Wall clock time and date at job start Tue Mar 31 2020 18:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46242 * 2 1 4 4 C 1.53043 * 109.45621 * 119.95933 * 2 1 3 5 5 C 1.53185 * 109.31050 * 181.38569 * 4 2 1 6 6 N 1.46925 * 108.77676 * 305.35914 * 5 4 2 7 7 C 1.36933 * 120.63232 * 233.58640 * 6 5 4 8 8 H 1.07995 * 120.00401 * 27.68812 * 7 6 5 9 9 C 1.38814 * 119.99974 * 207.68588 * 7 6 5 10 10 N 1.31618 * 120.00196 * 17.37377 * 9 7 6 11 11 Si 1.86801 * 120.00160 * 197.36694 * 9 7 6 12 12 H 1.48498 * 109.46839 * 60.00063 * 11 9 7 13 13 H 1.48493 * 109.47357 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47296 * 300.00284 * 11 9 7 15 15 C 1.46926 * 118.73411 * 53.61697 * 6 5 4 16 16 C 1.53041 * 109.46098 * 240.02427 * 2 1 3 17 17 H 1.09002 * 109.49508 * 298.60049 * 16 2 1 18 18 N 1.46497 * 109.49590 * 58.66408 * 16 2 1 19 19 C 1.34781 * 119.99644 * 204.99914 * 18 16 2 20 20 O 1.21728 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.46453 * 119.99555 * 180.02562 * 19 18 16 22 22 C 1.37467 * 125.80569 * 180.02562 * 21 19 18 23 23 C 1.40650 * 107.55829 * 179.97438 * 22 21 19 24 24 S 1.76023 * 142.39858 * 180.02562 * 23 22 21 25 25 C 1.75588 * 91.31305 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47402 * 359.97438 * 25 24 23 27 27 C 1.38244 * 108.03346 * 359.97438 * 23 22 21 28 28 N 1.37922 * 125.81031 * 359.70946 * 21 19 18 29 29 H 0.97004 * 125.68173 * 359.97438 * 28 21 19 30 30 H 1.09001 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47494 * 299.97793 * 1 2 3 32 32 H 1.09006 * 109.46785 * 59.97644 * 1 2 3 33 33 H 1.09000 * 109.49266 * 301.33797 * 4 2 1 34 34 H 1.08997 * 109.50075 * 61.43294 * 4 2 1 35 35 H 1.09002 * 109.59089 * 65.15599 * 5 4 2 36 36 H 1.09010 * 109.58567 * 185.43168 * 5 4 2 37 37 H 0.96995 * 120.00762 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.58225 * 186.60662 * 15 6 5 39 39 H 1.08995 * 109.59380 * 66.17778 * 15 6 5 40 40 H 0.96998 * 120.00461 * 24.72894 * 18 16 2 41 41 H 1.08008 * 126.21838 * 0.02562 * 22 21 19 42 42 H 1.08004 * 124.76687 * 180.02562 * 25 24 23 43 43 H 1.08004 * 122.16803 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0678 -1.2490 0.0003 7 6 4.9763 -2.2735 0.0005 8 1 5.0096 -2.9656 0.8289 9 6 5.8546 -2.4226 -1.0640 10 7 6.0605 -1.4208 -1.8926 11 14 6.7445 -4.0448 -1.3207 12 1 5.7496 -5.1287 -1.5220 13 1 7.6186 -3.9461 -2.5171 14 1 7.5732 -4.3491 -0.1266 15 6 3.5715 -0.6888 -1.2640 16 6 2.0399 -0.7210 -1.2500 17 1 1.6974 -1.7557 -1.2383 18 7 1.5257 -0.0491 -2.4459 19 6 1.3972 -0.7329 -3.6002 20 8 1.7090 -1.9085 -3.6492 21 6 0.8837 -0.0610 -4.7959 22 6 0.7042 -0.6405 -6.0295 23 6 0.1947 0.3468 -6.8920 24 16 -0.3349 0.6122 -8.5496 25 6 -0.7027 2.2943 -8.2055 26 6 -0.4321 2.5788 -6.9372 27 6 0.0684 1.5202 -6.1721 28 7 0.4920 1.2591 -4.8744 29 1 0.5103 1.8990 -4.1456 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2204 2.1398 34 1 1.6978 -1.7555 1.2386 35 1 3.9143 0.3410 1.3675 36 1 3.9415 -1.2822 2.1003 37 1 6.6739 -1.5250 -2.6367 38 1 3.9417 -1.2850 -2.0980 39 1 3.9144 0.3406 -1.3673 40 1 1.2739 0.8868 -2.4060 41 1 0.9152 -1.6675 -6.2889 42 1 -1.0948 2.9985 -8.9244 43 1 -0.5893 3.5636 -6.5227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968505200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:38 Heat of formation + Delta-G solvation = 52.722750 kcal Electronic energy + Delta-G solvation = -26362.544541 eV Core-core repulsion = 22728.441386 eV Total energy + Delta-G solvation = -3634.103155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.38689 -39.38313 -37.57639 -35.38570 -34.43726 -33.21445 -31.08870 -30.93838 -29.43597 -27.99605 -27.27147 -24.19832 -23.71560 -22.90783 -21.59012 -21.06449 -20.46542 -19.95309 -19.29053 -18.49356 -16.83897 -16.49638 -15.68815 -15.55382 -15.24740 -14.80196 -14.40603 -14.10803 -14.01797 -13.78125 -13.66871 -13.55172 -13.35854 -13.09973 -12.90001 -12.44840 -12.05997 -11.99557 -11.74769 -11.69021 -11.62215 -10.98876 -10.91233 -10.71990 -10.68135 -10.49816 -10.20992 -10.09577 -9.93509 -9.83783 -9.66407 -9.52581 -8.68535 -8.42909 -8.17497 -7.78427 -6.67815 -5.76118 -3.19450 0.66617 1.40573 1.93618 1.95347 2.62040 2.74238 3.35274 3.44639 3.50369 3.52488 3.55737 4.54242 4.59934 4.83059 4.87930 5.10435 5.18413 5.18871 5.34015 5.38388 5.48355 5.56311 5.61891 5.80797 5.85954 5.86742 5.92383 5.96842 6.06119 6.17935 6.31852 6.36466 6.41118 6.44975 6.54667 6.66456 6.71017 6.83323 6.92942 7.15501 7.25949 7.69068 7.75189 7.83997 8.42259 8.48190 9.21991 9.86023 10.40389 11.31984 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.003262 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.394706 B = 8582.729385 C =10054.268448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.259 4.259 8 H 0.066 0.934 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.903 3.097 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.086 0.914 18 N -0.714 5.714 19 C 0.581 3.419 20 O -0.511 6.511 21 C 0.022 3.978 22 C -0.079 4.079 23 C -0.215 4.215 24 S 0.126 5.874 25 C -0.194 4.194 26 C -0.112 4.112 27 C 0.058 3.942 28 N -0.541 5.541 29 H 0.418 0.582 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.017 0.983 36 H 0.056 0.944 37 H 0.255 0.745 38 H 0.096 0.904 39 H 0.016 0.984 40 H 0.386 0.614 41 H 0.157 0.843 42 H 0.171 0.829 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.224 10.539 -7.503 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.388 4.388 8 H 0.084 0.916 9 C -0.191 4.191 10 N -0.543 5.543 11 Si 0.732 3.268 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.104 0.896 18 N -0.364 5.364 19 C 0.365 3.635 20 O -0.385 6.385 21 C -0.093 4.093 22 C -0.109 4.109 23 C -0.335 4.335 24 S 0.386 5.614 25 C -0.330 4.330 26 C -0.145 4.145 27 C -0.060 4.060 28 N -0.144 5.144 29 H 0.256 0.744 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.035 0.965 40 H 0.219 0.781 41 H 0.174 0.826 42 H 0.188 0.812 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.928 8.857 -8.777 20.228 hybrid contribution 0.477 1.092 1.396 1.835 sum -15.451 9.949 -7.382 19.804 Atomic orbital electron populations 1.21856 0.95995 1.01706 1.00602 1.21316 0.94535 0.99655 0.95641 0.91543 1.22072 0.99002 1.00100 0.95324 1.20961 0.90762 0.96487 0.90241 1.43937 1.48084 1.39863 0.99082 1.19098 1.09894 1.03332 1.06512 0.91597 1.25028 0.97102 0.97424 0.99593 1.69993 1.37450 1.29134 1.17692 0.86367 0.79183 0.83973 0.77252 1.20796 1.21589 1.20928 1.21101 0.86243 0.97516 0.91223 1.22093 0.98544 0.96467 0.80957 0.89598 1.45973 1.66033 1.13599 1.10840 1.16895 0.78595 0.86440 0.81522 1.90927 1.49071 1.14880 1.83616 1.20598 1.08517 0.83426 0.96730 1.20429 1.02341 0.98974 0.89150 1.22671 1.14129 0.98253 0.98477 1.83896 1.66674 1.05132 1.05716 1.25191 1.08478 0.99983 0.99361 1.18877 1.04268 0.98302 0.93078 1.18326 1.07043 0.95281 0.85389 1.41971 1.53314 1.10061 1.09030 0.74420 0.92760 0.93033 0.93524 0.92557 0.91992 0.96468 0.92531 0.93542 0.88550 0.96547 0.78141 0.82569 0.81183 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.41 2.27 -90.57 -0.21 -1.62 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.05 5.36 -26.61 -0.14 -2.19 16 5 C 0.14 2.88 6.51 -3.71 -0.02 2.86 16 6 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 7 C -0.26 -7.23 9.59 -15.06 -0.14 -7.37 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.14 16 10 N -0.90 -26.78 11.19 55.49 0.62 -26.16 16 11 Si 0.90 22.55 29.59 -169.99 -5.03 17.52 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.17 3.98 4.89 -3.71 -0.02 3.96 16 16 C 0.12 2.33 2.06 -67.81 -0.14 2.19 16 17 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 18 N -0.71 -11.19 4.37 -55.06 -0.24 -11.43 16 19 C 0.58 10.25 7.75 -12.95 -0.10 10.15 16 20 O -0.51 -11.35 16.52 5.16 0.09 -11.26 16 21 C 0.02 0.33 7.01 -82.10 -0.58 -0.24 16 22 C -0.08 -1.17 10.60 -38.95 -0.41 -1.58 16 23 C -0.21 -2.83 7.26 -38.67 -0.28 -3.11 16 24 S 0.13 1.29 23.31 -107.50 -2.51 -1.21 16 25 C -0.19 -1.62 11.13 28.86 0.32 -1.30 16 26 C -0.11 -1.03 10.16 -40.84 -0.42 -1.44 16 27 C 0.06 0.68 7.67 -84.00 -0.64 0.04 16 28 N -0.54 -6.21 6.14 -7.34 -0.05 -6.25 16 29 H 0.42 3.47 8.14 -40.82 -0.33 3.14 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.52 7.35 -51.93 -0.38 0.13 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 1.13 7.94 -51.92 -0.41 0.72 16 37 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.10 2.74 6.04 -51.93 -0.31 2.43 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.39 4.62 7.37 -40.82 -0.30 4.32 16 41 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 42 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 43 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -33.58 363.40 -10.60 -44.18 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.91 Total: 5.34 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -2.53 Total: -0.97 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.18 Total: -59.06 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.58 -10.60 -44.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.899 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds