Wall clock time and date at job start Tue Mar 31 2020 18:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.45087 * 2 1 4 4 C 1.53040 * 109.46081 * 240.03024 * 2 1 3 5 5 C 1.53193 * 109.31454 * 178.61394 * 4 2 1 6 6 N 1.46921 * 108.77263 * 54.63557 * 5 4 2 7 7 C 1.36942 * 120.62994 * 126.41419 * 6 5 4 8 8 H 1.08002 * 119.99589 * 331.83064 * 7 6 5 9 9 C 1.38810 * 120.00448 * 151.83443 * 7 6 5 10 10 N 1.31624 * 119.99631 * 343.06711 * 9 7 6 11 11 Si 1.86800 * 120.00434 * 163.06799 * 9 7 6 12 12 H 1.48497 * 109.46916 * 90.00052 * 11 9 7 13 13 H 1.48502 * 109.47182 * 210.00025 * 11 9 7 14 14 H 1.48500 * 109.46770 * 329.99955 * 11 9 7 15 15 C 1.46996 * 118.76091 * 306.39284 * 6 5 4 16 16 C 1.53044 * 109.45967 * 119.96404 * 2 1 3 17 17 H 1.09000 * 109.49741 * 301.37278 * 16 2 1 18 18 N 1.46504 * 109.49731 * 61.43242 * 16 2 1 19 19 C 1.34773 * 119.99992 * 204.93357 * 18 16 2 20 20 O 1.21721 * 119.99942 * 0.02562 * 19 18 16 21 21 C 1.46495 * 119.99870 * 180.02562 * 19 18 16 22 22 C 1.36106 * 125.71328 * 180.02562 * 21 19 18 23 23 C 1.42223 * 107.63138 * 180.02562 * 22 21 19 24 24 C 1.45593 * 140.78519 * 180.35547 * 23 22 21 25 25 C 1.31811 * 114.63754 * 180.09438 * 24 23 22 26 26 S 1.75357 * 111.24154 * 359.54653 * 25 24 23 27 27 C 1.38176 * 106.99353 * 359.97438 * 23 22 21 28 28 N 1.37465 * 108.16652 * 0.02562 * 27 23 22 29 29 H 0.96997 * 125.68352 * 180.02562 * 28 27 23 30 30 H 1.08997 * 109.47009 * 300.03644 * 1 2 3 31 31 H 1.08997 * 109.47215 * 60.03429 * 1 2 3 32 32 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.49876 * 298.57148 * 4 2 1 34 34 H 1.09007 * 109.49202 * 58.66373 * 4 2 1 35 35 H 1.08993 * 109.58588 * 174.42486 * 5 4 2 36 36 H 1.08999 * 109.58360 * 294.70884 * 5 4 2 37 37 H 0.96994 * 120.00102 * 179.97438 * 10 9 7 38 38 H 1.09000 * 109.58249 * 293.83311 * 15 6 5 39 39 H 1.08998 * 109.63208 * 173.38048 * 15 6 5 40 40 H 0.97004 * 119.99584 * 24.93379 * 18 16 2 41 41 H 1.08007 * 126.18572 * 0.03730 * 22 21 19 42 42 H 1.08003 * 122.68110 * 359.91118 * 24 23 22 43 43 H 1.07994 * 124.37798 * 179.80441 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2642 6 7 4.0678 -1.2488 0.0000 7 6 4.9764 -2.2734 0.0001 8 1 5.0044 -2.9703 -0.8245 9 6 5.8613 -2.4164 1.0600 10 7 6.0658 -1.4127 1.8865 11 14 6.7620 -4.0332 1.3133 12 1 8.0465 -4.0062 0.5686 13 1 7.0327 -4.2276 2.7604 14 1 5.9227 -5.1511 0.8121 15 6 3.5714 -0.6886 1.2651 16 6 2.0399 -0.7207 1.2501 17 1 1.6567 -0.2210 2.1399 18 7 1.5801 -2.1117 1.2344 19 6 1.4528 -2.7925 2.3905 20 8 1.7194 -2.2515 3.4479 21 6 0.9936 -4.1835 2.3747 22 6 0.8236 -4.9765 3.4677 23 6 0.3688 -6.2450 3.0130 24 6 -0.0245 -7.5512 3.5220 25 6 -0.3804 -8.4178 2.5948 26 16 -0.2811 -7.7112 0.9930 27 6 0.2780 -6.1717 1.6362 28 7 0.6609 -4.9099 1.2480 29 1 0.6917 -4.5837 0.3350 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.6978 -1.7556 -1.2383 34 1 1.6572 -0.2207 -2.1398 35 1 3.9417 -1.2846 -2.0983 36 1 3.9142 0.3406 -1.3699 37 1 6.6838 -1.5126 2.6273 38 1 3.9142 0.3409 1.3682 39 1 3.9412 -1.2844 2.0996 40 1 1.3673 -2.5426 0.3918 41 1 1.0016 -4.6936 4.4947 42 1 -0.0218 -7.7918 4.5749 43 1 -0.6967 -9.4306 2.7960 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967626157.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:27 Heat of formation + Delta-G solvation = 34.085441 kcal Electronic energy + Delta-G solvation = -27084.969673 eV Core-core repulsion = 23450.058344 eV Total energy + Delta-G solvation = -3634.911329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.38568 -40.83057 -39.01645 -36.32015 -35.96752 -34.40935 -32.87188 -31.54986 -31.16824 -29.40040 -28.81318 -25.94569 -24.75476 -23.94363 -23.29016 -22.76192 -21.26626 -20.65796 -20.45685 -20.04968 -18.66263 -17.89946 -16.96618 -16.76439 -16.30648 -16.00922 -15.72711 -15.57810 -15.46160 -15.33504 -15.01301 -14.85528 -14.55098 -14.48608 -14.15519 -13.78762 -13.57564 -13.17704 -13.04935 -12.80642 -12.77407 -12.66445 -12.59610 -12.52078 -12.29651 -11.99569 -11.76830 -11.60624 -11.40898 -11.17709 -11.10571 -10.57547 -10.55892 -10.09030 -9.27913 -8.68753 -8.62119 -7.89879 -5.34414 0.07714 0.23984 0.43296 1.06961 1.35653 1.40228 1.46010 1.84143 2.02446 2.18073 2.40295 2.45014 3.26583 3.63005 3.66729 3.82715 3.85741 3.95166 4.02175 4.08824 4.44069 4.47907 4.62919 4.63646 4.67737 4.75428 4.77496 4.86031 4.92577 5.04680 5.13641 5.14542 5.18462 5.21231 5.24495 5.42572 5.43007 5.45709 5.55640 5.63075 5.66390 5.69814 6.13272 6.36185 6.53050 7.11598 7.15104 7.84883 8.35264 9.15014 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.004623 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.254396 B = 6055.450186 C = 7354.257369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.250 4.250 8 H 0.068 0.932 9 C -0.047 4.047 10 N -0.931 5.931 11 Si 0.949 3.051 12 H -0.280 1.280 13 H -0.302 1.302 14 H -0.273 1.273 15 C 0.170 3.830 16 C 0.137 3.863 17 H 0.069 0.931 18 N -0.683 5.683 19 C 0.581 3.419 20 O -0.573 6.573 21 C -0.013 4.013 22 C -0.092 4.092 23 C -0.182 4.182 24 C -0.088 4.088 25 C -0.210 4.210 26 S 0.161 5.839 27 C -0.024 4.024 28 N -0.514 5.514 29 H 0.430 0.570 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.014 0.986 37 H 0.245 0.755 38 H 0.001 0.999 39 H 0.048 0.952 40 H 0.401 0.599 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.322 -9.672 -5.201 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.381 4.381 8 H 0.086 0.914 9 C -0.242 4.242 10 N -0.577 5.577 11 Si 0.778 3.222 12 H -0.206 1.206 13 H -0.229 1.229 14 H -0.198 1.198 15 C 0.043 3.957 16 C 0.031 3.969 17 H 0.087 0.913 18 N -0.332 5.332 19 C 0.369 3.631 20 O -0.453 6.453 21 C -0.127 4.127 22 C -0.120 4.120 23 C -0.194 4.194 24 C -0.118 4.118 25 C -0.343 4.343 26 S 0.414 5.586 27 C -0.253 4.253 28 N -0.119 5.119 29 H 0.270 0.730 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.067 0.933 40 H 0.238 0.762 41 H 0.168 0.832 42 H 0.181 0.819 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -18.282 -9.676 -5.911 21.512 hybrid contribution 1.617 0.187 1.340 2.108 sum -16.665 -9.488 -4.570 19.714 Atomic orbital electron populations 1.21765 0.93036 1.02004 1.02462 1.21287 0.96846 0.99336 0.93166 0.90157 1.21967 0.95626 1.00261 0.97613 1.21150 0.93676 0.96027 0.88132 1.44183 1.48087 1.39438 1.00635 1.19370 1.09219 1.03482 1.06016 0.91395 1.25660 0.98697 0.99530 1.00355 1.70148 1.38347 1.30675 1.18543 0.85548 0.79069 0.81247 0.76307 1.20606 1.22905 1.19791 1.20899 0.89905 0.95245 0.89653 1.21573 0.95369 0.80920 0.99078 0.91310 1.45570 1.65942 1.13993 1.07712 1.17203 0.77292 0.84219 0.84422 1.90814 1.52933 1.69437 1.32126 1.19909 1.12629 0.93054 0.87078 1.20871 1.01588 0.91247 0.98300 1.19718 1.11534 0.96363 0.91810 1.20533 1.00121 0.89255 1.01865 1.25320 1.09997 1.05113 0.93894 1.83765 1.70766 0.96307 1.07723 1.24051 1.10100 0.92926 0.98250 1.41283 1.53981 1.08077 1.08519 0.73032 0.93038 0.90373 0.92784 0.92198 0.88865 0.92488 0.96756 0.94535 0.98127 0.93343 0.76226 0.83222 0.81908 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.05 71.98 0.65 -2.22 16 2 C -0.09 -2.44 2.48 -10.77 -0.03 -2.47 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -3.11 5.20 30.67 0.16 -2.95 16 5 C 0.14 5.03 6.52 86.36 0.56 5.60 16 6 N -0.60 -28.73 2.91 -698.94 -2.04 -30.77 16 7 C -0.25 -13.53 9.58 84.03 0.81 -12.72 16 8 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 9 C -0.05 -2.68 4.92 84.86 0.42 -2.27 16 10 N -0.93 -57.56 11.19 21.65 0.24 -57.32 16 11 Si 0.95 47.03 29.59 68.60 2.03 49.06 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.30 -15.53 7.11 99.48 0.71 -14.83 16 14 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 15 C 0.17 8.34 4.91 86.35 0.42 8.76 16 16 C 0.14 5.10 2.24 45.07 0.10 5.20 16 17 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 18 N -0.68 -23.72 4.25 -446.28 -1.90 -25.62 16 19 C 0.58 22.98 7.75 86.40 0.67 23.65 16 20 O -0.57 -27.35 16.51 -4.42 -0.07 -27.42 16 21 C -0.01 -0.44 6.97 39.81 0.28 -0.17 16 22 C -0.09 -3.05 10.58 22.76 0.24 -2.81 16 23 C -0.18 -5.12 6.80 -20.41 -0.14 -5.26 16 24 C -0.09 -1.81 10.42 23.39 0.24 -1.57 16 25 C -0.21 -3.38 11.03 67.05 0.74 -2.64 16 26 S 0.16 2.96 23.24 -56.49 -1.31 1.65 16 27 C -0.02 -0.64 8.41 83.80 0.70 0.07 16 28 N -0.51 -14.01 6.08 -179.04 -1.09 -15.10 16 29 H 0.43 9.31 8.14 -92.71 -0.75 8.56 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.10 7.54 -2.39 -0.02 1.08 16 33 H 0.06 1.52 6.40 -2.39 -0.02 1.51 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 36 H 0.01 0.55 8.14 -2.39 -0.02 0.54 16 37 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 39 H 0.05 2.87 6.06 -2.39 -0.01 2.86 16 40 H 0.40 11.71 5.71 -92.71 -0.53 11.18 16 41 H 0.15 4.91 8.06 -2.91 -0.02 4.89 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 43 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.56 360.53 1.47 -73.09 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -0.23 Total: 24.20 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.83 Total: 8.23 kcal Atomic # 7 Polarization: -124.02 SS G_CDS: -4.78 Total: -128.80 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.07 Total: -27.42 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Total: -74.56 1.47 -73.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626157.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.179 kcal (2) G-P(sol) polarization free energy of solvation -74.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds