Wall clock time and date at job start Tue Mar 31 2020 18:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45763 * 2 1 4 4 C 1.53044 * 109.45839 * 119.95385 * 2 1 3 5 5 C 1.53192 * 109.31077 * 181.38770 * 4 2 1 6 6 N 1.46920 * 108.77815 * 305.36776 * 5 4 2 7 7 C 1.36941 * 120.63063 * 233.59199 * 6 5 4 8 8 H 1.08002 * 120.00141 * 27.67906 * 7 6 5 9 9 C 1.38807 * 119.99671 * 207.68446 * 7 6 5 10 10 N 1.31624 * 120.00628 * 17.36526 * 9 7 6 11 11 Si 1.86803 * 119.99852 * 197.36243 * 9 7 6 12 12 H 1.48496 * 109.46884 * 60.00098 * 11 9 7 13 13 H 1.48496 * 109.47172 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47027 * 300.00215 * 11 9 7 15 15 C 1.46924 * 118.73826 * 53.60658 * 6 5 4 16 16 C 1.53030 * 109.46171 * 240.02493 * 2 1 3 17 17 H 1.09003 * 109.50008 * 58.63027 * 16 2 1 18 18 N 1.46500 * 109.49948 * 298.56355 * 16 2 1 19 19 C 1.34778 * 120.00044 * 155.00091 * 18 16 2 20 20 O 1.21728 * 120.00090 * 0.02562 * 19 18 16 21 21 C 1.46489 * 119.99865 * 180.02562 * 19 18 16 22 22 C 1.36115 * 125.70907 * 180.02562 * 21 19 18 23 23 C 1.42232 * 107.62509 * 180.18941 * 22 21 19 24 24 C 1.45596 * 140.77526 * 180.52325 * 23 22 21 25 25 C 1.31809 * 114.63270 * 179.49577 * 24 23 22 26 26 S 1.75350 * 111.24502 * 359.77287 * 25 24 23 27 27 C 1.38168 * 106.99414 * 359.63335 * 23 22 21 28 28 N 1.37462 * 108.16966 * 0.36382 * 27 23 22 29 29 H 0.97001 * 125.68495 * 179.74649 * 28 27 23 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47407 * 299.97484 * 1 2 3 32 32 H 1.09004 * 109.46787 * 59.97589 * 1 2 3 33 33 H 1.09004 * 109.49472 * 301.33963 * 4 2 1 34 34 H 1.08994 * 109.49428 * 61.43887 * 4 2 1 35 35 H 1.08999 * 109.58638 * 65.15597 * 5 4 2 36 36 H 1.09001 * 109.58555 * 185.43604 * 5 4 2 37 37 H 0.96993 * 119.99954 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58787 * 186.60699 * 15 6 5 39 39 H 1.08997 * 109.58864 * 66.18524 * 15 6 5 40 40 H 0.96995 * 120.00247 * 335.00327 * 18 16 2 41 41 H 1.07999 * 126.19081 * 359.91990 * 22 21 19 42 42 H 1.07999 * 122.67986 * 359.26872 * 24 23 22 43 43 H 1.08001 * 124.37796 * 179.77022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5714 -0.6883 1.2645 6 7 4.0679 -1.2487 0.0004 7 6 4.9765 -2.2733 0.0006 8 1 5.0097 -2.9654 0.8290 9 6 5.8547 -2.4222 -1.0640 10 7 6.0606 -1.4205 -1.8926 11 14 6.7447 -4.0444 -1.3206 12 1 5.7498 -5.1283 -1.5219 13 1 7.6178 -3.9461 -2.5177 14 1 7.5734 -4.3487 -0.1265 15 6 3.5714 -0.6887 -1.2640 16 6 2.0399 -0.7209 -1.2499 17 1 1.6568 -0.2214 -2.1397 18 7 1.5802 -2.1118 -1.2339 19 6 1.4518 -2.7925 -2.3900 20 8 1.7181 -2.2516 -3.4475 21 6 0.9916 -4.1831 -2.3740 22 6 0.8213 -4.9762 -3.4670 23 6 0.3607 -6.2428 -3.0125 24 6 -0.0227 -7.5523 -3.5206 25 6 -0.3844 -8.4168 -2.5937 26 16 -0.2848 -7.7101 -0.9920 27 6 0.2755 -6.1711 -1.6353 28 7 0.6588 -4.9093 -1.2473 29 1 0.6900 -4.5832 -0.3343 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2203 2.1399 34 1 1.6978 -1.7553 1.2386 35 1 3.9142 0.3413 1.3674 36 1 3.9416 -1.2820 2.1003 37 1 6.6740 -1.5248 -2.6366 38 1 3.9418 -1.2847 -2.0981 39 1 3.9143 0.3408 -1.3673 40 1 1.3683 -2.5429 -0.3912 41 1 0.9991 -4.6935 -4.4941 42 1 -0.0151 -7.7945 -4.5730 43 1 -0.7013 -9.4295 -2.7948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967626154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:23 Heat of formation + Delta-G solvation = 54.513970 kcal Electronic energy + Delta-G solvation = -27089.273992 eV Core-core repulsion = 23455.248510 eV Total energy + Delta-G solvation = -3634.025481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.21121 -39.37926 -37.47771 -35.33691 -34.20237 -32.90393 -31.07686 -30.38036 -29.64449 -28.17958 -27.27307 -24.21161 -23.40372 -22.86438 -21.91134 -21.15524 -20.03540 -19.42736 -19.22558 -18.68849 -16.83684 -16.62070 -15.35250 -15.17359 -15.00496 -14.80373 -14.56264 -14.21330 -13.99394 -13.78986 -13.66489 -13.41636 -13.23768 -12.99441 -12.79512 -12.56738 -12.00366 -11.86765 -11.69936 -11.62448 -11.45069 -11.16729 -10.94738 -10.88217 -10.72793 -10.57766 -10.28042 -9.98087 -9.81232 -9.63451 -9.52666 -9.44700 -8.52879 -8.47484 -8.25703 -7.65331 -6.68898 -5.79361 -3.22620 1.04571 1.32280 1.54187 1.93219 2.95915 3.15852 3.37715 3.45091 3.46219 3.51412 3.79013 4.48752 4.68229 4.95143 5.06496 5.15468 5.16086 5.27990 5.38412 5.41325 5.50302 5.63449 5.73865 5.79381 5.85344 5.91911 6.07151 6.07527 6.20512 6.22852 6.29179 6.36200 6.43872 6.50320 6.56781 6.68109 6.75333 6.81158 6.90440 7.18345 7.30516 7.63135 7.77336 7.95216 8.43705 8.60642 9.18787 9.82895 10.38030 11.28480 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.004627 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.455021 B = 6049.595399 C = 7345.620301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.080 0.920 18 N -0.694 5.694 19 C 0.585 3.415 20 O -0.528 6.528 21 C 0.010 3.990 22 C -0.079 4.079 23 C -0.163 4.163 24 C -0.067 4.067 25 C -0.226 4.226 26 S 0.123 5.877 27 C -0.012 4.012 28 N -0.522 5.522 29 H 0.420 0.580 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.053 0.947 37 H 0.255 0.745 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.389 0.611 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 -7.408 2.763 17.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.080 0.920 9 C -0.189 4.189 10 N -0.539 5.539 11 Si 0.726 3.274 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.210 1.210 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.098 0.902 18 N -0.344 5.344 19 C 0.370 3.630 20 O -0.404 6.404 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.176 4.176 24 C -0.097 4.097 25 C -0.360 4.360 26 S 0.376 5.624 27 C -0.241 4.241 28 N -0.125 5.125 29 H 0.258 0.742 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.223 0.777 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.638 -7.396 3.385 17.627 hybrid contribution 0.836 -0.446 -0.627 1.136 sum -14.802 -7.842 2.758 16.976 Atomic orbital electron populations 1.21852 0.95965 1.01205 1.01141 1.21329 0.94589 1.00054 0.95390 0.90168 1.22083 0.99392 0.99087 0.96214 1.20927 0.90566 0.96648 0.90330 1.43971 1.48295 1.39606 0.99096 1.19001 1.10305 1.03236 1.06256 0.92017 1.24984 0.97067 0.97138 0.99748 1.69980 1.37321 1.28972 1.17638 0.86475 0.79390 0.84180 0.77369 1.21049 1.21483 1.20965 1.21222 0.86490 0.97951 0.91060 1.21864 0.99121 0.79810 0.97142 0.90238 1.45721 1.66765 1.14443 1.07469 1.16840 0.78042 0.83328 0.84759 1.90850 1.50869 1.68149 1.30541 1.20303 1.10454 0.93875 0.85702 1.20704 1.01427 0.90104 0.98421 1.19369 1.11292 0.95779 0.91123 1.20330 0.98848 0.90285 1.00266 1.24802 1.12376 1.04030 0.94818 1.83795 1.71924 0.99075 1.07645 1.23480 1.10765 0.92182 0.97649 1.41438 1.54217 1.08070 1.08743 0.74227 0.93323 0.93058 0.92924 0.92662 0.93165 0.96339 0.92847 0.93443 0.88359 0.95484 0.77702 0.82676 0.83887 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.05 37.16 0.34 -1.43 16 2 C -0.09 -1.41 2.48 -90.58 -0.22 -1.64 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.06 16 5 C 0.14 2.74 6.51 -3.71 -0.02 2.71 16 6 N -0.59 -13.87 2.91 -172.32 -0.50 -14.37 16 7 C -0.26 -6.90 9.59 -15.06 -0.14 -7.05 16 8 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 9 C 0.01 0.29 4.91 -17.43 -0.09 0.20 16 10 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 11 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 15 C 0.16 3.73 4.91 -3.71 -0.02 3.71 16 16 C 0.13 2.32 2.24 -67.81 -0.15 2.16 16 17 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 18 N -0.69 -12.02 4.25 -55.05 -0.23 -12.25 16 19 C 0.58 11.16 7.75 -12.94 -0.10 11.06 16 20 O -0.53 -11.83 16.51 5.16 0.09 -11.74 16 21 C 0.01 0.17 6.97 -82.47 -0.57 -0.40 16 22 C -0.08 -1.28 10.58 -38.81 -0.41 -1.69 16 23 C -0.16 -2.38 6.80 -105.46 -0.72 -3.10 16 24 C -0.07 -0.77 10.42 -38.54 -0.40 -1.17 16 25 C -0.23 -2.27 11.03 28.84 0.32 -1.95 16 26 S 0.12 1.33 23.24 -107.50 -2.50 -1.17 16 27 C -0.01 -0.17 8.41 -15.05 -0.13 -0.29 16 28 N -0.52 -7.37 6.08 -7.94 -0.05 -7.41 16 29 H 0.42 4.88 8.14 -40.82 -0.33 4.55 16 30 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.10 2.74 6.04 -51.93 -0.31 2.42 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 5.92 5.71 -40.82 -0.23 5.68 16 41 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 42 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -32.18 360.51 -10.40 -42.58 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.76 Total: 8.29 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.46 Total: -0.94 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.16 Total: -59.73 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.18 -10.40 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.094 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds