Wall clock time and date at job start Tue Mar 31 2020 18:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45296 * 2 1 4 4 C 1.53044 * 109.45747 * 240.02959 * 2 1 3 5 5 C 1.53193 * 109.30892 * 178.61410 * 4 2 1 6 6 N 1.46928 * 108.77846 * 54.64056 * 5 4 2 7 7 C 1.36932 * 120.63196 * 126.40781 * 6 5 4 8 8 H 1.08000 * 120.00261 * 331.80890 * 7 6 5 9 9 C 1.38818 * 119.99817 * 151.80869 * 7 6 5 10 10 N 1.31617 * 119.99915 * 343.09087 * 9 7 6 11 11 Si 1.86799 * 119.99830 * 163.08503 * 9 7 6 12 12 H 1.48503 * 109.46946 * 60.00410 * 11 9 7 13 13 H 1.48498 * 109.46944 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47329 * 299.99924 * 11 9 7 15 15 C 1.46927 * 118.73470 * 306.39104 * 6 5 4 16 16 C 1.53041 * 109.45932 * 119.96627 * 2 1 3 17 17 H 1.09003 * 109.52721 * 61.41617 * 16 2 1 18 18 N 1.46496 * 109.49731 * 301.33298 * 16 2 1 19 19 C 1.34777 * 119.99957 * 155.16335 * 18 16 2 20 20 O 1.21727 * 120.00258 * 359.97438 * 19 18 16 21 21 C 1.46496 * 119.99957 * 179.97438 * 19 18 16 22 22 C 1.36116 * 125.71136 * 180.24105 * 21 19 18 23 23 C 1.42226 * 107.62693 * 180.17127 * 22 21 19 24 24 C 1.45596 * 140.78409 * 179.97438 * 23 22 21 25 25 C 1.31800 * 114.63709 * 179.67496 * 24 23 22 26 26 S 1.75354 * 111.24408 * 359.97438 * 25 24 23 27 27 C 1.38173 * 106.99323 * 359.64941 * 23 22 21 28 28 N 1.37458 * 108.17131 * 0.21245 * 27 23 22 29 29 H 0.96997 * 125.68681 * 180.02562 * 28 27 23 30 30 H 1.09002 * 109.46813 * 300.03502 * 1 2 3 31 31 H 1.08997 * 109.47088 * 60.03246 * 1 2 3 32 32 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49597 * 58.67078 * 4 2 1 34 34 H 1.08989 * 109.52820 * 298.58093 * 4 2 1 35 35 H 1.09000 * 109.59169 * 294.84659 * 5 4 2 36 36 H 1.09007 * 109.70137 * 174.49428 * 5 4 2 37 37 H 0.96999 * 119.99982 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58842 * 293.81616 * 15 6 5 39 39 H 1.08998 * 109.58542 * 173.39428 * 15 6 5 40 40 H 0.96997 * 120.00323 * 335.16160 * 18 16 2 41 41 H 1.08003 * 126.18744 * 359.86092 * 22 21 19 42 42 H 1.08005 * 122.68042 * 359.64294 * 24 23 22 43 43 H 1.08004 * 124.38016 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9764 -2.2735 0.0000 8 1 5.0041 -2.9706 -0.8244 9 6 5.8617 -2.4161 1.0597 10 7 6.0661 -1.4123 1.8860 11 14 6.7627 -4.0327 1.3128 12 1 7.5864 -4.3332 0.1143 13 1 7.6431 -3.9274 2.5040 14 1 5.7756 -5.1223 1.5210 15 6 3.5714 -0.6886 1.2643 16 6 2.0399 -0.7208 1.2501 17 1 1.6978 -1.7557 1.2390 18 7 1.5257 -0.0487 2.4459 19 6 1.4003 -0.7313 3.6012 20 8 1.7138 -1.9065 3.6510 21 6 0.8866 -0.0591 4.7972 22 6 0.7173 -0.6325 6.0200 23 6 0.1958 0.3616 6.8934 24 6 -0.2310 0.5386 8.2740 25 6 -0.6502 1.7530 8.5682 26 16 -0.5628 2.8108 7.1723 27 6 0.0737 1.5235 6.1556 28 7 0.4968 1.2638 4.8738 29 1 0.5184 1.9031 4.1446 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9143 0.3408 -1.3674 36 1 3.9437 -1.2832 -2.0986 37 1 6.6845 -1.5121 2.6267 38 1 3.9143 0.3409 1.3674 39 1 3.9417 -1.2846 2.0984 40 1 1.2754 0.8876 2.4063 41 1 0.9346 -1.6583 6.2789 42 1 -0.2067 -0.2616 8.9991 43 1 -1.0020 2.0574 9.5429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967626160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:33 Heat of formation + Delta-G solvation = 53.226322 kcal Electronic energy + Delta-G solvation = -26342.504496 eV Core-core repulsion = 22708.423178 eV Total energy + Delta-G solvation = -3634.081318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -41.35430 -39.33681 -37.54317 -35.46620 -34.41744 -33.18737 -31.00986 -30.53015 -29.54282 -28.12210 -27.29792 -24.18622 -23.59128 -23.00744 -21.60519 -21.01965 -20.13395 -19.82338 -19.26412 -18.91711 -16.83389 -16.69763 -15.68167 -15.26324 -15.13080 -14.82351 -14.67923 -14.14785 -14.00952 -13.77696 -13.61721 -13.50075 -13.34175 -13.08198 -12.82488 -12.44531 -12.05495 -11.98291 -11.79975 -11.69605 -11.63083 -11.00358 -10.90923 -10.71862 -10.68232 -10.49805 -10.20827 -10.09101 -9.93680 -9.65832 -9.58736 -9.51754 -8.67598 -8.42966 -8.39893 -7.79013 -6.66911 -5.76030 -3.19933 0.91358 1.19099 1.39198 1.81055 2.82975 2.99708 3.32242 3.44223 3.50048 3.52165 3.59710 4.52733 4.56844 4.80329 4.93984 5.10794 5.19215 5.29570 5.34517 5.46030 5.51256 5.57033 5.63275 5.84144 5.92806 5.95928 5.97238 6.04524 6.10211 6.18619 6.31322 6.35548 6.41804 6.45581 6.61720 6.66961 6.71347 6.83503 6.93228 7.02528 7.25333 7.69265 7.75735 7.84109 8.43252 8.48778 9.22192 9.86043 10.40750 11.32074 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003250 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.628470 B = 8613.403371 C = 9993.766754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.903 3.097 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.167 3.833 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.715 5.715 19 C 0.582 3.418 20 O -0.512 6.512 21 C 0.004 3.996 22 C -0.074 4.074 23 C -0.162 4.162 24 C -0.067 4.067 25 C -0.225 4.225 26 S 0.124 5.876 27 C -0.013 4.013 28 N -0.525 5.525 29 H 0.419 0.581 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.255 0.745 38 H 0.016 0.984 39 H 0.096 0.904 40 H 0.385 0.615 41 H 0.157 0.843 42 H 0.145 0.855 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 10.094 7.829 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.733 3.267 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.104 0.896 18 N -0.365 5.365 19 C 0.367 3.633 20 O -0.386 6.386 21 C -0.109 4.109 22 C -0.102 4.102 23 C -0.175 4.175 24 C -0.098 4.098 25 C -0.359 4.359 26 S 0.378 5.622 27 C -0.241 4.241 28 N -0.128 5.128 29 H 0.257 0.743 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.114 0.886 40 H 0.218 0.782 41 H 0.175 0.825 42 H 0.162 0.838 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.116 10.733 7.599 20.800 hybrid contribution 0.727 -1.291 0.134 1.488 sum -15.388 9.442 7.733 19.641 Atomic orbital electron populations 1.21854 0.95999 1.01699 1.00599 1.21312 0.94536 0.99649 0.95642 0.91552 1.22067 0.98995 1.00091 0.95325 1.20968 0.90753 0.96492 0.90249 1.43935 1.48096 1.39859 0.99078 1.19096 1.09621 1.03174 1.06955 0.91627 1.25045 0.97070 0.97404 0.99617 1.69994 1.37241 1.29094 1.17940 0.86365 0.79227 0.83899 0.77252 1.20920 1.21591 1.20793 1.21098 0.86251 0.97500 0.91210 1.22087 0.98533 0.96455 0.80978 0.89608 1.45975 1.66157 1.13572 1.10819 1.16906 0.78470 0.86414 0.81506 1.90924 1.49164 1.14917 1.83631 1.20317 1.10207 0.83250 0.97105 1.20757 1.00658 0.99295 0.89501 1.19383 1.10591 0.93688 0.93822 1.20349 0.98481 0.97197 0.93723 1.24823 1.11877 0.97038 1.02160 1.83832 1.69373 1.09167 0.99875 1.23510 1.10170 1.00732 0.89707 1.41427 1.52958 1.10168 1.08257 0.74276 0.93530 0.93035 0.92761 0.92564 0.91998 0.96472 0.92523 0.93550 0.96558 0.88606 0.78200 0.82525 0.83781 0.81371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 37.16 0.34 -1.47 16 2 C -0.09 -1.42 2.27 -90.57 -0.21 -1.63 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.13 -2.05 5.36 -26.61 -0.14 -2.20 16 5 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 6 N -0.59 -14.73 2.99 -172.31 -0.52 -15.25 16 7 C -0.26 -7.24 9.58 -15.06 -0.14 -7.38 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 C 0.01 0.23 4.92 -17.43 -0.09 0.14 16 10 N -0.90 -26.80 11.20 55.49 0.62 -26.18 16 11 Si 0.90 22.54 29.59 -169.99 -5.03 17.51 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 15 C 0.17 4.00 4.88 -3.71 -0.02 3.98 16 16 C 0.12 2.35 2.06 -67.81 -0.14 2.21 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 18 N -0.72 -11.29 4.37 -55.05 -0.24 -11.53 16 19 C 0.58 10.30 7.75 -12.93 -0.10 10.20 16 20 O -0.51 -11.37 16.51 5.16 0.09 -11.28 16 21 C 0.00 0.07 6.97 -82.47 -0.57 -0.51 16 22 C -0.07 -1.09 10.58 -38.81 -0.41 -1.50 16 23 C -0.16 -2.10 6.80 -105.46 -0.72 -2.81 16 24 C -0.07 -0.68 10.42 -38.54 -0.40 -1.08 16 25 C -0.23 -1.93 11.03 28.84 0.32 -1.62 16 26 S 0.12 1.14 23.24 -107.50 -2.50 -1.36 16 27 C -0.01 -0.15 8.41 -15.05 -0.13 -0.28 16 28 N -0.52 -6.15 6.08 -7.94 -0.05 -6.20 16 29 H 0.42 3.66 8.14 -40.82 -0.33 3.33 16 30 H 0.05 0.52 7.36 -51.93 -0.38 0.14 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.07 8.14 -51.94 -0.42 0.65 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 2.73 6.06 -51.93 -0.31 2.42 16 40 H 0.39 4.69 7.37 -40.82 -0.30 4.39 16 41 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 42 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -33.52 363.67 -10.50 -44.02 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.91 Total: 5.88 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -2.44 Total: -1.07 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.18 Total: -59.16 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.50 Total: -1.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.52 -10.50 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.244 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds