Wall clock time and date at job start Tue Mar 31 2020 18:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45681 * 2 1 4 4 C 1.53349 * 109.41773 * 240.10120 * 2 1 3 5 5 C 1.53194 * 109.14721 * 178.67307 * 4 2 1 6 6 N 1.46924 * 108.89447 * 54.57940 * 5 4 2 7 7 C 1.36930 * 120.63300 * 126.34039 * 6 5 4 8 8 H 1.07996 * 120.00049 * 331.82927 * 7 6 5 9 9 C 1.38816 * 120.00324 * 151.82723 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.06571 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.06593 * 9 7 6 12 12 H 1.48500 * 109.46960 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47338 * 119.99948 * 11 9 7 14 14 H 1.48503 * 109.47085 * 239.99957 * 11 9 7 15 15 C 1.46929 * 118.73622 * 306.31812 * 6 5 4 16 16 C 1.53032 * 109.46055 * 119.97042 * 2 1 3 17 17 H 1.08999 * 109.52692 * 301.35818 * 16 2 1 18 18 N 1.46506 * 109.49740 * 61.43819 * 16 2 1 19 19 C 1.34777 * 119.99774 * 204.83791 * 18 16 2 20 20 O 1.21734 * 120.00545 * 359.97438 * 19 18 16 21 21 C 1.46452 * 119.99666 * 179.97438 * 19 18 16 22 22 C 1.37471 * 125.80767 * 180.02562 * 21 19 18 23 23 C 1.40657 * 107.55586 * 180.02562 * 22 21 19 24 24 S 1.76020 * 142.39355 * 179.97438 * 23 22 21 25 25 C 1.75590 * 91.31298 * 179.97438 * 24 23 22 26 26 C 1.32772 * 110.46963 * 0.04664 * 25 24 23 27 27 C 1.38244 * 108.03342 * 359.97438 * 23 22 21 28 28 N 1.37923 * 125.80764 * 359.71681 * 21 19 18 29 29 H 0.96998 * 125.68466 * 359.97071 * 28 21 19 30 30 H 1.08998 * 109.47606 * 300.02904 * 1 2 3 31 31 H 1.09006 * 109.47638 * 60.03104 * 1 2 3 32 32 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68685 * 58.70988 * 4 2 1 34 34 H 1.08997 * 109.47481 * 298.50878 * 4 2 1 35 35 H 1.08999 * 109.58554 * 294.71486 * 5 4 2 36 36 H 1.09001 * 109.58356 * 174.43691 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58736 * 173.39352 * 15 6 5 39 39 H 1.09002 * 109.58596 * 293.82293 * 15 6 5 40 40 H 0.96994 * 120.00259 * 24.83329 * 18 16 2 41 41 H 1.08003 * 126.21595 * 359.97401 * 22 21 19 42 42 H 1.07997 * 124.76755 * 179.97438 * 25 24 23 43 43 H 1.08004 * 122.16054 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2643 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0045 -2.9700 -0.8249 9 6 5.8615 -2.4163 1.0595 10 7 6.0659 -1.4125 1.8861 11 14 6.7621 -4.0330 1.3127 12 1 6.3594 -4.9948 0.2553 13 1 8.2269 -3.8005 1.2390 14 1 6.4156 -4.5893 2.6452 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6571 -0.2214 2.1401 18 7 1.5802 -2.1118 1.2340 19 6 1.4548 -2.7934 2.3899 20 8 1.7238 -2.2534 3.4473 21 6 0.9947 -4.1837 2.3740 22 6 0.8240 -4.9870 3.4763 23 6 0.3726 -6.2396 3.0227 24 16 -0.1053 -7.8373 3.5859 25 6 -0.4214 -8.3667 1.9418 26 6 -0.1713 -7.3862 1.0822 27 6 0.2725 -6.1851 1.6450 28 7 0.6534 -4.9078 1.2509 29 1 0.6774 -4.5810 0.3380 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6592 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9142 0.3412 -1.3674 36 1 3.9437 -1.2827 -2.0987 37 1 6.6846 -1.5123 2.6264 38 1 3.9416 -1.2847 2.0983 39 1 3.9143 0.3409 1.3673 40 1 1.3660 -2.5422 0.3915 41 1 1.0046 -4.7075 4.5038 42 1 -0.7692 -9.3518 1.6681 43 1 -0.3026 -7.5081 0.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968505204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:48 Heat of formation + Delta-G solvation = 53.511498 kcal Electronic energy + Delta-G solvation = -27104.596959 eV Core-core repulsion = 23470.528007 eV Total energy + Delta-G solvation = -3634.068952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.24922 -39.41681 -37.50918 -35.25870 -34.21428 -32.93822 -31.10063 -30.84241 -29.56912 -28.03631 -27.24269 -24.21973 -23.55616 -22.74419 -21.88395 -21.16144 -20.43136 -19.74326 -18.77387 -18.58868 -16.77065 -16.47577 -15.48190 -15.29903 -15.14502 -14.80024 -14.36461 -14.10954 -14.00498 -13.79663 -13.66892 -13.48456 -13.26778 -13.01678 -12.86026 -12.59359 -12.01058 -11.87598 -11.67975 -11.58633 -11.44787 -11.16503 -10.95117 -10.88900 -10.75593 -10.58084 -10.24751 -9.99200 -9.81279 -9.70940 -9.63508 -9.53380 -8.53982 -8.48792 -8.03599 -7.65712 -6.68763 -5.80038 -3.23714 0.80038 1.52185 2.04698 2.09007 2.74994 2.89851 3.37302 3.44585 3.47022 3.53541 3.75690 4.48129 4.72562 4.96180 5.02895 5.14237 5.15400 5.27459 5.30757 5.38318 5.49573 5.52814 5.73335 5.78554 5.84592 5.89867 5.97325 5.98926 6.07068 6.21061 6.28475 6.35806 6.44838 6.50211 6.55753 6.67460 6.68263 6.80958 6.90050 7.29034 7.32372 7.62914 7.77432 7.94224 8.43350 8.59167 9.18329 9.82264 10.37643 11.27869 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004548 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.715627 B = 6154.635664 C = 7540.980667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.257 4.257 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.287 1.287 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.080 0.920 18 N -0.694 5.694 19 C 0.583 3.417 20 O -0.526 6.526 21 C 0.028 3.972 22 C -0.083 4.083 23 C -0.213 4.213 24 S 0.121 5.879 25 C -0.196 4.196 26 C -0.109 4.109 27 C 0.056 3.944 28 N -0.538 5.538 29 H 0.418 0.582 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.053 0.947 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.389 0.611 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.802 -7.359 -3.331 17.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.725 3.275 12 H -0.204 1.204 13 H -0.216 1.216 14 H -0.214 1.214 15 C 0.033 3.967 16 C 0.021 3.979 17 H 0.098 0.902 18 N -0.343 5.343 19 C 0.368 3.632 20 O -0.402 6.402 21 C -0.087 4.087 22 C -0.114 4.114 23 C -0.334 4.334 24 S 0.380 5.620 25 C -0.332 4.332 26 C -0.143 4.143 27 C -0.062 4.062 28 N -0.140 5.140 29 H 0.256 0.744 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.045 0.955 40 H 0.224 0.776 41 H 0.173 0.827 42 H 0.187 0.813 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.554 -7.532 -1.202 17.324 hybrid contribution 0.664 -0.262 -2.190 2.303 sum -14.890 -7.793 -3.392 17.145 Atomic orbital electron populations 1.21852 0.95968 1.01208 1.01146 1.21379 0.94580 1.00050 0.95345 0.90163 1.22134 0.99376 0.99093 0.96164 1.20932 0.90591 0.96650 0.90337 1.43979 1.48290 1.39621 0.99088 1.19077 1.09955 1.03019 1.06626 0.91950 1.25006 0.97058 0.97143 0.99775 1.69998 1.37111 1.28871 1.17907 0.86349 0.79324 0.83865 0.77979 1.20428 1.21631 1.21359 1.21221 0.86474 0.97969 0.91059 1.21869 0.99136 0.79776 0.97151 0.90222 1.45721 1.66674 1.14438 1.07487 1.16831 0.78200 0.83326 0.84793 1.90857 1.50634 1.68200 1.30544 1.20594 1.08644 0.93652 0.85819 1.20383 1.03240 0.89356 0.98383 1.22641 1.14650 0.99906 0.96185 1.83816 1.69301 1.02662 1.06191 1.25151 1.08960 1.03095 0.95966 1.18882 1.04478 0.90061 1.00850 1.18314 1.07760 0.87597 0.92523 1.41983 1.54509 1.08941 1.08578 0.74367 0.92927 0.93057 0.93314 0.92625 0.93148 0.96337 0.92862 0.93545 0.88395 0.95458 0.77646 0.82716 0.81258 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.05 37.16 0.34 -1.41 16 2 C -0.09 -1.40 2.48 -90.42 -0.22 -1.62 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.90 5.23 -26.45 -0.14 -2.04 16 5 C 0.14 2.71 6.50 -3.71 -0.02 2.69 16 6 N -0.59 -13.81 2.91 -172.32 -0.50 -14.32 16 7 C -0.26 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.64 7.88 -52.49 -0.41 1.23 16 9 C 0.01 0.27 4.92 -17.43 -0.09 0.19 16 10 N -0.90 -26.29 11.20 55.49 0.62 -25.67 16 11 Si 0.89 22.27 29.59 -169.99 -5.03 17.24 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 C 0.16 3.72 4.90 -3.71 -0.02 3.70 16 16 C 0.13 2.30 2.24 -67.81 -0.15 2.15 16 17 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 18 N -0.69 -11.87 4.25 -55.06 -0.23 -12.11 16 19 C 0.58 11.06 7.74 -12.95 -0.10 10.96 16 20 O -0.53 -11.79 16.53 5.16 0.09 -11.71 16 21 C 0.03 0.47 7.01 -82.10 -0.58 -0.10 16 22 C -0.08 -1.37 10.60 -38.95 -0.41 -1.78 16 23 C -0.21 -3.15 7.26 -38.67 -0.28 -3.43 16 24 S 0.12 1.40 23.31 -107.50 -2.51 -1.11 16 25 C -0.20 -1.91 11.13 28.86 0.32 -1.59 16 26 C -0.11 -1.19 10.16 -40.84 -0.42 -1.60 16 27 C 0.06 0.77 7.67 -84.00 -0.64 0.13 16 28 N -0.54 -7.39 6.14 -7.34 -0.05 -7.43 16 29 H 0.42 4.63 8.14 -40.82 -0.33 4.30 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.72 6.41 -51.93 -0.33 0.39 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 37 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.10 2.72 6.06 -51.93 -0.31 2.41 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.39 5.82 5.72 -40.82 -0.23 5.59 16 41 H 0.16 2.45 8.06 -52.48 -0.42 2.03 16 42 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 360.32 15.07 5.43 5.43 Total: -1.00 -32.24 360.32 -10.50 -42.74 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.76 Total: 7.69 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.56 Total: -0.76 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -0.16 Total: -59.52 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.51 Total: -1.11 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.24 -10.50 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.252 kcal (2) G-P(sol) polarization free energy of solvation -32.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds