Wall clock time and date at job start Tue Mar 31 2020 18:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46242 * 2 1 4 4 C 1.53043 * 109.45621 * 119.95933 * 2 1 3 5 5 C 1.53185 * 109.31050 * 181.38569 * 4 2 1 6 6 N 1.46925 * 108.77676 * 305.35914 * 5 4 2 7 7 C 1.36933 * 120.63232 * 233.58640 * 6 5 4 8 8 H 1.07995 * 120.00401 * 27.68812 * 7 6 5 9 9 C 1.38814 * 119.99974 * 207.68588 * 7 6 5 10 10 N 1.31618 * 120.00196 * 17.37377 * 9 7 6 11 11 Si 1.86801 * 120.00160 * 197.36694 * 9 7 6 12 12 H 1.48498 * 109.46839 * 60.00063 * 11 9 7 13 13 H 1.48493 * 109.47357 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47296 * 300.00284 * 11 9 7 15 15 C 1.46926 * 118.73411 * 53.61697 * 6 5 4 16 16 C 1.53041 * 109.46098 * 240.02427 * 2 1 3 17 17 H 1.09002 * 109.49508 * 298.60049 * 16 2 1 18 18 N 1.46497 * 109.49590 * 58.66408 * 16 2 1 19 19 C 1.34781 * 119.99644 * 204.99914 * 18 16 2 20 20 O 1.21728 * 120.00441 * 359.97438 * 19 18 16 21 21 C 1.46453 * 119.99555 * 180.02562 * 19 18 16 22 22 C 1.37467 * 125.80569 * 180.02562 * 21 19 18 23 23 C 1.40650 * 107.55829 * 179.97438 * 22 21 19 24 24 S 1.76023 * 142.39858 * 180.02562 * 23 22 21 25 25 C 1.75588 * 91.31305 * 180.02562 * 24 23 22 26 26 C 1.32769 * 110.47402 * 359.97438 * 25 24 23 27 27 C 1.38244 * 108.03346 * 359.97438 * 23 22 21 28 28 N 1.37922 * 125.81031 * 359.70946 * 21 19 18 29 29 H 0.97004 * 125.68173 * 359.97438 * 28 21 19 30 30 H 1.09001 * 109.47373 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47494 * 299.97793 * 1 2 3 32 32 H 1.09006 * 109.46785 * 59.97644 * 1 2 3 33 33 H 1.09000 * 109.49266 * 301.33797 * 4 2 1 34 34 H 1.08997 * 109.50075 * 61.43294 * 4 2 1 35 35 H 1.09002 * 109.59089 * 65.15599 * 5 4 2 36 36 H 1.09010 * 109.58567 * 185.43168 * 5 4 2 37 37 H 0.96995 * 120.00762 * 180.02562 * 10 9 7 38 38 H 1.08999 * 109.58225 * 186.60662 * 15 6 5 39 39 H 1.08995 * 109.59380 * 66.17778 * 15 6 5 40 40 H 0.96998 * 120.00461 * 24.72894 * 18 16 2 41 41 H 1.08008 * 126.21838 * 0.02562 * 22 21 19 42 42 H 1.08004 * 124.76687 * 180.02562 * 25 24 23 43 43 H 1.08004 * 122.16803 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7206 1.2502 5 6 3.5713 -0.6885 1.2644 6 7 4.0678 -1.2490 0.0003 7 6 4.9763 -2.2735 0.0005 8 1 5.0096 -2.9656 0.8289 9 6 5.8546 -2.4226 -1.0640 10 7 6.0605 -1.4208 -1.8926 11 14 6.7445 -4.0448 -1.3207 12 1 5.7496 -5.1287 -1.5220 13 1 7.6186 -3.9461 -2.5171 14 1 7.5732 -4.3491 -0.1266 15 6 3.5715 -0.6888 -1.2640 16 6 2.0399 -0.7210 -1.2500 17 1 1.6974 -1.7557 -1.2383 18 7 1.5257 -0.0491 -2.4459 19 6 1.3972 -0.7329 -3.6002 20 8 1.7090 -1.9085 -3.6492 21 6 0.8837 -0.0610 -4.7959 22 6 0.7042 -0.6405 -6.0295 23 6 0.1947 0.3468 -6.8920 24 16 -0.3349 0.6122 -8.5496 25 6 -0.7027 2.2943 -8.2055 26 6 -0.4321 2.5788 -6.9372 27 6 0.0684 1.5202 -6.1721 28 7 0.4920 1.2591 -4.8744 29 1 0.5103 1.8990 -4.1456 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8901 32 1 -0.3633 0.5142 -0.8898 33 1 1.6571 -0.2204 2.1398 34 1 1.6978 -1.7555 1.2386 35 1 3.9143 0.3410 1.3675 36 1 3.9415 -1.2822 2.1003 37 1 6.6739 -1.5250 -2.6367 38 1 3.9417 -1.2850 -2.0980 39 1 3.9144 0.3406 -1.3673 40 1 1.2739 0.8868 -2.4060 41 1 0.9152 -1.6675 -6.2889 42 1 -1.0948 2.9985 -8.9244 43 1 -0.5893 3.5636 -6.5227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968505200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:37 Heat of formation + Delta-G solvation = 30.300023 kcal Electronic energy + Delta-G solvation = -26363.516863 eV Core-core repulsion = 22728.441386 eV Total energy + Delta-G solvation = -3635.075477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42801 -40.80335 -39.12179 -36.27881 -36.14361 -34.77708 -32.86734 -32.04161 -30.94122 -29.25313 -28.77191 -25.96434 -24.93991 -23.97390 -22.96398 -22.60530 -21.47670 -21.43853 -20.54644 -19.61195 -18.78381 -17.57978 -17.24349 -16.81551 -16.40117 -16.35644 -15.71285 -15.51881 -15.34007 -15.18336 -15.03238 -14.90672 -14.68609 -14.47668 -14.12415 -13.89475 -13.56576 -13.31194 -13.08915 -12.83474 -12.72825 -12.61385 -12.56131 -12.37200 -12.22121 -11.93974 -11.75118 -11.67250 -11.60841 -11.25166 -11.13620 -10.78907 -10.56661 -10.24372 -9.12634 -8.72292 -8.65953 -7.91668 -5.36920 -0.25697 0.57313 0.84837 1.16467 1.39490 1.45857 1.50206 1.71912 1.78264 2.06598 2.23403 2.47887 3.24953 3.61163 3.75151 3.82610 3.84211 3.96334 3.98279 4.12000 4.37777 4.44652 4.52216 4.55894 4.63159 4.70068 4.75663 4.89143 4.93688 4.95980 5.07778 5.08309 5.15091 5.15860 5.24192 5.34169 5.40341 5.41863 5.50377 5.53755 5.60362 5.74070 6.28365 6.34567 6.49155 7.06319 7.11954 7.82794 8.31439 9.13002 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.003262 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.394706 B = 8582.729385 C =10054.268448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.266 4.266 8 H 0.069 0.931 9 C -0.049 4.049 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.285 1.285 13 H -0.294 1.294 14 H -0.266 1.266 15 C 0.178 3.822 16 C 0.141 3.859 17 H 0.053 0.947 18 N -0.698 5.698 19 C 0.581 3.419 20 O -0.569 6.569 21 C -0.001 4.001 22 C -0.091 4.091 23 C -0.254 4.254 24 S 0.126 5.874 25 C -0.166 4.166 26 C -0.126 4.126 27 C 0.073 3.927 28 N -0.526 5.526 29 H 0.433 0.567 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.022 0.978 36 H 0.056 0.944 37 H 0.247 0.753 38 H 0.043 0.957 39 H 0.000 1.000 40 H 0.408 0.592 41 H 0.143 0.857 42 H 0.211 0.789 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.797 13.463 -7.326 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.396 4.396 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.211 1.211 13 H -0.221 1.221 14 H -0.192 1.192 15 C 0.051 3.949 16 C 0.035 3.965 17 H 0.072 0.928 18 N -0.349 5.349 19 C 0.368 3.632 20 O -0.448 6.448 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.373 4.373 24 S 0.385 5.615 25 C -0.302 4.302 26 C -0.158 4.158 27 C -0.047 4.047 28 N -0.130 5.130 29 H 0.274 0.726 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.244 0.756 41 H 0.161 0.839 42 H 0.228 0.772 43 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -18.532 11.838 -8.536 23.589 hybrid contribution 1.226 0.268 1.240 1.764 sum -17.306 12.106 -7.296 22.345 Atomic orbital electron populations 1.21782 0.92929 1.01757 1.02819 1.21284 0.96924 0.99458 0.92700 0.89998 1.21972 0.95658 1.00305 0.97573 1.21184 0.93603 0.96232 0.87952 1.44217 1.48121 1.39866 1.01001 1.19461 1.09728 1.04104 1.06316 0.91359 1.25770 0.98603 1.00248 0.99861 1.70149 1.38451 1.30819 1.18150 0.85440 0.78060 0.80281 0.77364 1.21149 1.22062 1.19159 1.20790 0.89615 0.95093 0.89424 1.21594 0.94939 0.96054 0.83949 0.92836 1.45692 1.65119 1.14495 1.09598 1.17273 0.77547 0.85871 0.82471 1.90888 1.51742 1.17529 1.84615 1.19973 1.11034 0.85071 0.95455 1.20495 1.02533 0.99094 0.90099 1.22907 1.15667 0.98381 1.00375 1.83942 1.66491 1.07182 1.03921 1.25748 1.05846 0.98906 0.99700 1.19211 1.04606 0.98999 0.93020 1.18862 1.05198 0.95654 0.84996 1.41790 1.52557 1.08936 1.09751 0.72575 0.93837 0.90144 0.92003 0.88380 0.93100 0.95971 0.92576 0.94417 0.93826 0.98162 0.75566 0.83939 0.77248 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.08 -2.42 2.27 -10.76 -0.02 -2.44 16 3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.12 -3.54 5.36 30.67 0.16 -3.38 16 5 C 0.14 5.42 6.51 86.36 0.56 5.98 16 6 N -0.61 -31.42 2.99 -699.11 -2.09 -33.51 16 7 C -0.27 -15.35 9.59 84.03 0.81 -14.54 16 8 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 9 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 10 N -0.93 -58.34 11.19 21.65 0.24 -58.10 16 11 Si 0.96 48.17 29.59 68.60 2.03 50.20 16 12 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 13 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 15 C 0.18 8.94 4.89 86.36 0.42 9.37 16 16 C 0.14 5.41 2.06 45.07 0.09 5.50 16 17 H 0.05 2.44 7.58 -2.39 -0.02 2.42 16 18 N -0.70 -22.25 4.37 -446.32 -1.95 -24.20 16 19 C 0.58 21.70 7.75 86.38 0.67 22.37 16 20 O -0.57 -27.50 16.52 -4.44 -0.07 -27.58 16 21 C 0.00 -0.02 7.01 40.14 0.28 0.26 16 22 C -0.09 -2.86 10.60 22.68 0.24 -2.62 16 23 C -0.25 -6.59 7.26 22.86 0.17 -6.42 16 24 S 0.13 2.36 23.31 -56.49 -1.32 1.04 16 25 C -0.17 -2.07 11.13 66.64 0.74 -1.33 16 26 C -0.13 -1.80 10.16 21.49 0.22 -1.58 16 27 C 0.07 1.58 7.67 38.40 0.29 1.88 16 28 N -0.53 -11.43 6.14 -177.14 -1.09 -12.52 16 29 H 0.43 6.22 8.14 -92.71 -0.75 5.47 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.14 7.35 -2.38 -0.02 1.13 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.06 2.21 7.94 -2.38 -0.02 2.19 16 37 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.04 2.66 6.04 -2.39 -0.01 2.64 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.41 9.26 7.37 -92.71 -0.68 8.58 16 41 H 0.14 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.21 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.30 16 Total: -1.00 -80.23 363.40 1.07 -79.16 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.39 Total: 17.20 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.70 Total: 8.29 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -4.89 Total: -128.32 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.07 Total: -27.58 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -1.32 Total: 1.04 kcal Total: -80.23 1.07 -79.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.464 kcal (2) G-P(sol) polarization free energy of solvation -80.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds