -9.90808 -9.66416 -8.94144 -7.92516 -5.29905 -0.91801 0.03180 0.43932 1.21863 1.46649 1.48596 1.57790 1.73550 1.90517 2.47678 2.75155 2.79506 2.97776 3.27217 3.52160 3.61528 3.64150 3.78767 3.86251 3.86757 3.96982 4.03293 4.09193 4.22371 4.35297 4.48212 4.62681 4.64814 4.73478 4.80171 4.81672 4.85054 4.95406 4.97795 5.11057 5.22416 5.26466 5.29503 5.35463 5.42367 5.49278 5.62567 6.15169 6.24052 6.51683 6.94143 6.98646 7.65996 8.44121 9.21369 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.029775 B = 0.002135 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.154424 B =13113.180872 C =13522.348195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.150 3.850 3 N -0.498 5.498 4 C 0.096 3.904 5 C -0.118 4.118 6 C -0.146 4.146 7 C -0.142 4.142 8 S 0.222 5.778 9 C -0.334 4.334 10 C 0.600 3.400 11 O -0.554 6.554 12 N -0.680 5.680 13 C 0.121 3.879 14 H 0.113 0.887 15 C -0.186 4.186 16 H 0.122 0.878 17 C 0.189 3.811 18 N -0.617 5.617 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.949 5.949 23 Si 0.983 3.017 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.148 3.852 28 C -0.158 4.158 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.157 0.843 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.086 0.914 38 H 0.411 0.589 39 H -0.004 1.004 40 H 0.058 0.942 41 H 0.250 0.750 42 H 0.022 0.978 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.538 27.895 -6.720 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.011 3.989 3 N -0.214 5.214 4 C -0.177 4.177 5 C -0.140 4.140 6 C -0.185 4.185 7 C -0.181 4.181 8 S 0.483 5.517 9 C -0.458 4.458 10 C 0.387 3.613 11 O -0.434 6.434 12 N -0.329 5.329 13 C 0.014 3.986 14 H 0.131 0.869 15 C -0.207 4.207 16 H 0.140 0.860 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.811 3.189 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.023 3.977 28 C -0.179 4.179 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.174 0.826 34 H 0.109 0.891 35 H 0.144 0.856 36 H 0.150 0.850 37 H 0.105 0.895 38 H 0.248 0.752 39 H 0.014 0.986 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.039 0.961 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.465 27.446 -6.589 30.104 hybrid contribution -0.797 -1.206 0.592 1.562 sum 9.668 26.241 -5.997 28.601 Atomic orbital electron populations 1.20632 0.85856 1.04328 1.03872 1.20821 0.99125 0.85196 0.93795 1.66050 1.05036 1.30964 1.19300 1.26998 0.93560 0.98960 0.98226 1.20938 0.97650 0.86819 1.08576 1.23093 1.02188 0.93578 0.99673 1.23155 1.04473 0.99401 0.91108 1.83511 1.02136 1.00761 1.65306 1.25277 0.98543 0.97721 1.24229 1.16880 0.85765 0.83033 0.75581 1.90787 1.15727 1.85456 1.51455 1.45032 1.09817 1.03922 1.74119 1.21437 0.97082 0.77718 1.02374 0.86873 1.24424 1.04005 0.98053 0.94265 0.86036 1.20773 0.93661 0.85722 0.93516 1.45491 1.81673 1.04277 1.02630 1.19410 1.31720 0.83383 1.02303 0.89701 1.25807 0.99391 1.02537 0.98147 1.70111 1.40451 1.38306 1.10798 0.85013 0.76989 0.78956 0.77966 1.21032 1.22291 1.19015 1.21281 0.97247 0.89456 0.89734 1.24260 1.01508 0.95342 0.96764 0.84118 0.89858 0.89393 0.89690 0.82595 0.89116 0.85569 0.84999 0.89528 0.75224 0.98641 0.92390 0.94125 0.96059 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.69 71.24 0.69 -1.37 16 2 C 0.15 3.70 6.79 42.10 0.29 3.98 16 3 N -0.50 -10.98 9.97 -178.28 -1.78 -12.76 16 4 C 0.10 1.65 6.96 88.46 0.62 2.26 16 5 C -0.12 -1.20 6.28 -11.54 -0.07 -1.28 16 6 C -0.15 -1.34 10.12 30.60 0.31 -1.03 16 7 C -0.14 -1.14 10.23 30.60 0.31 -0.82 16 8 S 0.22 3.61 22.31 -56.49 -1.26 2.35 16 9 C -0.33 -8.20 6.48 23.88 0.15 -8.04 16 10 C 0.60 17.87 7.78 86.45 0.67 18.54 16 11 O -0.55 -20.30 13.84 -4.32 -0.06 -20.36 16 12 N -0.68 -18.31 5.56 -446.50 -2.48 -20.79 16 13 C 0.12 4.01 5.98 44.99 0.27 4.28 16 14 H 0.11 4.39 7.40 -2.39 -0.02 4.37 16 15 C -0.19 -7.00 7.06 -9.89 -0.07 -7.07 16 16 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 17 C 0.19 9.52 5.70 86.54 0.49 10.01 16 18 N -0.62 -32.01 3.38 -688.14 -2.33 -34.33 16 19 C -0.24 -13.40 10.35 84.03 0.87 -12.53 16 20 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 21 C -0.07 -3.72 5.40 84.86 0.46 -3.26 16 22 N -0.95 -57.77 10.86 21.65 0.24 -57.53 16 23 Si 0.98 45.50 29.56 68.60 2.03 47.53 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.15 6.10 7.04 86.53 0.61 6.71 16 28 C -0.16 -5.23 7.06 -9.89 -0.07 -5.30 16 29 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 2.30 6.01 -2.39 -0.01 2.29 16 33 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.22 7.84 -2.39 -0.02 1.20 16 35 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 36 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 8.51 8.01 -92.71 -0.74 7.77 16 39 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.06 3.28 6.51 -2.39 -0.02 3.26 16 41 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.59 371.20 0.19 -72.39 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.30 Total: 18.40 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.53 Total: 5.09 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -6.35 Total: -125.41 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.26 Total: 2.35 kcal Total: -72.59 0.19 -72.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000959850208.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.572 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds