Wall clock time and date at job start Tue Mar 31 2020 18:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.45763 * 2 1 4 4 C 1.53044 * 109.45839 * 119.95385 * 2 1 3 5 5 C 1.53192 * 109.31077 * 181.38770 * 4 2 1 6 6 N 1.46920 * 108.77815 * 305.36776 * 5 4 2 7 7 C 1.36941 * 120.63063 * 233.59199 * 6 5 4 8 8 H 1.08002 * 120.00141 * 27.67906 * 7 6 5 9 9 C 1.38807 * 119.99671 * 207.68446 * 7 6 5 10 10 N 1.31624 * 120.00628 * 17.36526 * 9 7 6 11 11 Si 1.86803 * 119.99852 * 197.36243 * 9 7 6 12 12 H 1.48496 * 109.46884 * 60.00098 * 11 9 7 13 13 H 1.48496 * 109.47172 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47027 * 300.00215 * 11 9 7 15 15 C 1.46924 * 118.73826 * 53.60658 * 6 5 4 16 16 C 1.53030 * 109.46171 * 240.02493 * 2 1 3 17 17 H 1.09003 * 109.50008 * 58.63027 * 16 2 1 18 18 N 1.46500 * 109.49948 * 298.56355 * 16 2 1 19 19 C 1.34778 * 120.00044 * 155.00091 * 18 16 2 20 20 O 1.21728 * 120.00090 * 0.02562 * 19 18 16 21 21 C 1.46489 * 119.99865 * 180.02562 * 19 18 16 22 22 C 1.36115 * 125.70907 * 180.02562 * 21 19 18 23 23 C 1.42232 * 107.62509 * 180.18941 * 22 21 19 24 24 C 1.45596 * 140.77526 * 180.52325 * 23 22 21 25 25 C 1.31809 * 114.63270 * 179.49577 * 24 23 22 26 26 S 1.75350 * 111.24502 * 359.77287 * 25 24 23 27 27 C 1.38168 * 106.99414 * 359.63335 * 23 22 21 28 28 N 1.37462 * 108.16966 * 0.36382 * 27 23 22 29 29 H 0.97001 * 125.68495 * 179.74649 * 28 27 23 30 30 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47407 * 299.97484 * 1 2 3 32 32 H 1.09004 * 109.46787 * 59.97589 * 1 2 3 33 33 H 1.09004 * 109.49472 * 301.33963 * 4 2 1 34 34 H 1.08994 * 109.49428 * 61.43887 * 4 2 1 35 35 H 1.08999 * 109.58638 * 65.15597 * 5 4 2 36 36 H 1.09001 * 109.58555 * 185.43604 * 5 4 2 37 37 H 0.96993 * 119.99954 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.58787 * 186.60699 * 15 6 5 39 39 H 1.08997 * 109.58864 * 66.18524 * 15 6 5 40 40 H 0.96995 * 120.00247 * 335.00327 * 18 16 2 41 41 H 1.07999 * 126.19081 * 359.91990 * 22 21 19 42 42 H 1.07999 * 122.67986 * 359.26872 * 24 23 22 43 43 H 1.08001 * 124.37796 * 179.77022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7205 1.2503 5 6 3.5714 -0.6883 1.2645 6 7 4.0679 -1.2487 0.0004 7 6 4.9765 -2.2733 0.0006 8 1 5.0097 -2.9654 0.8290 9 6 5.8547 -2.4222 -1.0640 10 7 6.0606 -1.4205 -1.8926 11 14 6.7447 -4.0444 -1.3206 12 1 5.7498 -5.1283 -1.5219 13 1 7.6178 -3.9461 -2.5177 14 1 7.5734 -4.3487 -0.1265 15 6 3.5714 -0.6887 -1.2640 16 6 2.0399 -0.7209 -1.2499 17 1 1.6568 -0.2214 -2.1397 18 7 1.5802 -2.1118 -1.2339 19 6 1.4518 -2.7925 -2.3900 20 8 1.7181 -2.2516 -3.4475 21 6 0.9916 -4.1831 -2.3740 22 6 0.8213 -4.9762 -3.4670 23 6 0.3607 -6.2428 -3.0125 24 6 -0.0227 -7.5523 -3.5206 25 6 -0.3844 -8.4168 -2.5937 26 16 -0.2848 -7.7101 -0.9920 27 6 0.2755 -6.1711 -1.6353 28 7 0.6588 -4.9093 -1.2473 29 1 0.6900 -4.5832 -0.3343 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2203 2.1399 34 1 1.6978 -1.7553 1.2386 35 1 3.9142 0.3413 1.3674 36 1 3.9416 -1.2820 2.1003 37 1 6.6740 -1.5248 -2.6366 38 1 3.9418 -1.2847 -2.0981 39 1 3.9143 0.3408 -1.3673 40 1 1.3683 -2.5429 -0.3912 41 1 0.9991 -4.6935 -4.4941 42 1 -0.0151 -7.7945 -4.5730 43 1 -0.7013 -9.4295 -2.7948 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967626154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:22 Heat of formation + Delta-G solvation = 34.183441 kcal Electronic energy + Delta-G solvation = -27090.155590 eV Core-core repulsion = 23455.248510 eV Total energy + Delta-G solvation = -3634.907079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.38785 -40.83320 -39.01940 -36.32301 -35.97046 -34.41109 -32.87216 -31.55256 -31.16806 -29.40246 -28.81432 -25.94652 -24.75661 -23.94597 -23.29298 -22.76002 -21.27002 -20.66033 -20.45863 -20.05258 -18.66225 -17.90098 -16.96800 -16.76499 -16.30622 -16.01263 -15.73041 -15.58093 -15.46288 -15.33438 -15.01459 -14.85778 -14.55211 -14.48902 -14.15292 -13.78839 -13.57510 -13.17466 -13.06219 -12.80907 -12.75347 -12.66480 -12.60420 -12.52442 -12.30462 -11.98932 -11.77120 -11.60739 -11.40937 -11.17983 -11.10649 -10.57195 -10.55882 -10.09300 -9.28192 -8.69313 -8.62384 -7.89632 -5.33770 0.07416 0.23718 0.43043 1.06700 1.36097 1.41307 1.45046 1.83851 2.02201 2.17836 2.40105 2.45272 3.26438 3.62917 3.66792 3.82586 3.85664 3.95108 4.01928 4.08808 4.43790 4.47800 4.62619 4.63540 4.67720 4.75128 4.77352 4.85972 4.92503 5.04647 5.13390 5.14460 5.18238 5.21141 5.24408 5.42370 5.42883 5.45637 5.55513 5.62901 5.66216 5.69972 6.13071 6.36031 6.52810 7.11673 7.14847 7.85141 8.35240 9.15083 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.004627 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.455021 B = 6049.595399 C = 7345.620301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.251 4.251 8 H 0.069 0.931 9 C -0.046 4.046 10 N -0.931 5.931 11 Si 0.950 3.050 12 H -0.287 1.287 13 H -0.299 1.299 14 H -0.269 1.269 15 C 0.169 3.831 16 C 0.137 3.863 17 H 0.069 0.931 18 N -0.683 5.683 19 C 0.581 3.419 20 O -0.573 6.573 21 C -0.013 4.013 22 C -0.092 4.092 23 C -0.182 4.182 24 C -0.088 4.088 25 C -0.210 4.210 26 S 0.162 5.838 27 C -0.024 4.024 28 N -0.514 5.514 29 H 0.430 0.570 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.246 0.754 38 H 0.049 0.951 39 H 0.001 0.999 40 H 0.401 0.599 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 -9.628 5.236 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.382 4.382 8 H 0.086 0.914 9 C -0.242 4.242 10 N -0.577 5.577 11 Si 0.779 3.221 12 H -0.214 1.214 13 H -0.226 1.226 14 H -0.194 1.194 15 C 0.042 3.958 16 C 0.031 3.969 17 H 0.087 0.913 18 N -0.332 5.332 19 C 0.369 3.631 20 O -0.453 6.453 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.195 4.195 24 C -0.118 4.118 25 C -0.343 4.343 26 S 0.415 5.585 27 C -0.253 4.253 28 N -0.119 5.119 29 H 0.270 0.730 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.238 0.762 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.199 -9.625 5.945 21.428 hybrid contribution 1.587 0.166 -1.344 2.086 sum -16.612 -9.458 4.601 19.662 Atomic orbital electron populations 1.21768 0.93042 1.01998 1.02461 1.21289 0.96844 0.99340 0.93169 0.90148 1.21968 0.95632 1.00262 0.97612 1.21151 0.93672 0.96028 0.88137 1.44162 1.48067 1.39441 1.00649 1.19351 1.09506 1.03652 1.05662 0.91356 1.25646 0.98709 0.99539 1.00332 1.70145 1.38579 1.30695 1.18269 0.85601 0.78296 0.81008 0.77192 1.21397 1.22575 1.19426 1.20896 0.89908 0.95262 0.89690 1.21573 0.95388 0.80905 0.99084 0.91303 1.45568 1.65954 1.13997 1.07692 1.17204 0.77291 0.84212 0.84435 1.90814 1.52953 1.69429 1.32108 1.19913 1.12602 0.93082 0.87089 1.20878 1.01524 0.91331 0.98310 1.19723 1.11556 0.96350 0.91823 1.20534 1.00166 0.89207 1.01882 1.25321 1.09924 1.05164 0.93917 1.83757 1.70690 0.96364 1.07697 1.24052 1.10103 0.92944 0.98236 1.41280 1.53983 1.08082 1.08514 0.73025 0.92794 0.90366 0.93042 0.88855 0.92202 0.96758 0.92461 0.94528 0.93284 0.98128 0.76231 0.83222 0.81908 0.77757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.05 71.98 0.65 -2.22 16 2 C -0.09 -2.44 2.48 -10.77 -0.03 -2.47 16 3 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 4 C -0.12 -3.11 5.20 30.67 0.16 -2.95 16 5 C 0.14 5.03 6.51 86.36 0.56 5.59 16 6 N -0.60 -28.72 2.91 -699.11 -2.04 -30.76 16 7 C -0.25 -13.57 9.59 84.03 0.81 -12.77 16 8 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 9 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 10 N -0.93 -57.53 11.19 21.65 0.24 -57.29 16 11 Si 0.95 47.05 29.59 68.60 2.03 49.08 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.17 8.32 4.91 86.36 0.42 8.74 16 16 C 0.14 5.10 2.24 45.07 0.10 5.20 16 17 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 18 N -0.68 -23.79 4.25 -446.30 -1.90 -25.68 16 19 C 0.58 23.07 7.75 86.39 0.67 23.74 16 20 O -0.57 -27.41 16.51 -4.44 -0.07 -27.49 16 21 C -0.01 -0.45 6.97 39.81 0.28 -0.17 16 22 C -0.09 -3.08 10.58 22.77 0.24 -2.84 16 23 C -0.18 -5.16 6.80 -20.40 -0.14 -5.30 16 24 C -0.09 -1.83 10.42 23.40 0.24 -1.58 16 25 C -0.21 -3.40 11.03 67.05 0.74 -2.66 16 26 S 0.16 2.99 23.24 -56.49 -1.31 1.67 16 27 C -0.02 -0.64 8.41 83.79 0.70 0.06 16 28 N -0.51 -14.10 6.08 -179.04 -1.09 -15.19 16 29 H 0.43 9.36 8.14 -92.71 -0.75 8.61 16 30 H 0.05 1.10 7.54 -2.39 -0.02 1.08 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.06 1.52 6.40 -2.39 -0.02 1.50 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 2.07 7.94 -2.39 -0.02 2.05 16 37 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 39 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 40 H 0.40 11.75 5.71 -92.71 -0.53 11.22 16 41 H 0.15 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 43 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.59 360.51 1.47 -73.12 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.23 Total: 24.41 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.83 Total: 8.12 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -4.78 Total: -128.92 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.07 Total: -27.49 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.31 Total: 1.67 kcal Total: -74.59 1.47 -73.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.302 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds