Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45296 * 2 1 4 4 C 1.53044 * 109.45747 * 240.02959 * 2 1 3 5 5 C 1.53193 * 109.30892 * 178.61410 * 4 2 1 6 6 N 1.46928 * 108.77846 * 54.64056 * 5 4 2 7 7 C 1.36932 * 120.63196 * 126.40781 * 6 5 4 8 8 H 1.08000 * 120.00261 * 331.80890 * 7 6 5 9 9 C 1.38818 * 119.99817 * 151.80869 * 7 6 5 10 10 N 1.31617 * 119.99915 * 343.09087 * 9 7 6 11 11 Si 1.86799 * 119.99830 * 163.08503 * 9 7 6 12 12 H 1.48503 * 109.46946 * 60.00410 * 11 9 7 13 13 H 1.48498 * 109.46944 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47329 * 299.99924 * 11 9 7 15 15 C 1.46927 * 118.73470 * 306.39104 * 6 5 4 16 16 C 1.53041 * 109.45932 * 119.96627 * 2 1 3 17 17 H 1.09003 * 109.52721 * 61.41617 * 16 2 1 18 18 N 1.46496 * 109.49731 * 301.33298 * 16 2 1 19 19 C 1.34777 * 119.99957 * 155.16335 * 18 16 2 20 20 O 1.21727 * 120.00258 * 359.97438 * 19 18 16 21 21 C 1.46496 * 119.99957 * 179.97438 * 19 18 16 22 22 C 1.36116 * 125.71136 * 180.24105 * 21 19 18 23 23 C 1.42226 * 107.62693 * 180.17127 * 22 21 19 24 24 C 1.45596 * 140.78409 * 179.97438 * 23 22 21 25 25 C 1.31800 * 114.63709 * 179.67496 * 24 23 22 26 26 S 1.75354 * 111.24408 * 359.97438 * 25 24 23 27 27 C 1.38173 * 106.99323 * 359.64941 * 23 22 21 28 28 N 1.37458 * 108.17131 * 0.21245 * 27 23 22 29 29 H 0.96997 * 125.68681 * 180.02562 * 28 27 23 30 30 H 1.09002 * 109.46813 * 300.03502 * 1 2 3 31 31 H 1.08997 * 109.47088 * 60.03246 * 1 2 3 32 32 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49597 * 58.67078 * 4 2 1 34 34 H 1.08989 * 109.52820 * 298.58093 * 4 2 1 35 35 H 1.09000 * 109.59169 * 294.84659 * 5 4 2 36 36 H 1.09007 * 109.70137 * 174.49428 * 5 4 2 37 37 H 0.96999 * 119.99982 * 179.97438 * 10 9 7 38 38 H 1.09004 * 109.58842 * 293.81616 * 15 6 5 39 39 H 1.08998 * 109.58542 * 173.39428 * 15 6 5 40 40 H 0.96997 * 120.00323 * 335.16160 * 18 16 2 41 41 H 1.08003 * 126.18744 * 359.86092 * 22 21 19 42 42 H 1.08005 * 122.68042 * 359.64294 * 24 23 22 43 43 H 1.08004 * 124.38016 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6887 -1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9764 -2.2735 0.0000 8 1 5.0041 -2.9706 -0.8244 9 6 5.8617 -2.4161 1.0597 10 7 6.0661 -1.4123 1.8860 11 14 6.7627 -4.0327 1.3128 12 1 7.5864 -4.3332 0.1143 13 1 7.6431 -3.9274 2.5040 14 1 5.7756 -5.1223 1.5210 15 6 3.5714 -0.6886 1.2643 16 6 2.0399 -0.7208 1.2501 17 1 1.6978 -1.7557 1.2390 18 7 1.5257 -0.0487 2.4459 19 6 1.4003 -0.7313 3.6012 20 8 1.7138 -1.9065 3.6510 21 6 0.8866 -0.0591 4.7972 22 6 0.7173 -0.6325 6.0200 23 6 0.1958 0.3616 6.8934 24 6 -0.2310 0.5386 8.2740 25 6 -0.6502 1.7530 8.5682 26 16 -0.5628 2.8108 7.1723 27 6 0.0737 1.5235 6.1556 28 7 0.4968 1.2638 4.8738 29 1 0.5184 1.9031 4.1446 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6573 -0.2208 -2.1398 34 1 1.6978 -1.7557 -1.2389 35 1 3.9143 0.3408 -1.3674 36 1 3.9437 -1.2832 -2.0986 37 1 6.6845 -1.5121 2.6267 38 1 3.9143 0.3409 1.3674 39 1 3.9417 -1.2846 2.0984 40 1 1.2754 0.8876 2.4063 41 1 0.9346 -1.6583 6.2789 42 1 -0.2067 -0.2616 8.9991 43 1 -1.0020 2.0574 9.5429 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967626160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = 31.083017 kcal Electronic energy + Delta-G solvation = -26343.464702 eV Core-core repulsion = 22708.423178 eV Total energy + Delta-G solvation = -3635.041524 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.41401 -40.76481 -39.09908 -36.36720 -36.12376 -34.75766 -32.86404 -31.57689 -31.01494 -29.34923 -28.85375 -25.97405 -24.93276 -23.94155 -23.00012 -22.59630 -21.45130 -21.12270 -20.24181 -20.14306 -18.78911 -17.81516 -17.27387 -16.81472 -16.37933 -15.98212 -15.68799 -15.54083 -15.45311 -15.32028 -15.17063 -14.89855 -14.60229 -14.45626 -14.11929 -13.79677 -13.55275 -13.31130 -13.09204 -12.81001 -12.72706 -12.63887 -12.59959 -12.38069 -12.22389 -11.94297 -11.77282 -11.67726 -11.60695 -11.25548 -11.13542 -10.59044 -10.56140 -10.22692 -9.29606 -8.72258 -8.63839 -7.91600 -5.37620 0.06714 0.18850 0.42193 1.06227 1.39737 1.45955 1.50441 1.81090 1.92941 2.11827 2.32381 2.47900 3.24986 3.55062 3.74538 3.78916 3.83235 3.95787 4.00337 4.11565 4.41109 4.44656 4.55031 4.62315 4.62686 4.69603 4.75722 4.88794 4.94477 5.06951 5.10617 5.14825 5.15738 5.18438 5.25183 5.35909 5.41167 5.42011 5.50497 5.59385 5.62724 5.73564 6.12974 6.33621 6.46659 7.06197 7.11913 7.82510 8.31564 9.13106 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003250 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.628470 B = 8613.403371 C = 9993.766754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.266 4.266 8 H 0.069 0.931 9 C -0.049 4.049 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.267 1.267 13 H -0.294 1.294 14 H -0.284 1.284 15 C 0.178 3.822 16 C 0.141 3.859 17 H 0.054 0.946 18 N -0.700 5.700 19 C 0.582 3.418 20 O -0.568 6.568 21 C -0.014 4.014 22 C -0.088 4.088 23 C -0.182 4.182 24 C -0.089 4.089 25 C -0.210 4.210 26 S 0.168 5.832 27 C -0.020 4.020 28 N -0.513 5.513 29 H 0.433 0.567 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.000 1.000 39 H 0.043 0.957 40 H 0.407 0.593 41 H 0.148 0.852 42 H 0.162 0.838 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.651 12.418 7.888 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.397 4.397 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.220 1.220 14 H -0.211 1.211 15 C 0.051 3.949 16 C 0.035 3.965 17 H 0.072 0.928 18 N -0.351 5.351 19 C 0.369 3.631 20 O -0.447 6.447 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.195 4.195 24 C -0.119 4.119 25 C -0.344 4.344 26 S 0.421 5.579 27 C -0.249 4.249 28 N -0.118 5.118 29 H 0.273 0.727 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.070 0.930 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.243 0.757 41 H 0.166 0.834 42 H 0.179 0.821 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -18.621 13.122 7.607 24.017 hybrid contribution 1.449 -1.911 0.185 2.405 sum -17.172 11.211 7.792 21.938 Atomic orbital electron populations 1.21779 0.92942 1.01781 1.02775 1.21281 0.96920 0.99429 0.92755 0.90093 1.21967 0.95651 1.00317 0.97540 1.21190 0.93594 0.96213 0.87976 1.44214 1.48150 1.39861 1.00973 1.19461 1.09487 1.03950 1.06767 0.91383 1.25794 0.98563 1.00249 0.99864 1.70152 1.38216 1.30807 1.18414 0.85429 0.78070 0.80193 0.77372 1.19188 1.22029 1.21086 1.20785 0.89608 0.95051 0.89435 1.21592 0.94937 0.96056 0.83936 0.92766 1.45710 1.65248 1.14461 1.09633 1.17290 0.77460 0.85871 0.82443 1.90886 1.51734 1.17482 1.84610 1.19751 1.12255 0.84820 0.95890 1.20892 1.00902 0.99610 0.90267 1.19695 1.10985 0.93418 0.95402 1.20534 0.99817 0.98702 0.92844 1.25325 1.09593 0.96123 1.03352 1.83798 1.67994 1.07386 0.98755 1.24042 1.09365 1.02029 0.89512 1.41235 1.52432 1.09143 1.08944 0.72655 0.92084 0.90161 0.93766 0.88406 0.93047 0.96031 0.92559 0.94403 0.98246 0.93835 0.75694 0.83443 0.82094 0.77892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.02 71.98 0.65 -2.29 16 2 C -0.08 -2.45 2.27 -10.76 -0.02 -2.47 16 3 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 4 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 5 C 0.14 5.44 6.52 86.36 0.56 6.00 16 6 N -0.61 -31.48 2.99 -699.07 -2.09 -33.57 16 7 C -0.27 -15.38 9.58 84.04 0.81 -14.58 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 9 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 10 N -0.93 -58.33 11.20 21.65 0.24 -58.09 16 11 Si 0.96 48.05 29.59 68.60 2.03 50.08 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.29 -14.76 7.11 99.48 0.71 -14.05 16 14 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 15 C 0.18 8.99 4.88 86.36 0.42 9.41 16 16 C 0.14 5.44 2.06 45.07 0.09 5.53 16 17 H 0.05 2.47 7.58 -2.39 -0.02 2.45 16 18 N -0.70 -22.51 4.37 -446.29 -1.95 -24.46 16 19 C 0.58 21.73 7.75 86.39 0.67 22.40 16 20 O -0.57 -27.30 16.51 -4.44 -0.07 -27.37 16 21 C -0.01 -0.42 6.97 39.81 0.28 -0.14 16 22 C -0.09 -2.70 10.58 22.77 0.24 -2.45 16 23 C -0.18 -4.61 6.80 -20.41 -0.14 -4.75 16 24 C -0.09 -1.63 10.42 23.40 0.24 -1.39 16 25 C -0.21 -2.88 11.03 67.05 0.74 -2.14 16 26 S 0.17 2.54 23.24 -56.49 -1.31 1.22 16 27 C -0.02 -0.46 8.41 83.80 0.70 0.25 16 28 N -0.51 -11.59 6.08 -179.04 -1.09 -12.68 16 29 H 0.43 6.85 8.14 -92.71 -0.75 6.09 16 30 H 0.06 1.16 7.36 -2.39 -0.02 1.14 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 2.23 7.93 -2.38 -0.02 2.21 16 37 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 38 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.04 2.65 6.06 -2.39 -0.01 2.64 16 40 H 0.41 9.49 7.37 -92.71 -0.68 8.81 16 41 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 42 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -78.99 363.67 1.20 -77.80 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.39 Total: 19.56 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.83 Total: 7.51 kcal Atomic # 7 Polarization: -123.91 SS G_CDS: -4.89 Total: -128.80 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.07 Total: -27.37 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.31 Total: 1.22 kcal Total: -78.99 1.20 -77.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967626160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.880 kcal (2) G-P(sol) polarization free energy of solvation -78.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds