Wall clock time and date at job start Tue Mar 31 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45087 * 2 1 4 4 C 1.53040 * 109.46081 * 240.03024 * 2 1 3 5 5 C 1.53193 * 109.31454 * 178.61394 * 4 2 1 6 6 N 1.46921 * 108.77263 * 54.63557 * 5 4 2 7 7 C 1.36942 * 120.62994 * 126.41419 * 6 5 4 8 8 H 1.08002 * 119.99589 * 331.83064 * 7 6 5 9 9 C 1.38810 * 120.00448 * 151.83443 * 7 6 5 10 10 N 1.31624 * 119.99631 * 343.06711 * 9 7 6 11 11 Si 1.86800 * 120.00434 * 163.06799 * 9 7 6 12 12 H 1.48497 * 109.46916 * 90.00052 * 11 9 7 13 13 H 1.48502 * 109.47182 * 210.00025 * 11 9 7 14 14 H 1.48500 * 109.46770 * 329.99955 * 11 9 7 15 15 C 1.46996 * 118.76091 * 306.39284 * 6 5 4 16 16 C 1.53044 * 109.45967 * 119.96404 * 2 1 3 17 17 H 1.09000 * 109.49741 * 301.37278 * 16 2 1 18 18 N 1.46504 * 109.49731 * 61.43242 * 16 2 1 19 19 C 1.34773 * 119.99992 * 204.93357 * 18 16 2 20 20 O 1.21721 * 119.99942 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99870 * 180.02562 * 19 18 16 22 22 C 1.36106 * 125.71328 * 180.02562 * 21 19 18 23 23 C 1.42223 * 107.63138 * 180.02562 * 22 21 19 24 24 C 1.45593 * 140.78519 * 180.35547 * 23 22 21 25 25 C 1.31811 * 114.63754 * 180.09438 * 24 23 22 26 26 S 1.75357 * 111.24154 * 359.54653 * 25 24 23 27 27 C 1.38176 * 106.99353 * 359.97438 * 23 22 21 28 28 N 1.37465 * 108.16652 * 0.02562 * 27 23 22 29 29 H 0.96997 * 125.68352 * 180.02562 * 28 27 23 30 30 H 1.08997 * 109.47009 * 300.03644 * 1 2 3 31 31 H 1.08997 * 109.47215 * 60.03429 * 1 2 3 32 32 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.49876 * 298.57148 * 4 2 1 34 34 H 1.09007 * 109.49202 * 58.66373 * 4 2 1 35 35 H 1.08993 * 109.58588 * 174.42486 * 5 4 2 36 36 H 1.08999 * 109.58360 * 294.70884 * 5 4 2 37 37 H 0.96994 * 120.00102 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58249 * 293.83311 * 15 6 5 39 39 H 1.08998 * 109.63208 * 173.38048 * 15 6 5 40 40 H 0.97004 * 119.99584 * 24.93379 * 18 16 2 41 41 H 1.08007 * 126.18572 * 0.03730 * 22 21 19 42 42 H 1.08003 * 122.68110 * 359.91118 * 24 23 22 43 43 H 1.07994 * 124.37798 * 179.80441 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9764 -2.2734 0.0001 8 1 5.0044 -2.9703 -0.8245 9 6 5.8613 -2.4164 1.0600 10 7 6.0658 -1.4127 1.8865 11 14 6.7620 -4.0332 1.3133 12 1 8.0465 -4.0062 0.5686 13 1 7.0327 -4.2276 2.7604 14 1 5.9227 -5.1511 0.8121 15 6 3.5714 -0.6886 1.2651 16 6 2.0399 -0.7207 1.2501 17 1 1.6567 -0.2210 2.1399 18 7 1.5801 -2.1117 1.2344 19 6 1.4528 -2.7925 2.3905 20 8 1.7194 -2.2515 3.4479 21 6 0.9936 -4.1835 2.3747 22 6 0.8236 -4.9765 3.4677 23 6 0.3688 -6.2450 3.0130 24 6 -0.0245 -7.5512 3.5220 25 6 -0.3804 -8.4178 2.5948 26 16 -0.2811 -7.7112 0.9930 27 6 0.2780 -6.1717 1.6362 28 7 0.6609 -4.9099 1.2480 29 1 0.6917 -4.5837 0.3350 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 -1.2383 34 1 1.6572 -0.2207 -2.1398 35 1 3.9417 -1.2846 -2.0983 36 1 3.9142 0.3406 -1.3699 37 1 6.6838 -1.5126 2.6273 38 1 3.9142 0.3409 1.3682 39 1 3.9412 -1.2844 2.0996 40 1 1.3673 -2.5426 0.3918 41 1 1.0016 -4.6936 4.4947 42 1 -0.0218 -7.7918 4.5749 43 1 -0.6967 -9.4306 2.7960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967626157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:28 Heat of formation + Delta-G solvation = 54.411043 kcal Electronic energy + Delta-G solvation = -27084.088289 eV Core-core repulsion = 23450.058344 eV Total energy + Delta-G solvation = -3634.029945 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.21386 -39.37938 -37.47719 -35.33868 -34.19944 -32.90417 -31.07630 -30.38310 -29.64624 -28.18065 -27.27296 -24.21086 -23.40521 -22.86589 -21.91030 -21.15733 -20.03686 -19.42922 -19.22674 -18.68834 -16.83788 -16.62197 -15.35366 -15.17335 -15.00812 -14.80664 -14.56229 -14.21448 -13.99116 -13.79176 -13.66663 -13.41641 -13.23880 -12.99507 -12.79545 -12.57003 -12.00461 -11.86940 -11.70026 -11.62508 -11.45020 -11.16724 -10.95092 -10.88330 -10.72895 -10.58107 -10.27343 -9.98277 -9.81151 -9.63402 -9.52811 -9.45014 -8.52922 -8.48055 -8.25896 -7.65564 -6.68106 -5.79606 -3.23184 1.04435 1.32039 1.53931 1.93072 2.95710 3.15636 3.36926 3.45550 3.46158 3.51273 3.78732 4.48509 4.68030 4.94890 5.06328 5.15381 5.16083 5.27939 5.38681 5.41160 5.50050 5.63235 5.73664 5.79326 5.85371 5.91880 6.06967 6.07574 6.20457 6.22743 6.29200 6.36180 6.43802 6.50187 6.56771 6.68220 6.75125 6.81133 6.90407 7.18119 7.30442 7.63084 7.77429 7.95065 8.43748 8.60480 9.18635 9.82687 10.38082 11.28327 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004623 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.254396 B = 6055.450186 C = 7354.257369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.062 0.938 9 C 0.010 3.990 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.287 1.287 13 H -0.288 1.288 14 H -0.281 1.281 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.080 0.920 18 N -0.694 5.694 19 C 0.585 3.415 20 O -0.527 6.527 21 C 0.010 3.990 22 C -0.079 4.079 23 C -0.163 4.163 24 C -0.067 4.067 25 C -0.226 4.226 26 S 0.123 5.877 27 C -0.012 4.012 28 N -0.522 5.522 29 H 0.420 0.580 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.019 0.981 37 H 0.255 0.745 38 H 0.027 0.973 39 H 0.098 0.902 40 H 0.389 0.611 41 H 0.156 0.844 42 H 0.144 0.856 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.758 -7.435 -2.745 17.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.214 1.214 13 H -0.214 1.214 14 H -0.206 1.206 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.098 0.902 18 N -0.344 5.344 19 C 0.370 3.630 20 O -0.404 6.404 21 C -0.103 4.103 22 C -0.107 4.107 23 C -0.175 4.175 24 C -0.097 4.097 25 C -0.360 4.360 26 S 0.376 5.624 27 C -0.241 4.241 28 N -0.125 5.125 29 H 0.258 0.742 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.116 0.884 40 H 0.223 0.777 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.683 -7.428 -3.368 17.677 hybrid contribution 0.853 -0.432 0.628 1.144 sum -14.831 -7.860 -2.740 17.007 Atomic orbital electron populations 1.21849 0.95965 1.01205 1.01143 1.21327 0.94588 1.00053 0.95386 0.90168 1.22082 0.99395 0.99083 0.96211 1.20927 0.90563 0.96645 0.90333 1.43992 1.48314 1.39601 0.99084 1.19027 1.10005 1.03045 1.06644 0.92031 1.24999 0.97052 0.97134 0.99769 1.69986 1.37091 1.28946 1.17886 0.86413 0.79685 0.83988 0.77374 1.21385 1.21390 1.20650 1.21227 0.86475 0.97945 0.91031 1.21866 0.99116 0.79811 0.97141 0.90248 1.45725 1.66748 1.14446 1.07481 1.16839 0.78053 0.83330 0.84756 1.90850 1.50844 1.68151 1.30554 1.20305 1.10478 0.93864 0.85697 1.20701 1.01513 0.90030 0.98417 1.19366 1.11264 0.95802 0.91115 1.20331 0.98833 0.90323 1.00256 1.24803 1.12431 1.03981 0.94798 1.83800 1.71985 0.98993 1.07656 1.23484 1.10762 0.92174 0.97670 1.41441 1.54212 1.08067 1.08749 0.74223 0.92923 0.93058 0.93323 0.93166 0.92667 0.92859 0.96336 0.93500 0.95468 0.88408 0.77698 0.82673 0.83886 0.81456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 37.16 0.34 -1.43 16 2 C -0.09 -1.41 2.48 -90.58 -0.22 -1.63 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -1.93 5.20 -26.61 -0.14 -2.06 16 5 C 0.14 2.74 6.52 -3.71 -0.02 2.71 16 6 N -0.59 -13.88 2.91 -172.27 -0.50 -14.38 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.06 1.62 7.89 -52.49 -0.41 1.21 16 9 C 0.01 0.28 4.92 -17.43 -0.09 0.19 16 10 N -0.90 -26.32 11.19 55.49 0.62 -25.69 16 11 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.16 3.74 4.91 -3.67 -0.02 3.72 16 16 C 0.13 2.31 2.24 -67.81 -0.15 2.16 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.69 -11.99 4.25 -55.05 -0.23 -12.23 16 19 C 0.58 11.12 7.75 -12.94 -0.10 11.02 16 20 O -0.53 -11.80 16.51 5.17 0.09 -11.72 16 21 C 0.01 0.17 6.97 -82.47 -0.57 -0.41 16 22 C -0.08 -1.27 10.58 -38.82 -0.41 -1.69 16 23 C -0.16 -2.37 6.80 -105.46 -0.72 -3.09 16 24 C -0.07 -0.77 10.42 -38.54 -0.40 -1.17 16 25 C -0.23 -2.26 11.03 28.84 0.32 -1.94 16 26 S 0.12 1.33 23.24 -107.50 -2.50 -1.17 16 27 C -0.01 -0.17 8.41 -15.05 -0.13 -0.30 16 28 N -0.52 -7.34 6.08 -7.94 -0.05 -7.39 16 29 H 0.42 4.87 8.14 -40.82 -0.33 4.54 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.58 7.54 -51.93 -0.39 0.19 16 33 H 0.05 0.73 6.40 -51.93 -0.33 0.40 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 40 H 0.39 5.91 5.71 -40.82 -0.23 5.67 16 41 H 0.16 2.38 8.06 -52.48 -0.42 1.95 16 42 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -32.18 360.53 -10.40 -42.58 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.76 Total: 8.21 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.46 Total: -0.92 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.16 Total: -59.69 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.50 Total: -1.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.18 -10.40 -42.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.992 kcal (2) G-P(sol) polarization free energy of solvation -32.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds