Wall clock time and date at job start Tue Mar 31 2020 18:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45681 * 2 1 4 4 C 1.53349 * 109.41773 * 240.10120 * 2 1 3 5 5 C 1.53194 * 109.14721 * 178.67307 * 4 2 1 6 6 N 1.46924 * 108.89447 * 54.57940 * 5 4 2 7 7 C 1.36930 * 120.63300 * 126.34039 * 6 5 4 8 8 H 1.07996 * 120.00049 * 331.82927 * 7 6 5 9 9 C 1.38816 * 120.00324 * 151.82723 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.06571 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.06593 * 9 7 6 12 12 H 1.48500 * 109.46960 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47338 * 119.99948 * 11 9 7 14 14 H 1.48503 * 109.47085 * 239.99957 * 11 9 7 15 15 C 1.46929 * 118.73622 * 306.31812 * 6 5 4 16 16 C 1.53032 * 109.46055 * 119.97042 * 2 1 3 17 17 H 1.08999 * 109.52692 * 301.35818 * 16 2 1 18 18 N 1.46506 * 109.49740 * 61.43819 * 16 2 1 19 19 C 1.34777 * 119.99774 * 204.83791 * 18 16 2 20 20 O 1.21734 * 120.00545 * 359.97438 * 19 18 16 21 21 C 1.46452 * 119.99666 * 179.97438 * 19 18 16 22 22 C 1.37471 * 125.80767 * 180.02562 * 21 19 18 23 23 C 1.40657 * 107.55586 * 180.02562 * 22 21 19 24 24 S 1.76020 * 142.39355 * 179.97438 * 23 22 21 25 25 C 1.75590 * 91.31298 * 179.97438 * 24 23 22 26 26 C 1.32772 * 110.46963 * 0.04664 * 25 24 23 27 27 C 1.38244 * 108.03342 * 359.97438 * 23 22 21 28 28 N 1.37923 * 125.80764 * 359.71681 * 21 19 18 29 29 H 0.96998 * 125.68466 * 359.97071 * 28 21 19 30 30 H 1.08998 * 109.47606 * 300.02904 * 1 2 3 31 31 H 1.09006 * 109.47638 * 60.03104 * 1 2 3 32 32 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.68685 * 58.70988 * 4 2 1 34 34 H 1.08997 * 109.47481 * 298.50878 * 4 2 1 35 35 H 1.08999 * 109.58554 * 294.71486 * 5 4 2 36 36 H 1.09001 * 109.58356 * 174.43691 * 5 4 2 37 37 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 38 38 H 1.09002 * 109.58736 * 173.39352 * 15 6 5 39 39 H 1.09002 * 109.58596 * 293.82293 * 15 6 5 40 40 H 0.96994 * 120.00259 * 24.83329 * 18 16 2 41 41 H 1.08003 * 126.21595 * 359.97401 * 22 21 19 42 42 H 1.07997 * 124.76755 * 179.97438 * 25 24 23 43 43 H 1.08004 * 122.16054 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2538 5 6 3.5714 -0.6883 -1.2643 6 7 4.0679 -1.2487 -0.0002 7 6 4.9764 -2.2732 -0.0003 8 1 5.0045 -2.9700 -0.8249 9 6 5.8615 -2.4163 1.0595 10 7 6.0659 -1.4125 1.8861 11 14 6.7621 -4.0330 1.3127 12 1 6.3594 -4.9948 0.2553 13 1 8.2269 -3.8005 1.2390 14 1 6.4156 -4.5893 2.6452 15 6 3.5714 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2500 17 1 1.6571 -0.2214 2.1401 18 7 1.5802 -2.1118 1.2340 19 6 1.4548 -2.7934 2.3899 20 8 1.7238 -2.2534 3.4473 21 6 0.9947 -4.1837 2.3740 22 6 0.8240 -4.9870 3.4763 23 6 0.3726 -6.2396 3.0227 24 16 -0.1053 -7.8373 3.5859 25 6 -0.4214 -8.3667 1.9418 26 6 -0.1713 -7.3862 1.0822 27 6 0.2725 -6.1851 1.6450 28 7 0.6534 -4.9078 1.2509 29 1 0.6774 -4.5810 0.3380 30 1 -0.3634 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6592 -0.2216 -2.1448 34 1 1.6980 -1.7559 -1.2421 35 1 3.9142 0.3412 -1.3674 36 1 3.9437 -1.2827 -2.0987 37 1 6.6846 -1.5123 2.6264 38 1 3.9416 -1.2847 2.0983 39 1 3.9143 0.3409 1.3673 40 1 1.3660 -2.5422 0.3915 41 1 1.0046 -4.7075 4.5038 42 1 -0.7692 -9.3518 1.6681 43 1 -0.3026 -7.5081 0.0171 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968505204.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:47 Heat of formation + Delta-G solvation = 32.900009 kcal Electronic energy + Delta-G solvation = -27105.490740 eV Core-core repulsion = 23470.528007 eV Total energy + Delta-G solvation = -3634.962733 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.40133 -40.86223 -39.03703 -36.23904 -35.97935 -34.43028 -32.87333 -32.01131 -31.10540 -29.28219 -28.74463 -25.93389 -24.78463 -23.95456 -23.24717 -22.75110 -21.55442 -20.98301 -20.31460 -19.74713 -18.65254 -17.64218 -16.94754 -16.76521 -16.39529 -16.28252 -15.76119 -15.59418 -15.34084 -15.07117 -14.99042 -14.88384 -14.55933 -14.55785 -14.16192 -13.87882 -13.59504 -13.18648 -13.03088 -12.82958 -12.79437 -12.68162 -12.56434 -12.49101 -12.23918 -11.97656 -11.76223 -11.60092 -11.40759 -11.17770 -11.09904 -10.77542 -10.58383 -10.10727 -9.10266 -8.68292 -8.64021 -7.89835 -5.34402 -0.22847 0.57869 0.87950 1.16033 1.35380 1.40169 1.46725 1.76576 1.79431 2.15927 2.34752 2.44854 3.26800 3.65084 3.73880 3.83221 3.87901 3.95362 3.99268 4.09591 4.39905 4.48244 4.53767 4.64108 4.68422 4.73687 4.78755 4.86260 4.93457 4.97313 5.05429 5.07650 5.15406 5.21182 5.23295 5.42076 5.43527 5.45957 5.53071 5.56998 5.65488 5.70290 6.30494 6.36395 6.54685 7.11717 7.15100 7.85086 8.35414 9.15159 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.004548 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.715627 B = 6154.635664 C = 7540.980667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.048 4.048 10 N -0.932 5.932 11 Si 0.948 3.052 12 H -0.261 1.261 13 H -0.290 1.290 14 H -0.304 1.304 15 C 0.170 3.830 16 C 0.137 3.863 17 H 0.068 0.932 18 N -0.681 5.681 19 C 0.580 3.420 20 O -0.574 6.574 21 C 0.000 4.000 22 C -0.095 4.095 23 C -0.253 4.253 24 S 0.127 5.873 25 C -0.167 4.167 26 C -0.126 4.126 27 C 0.069 3.931 28 N -0.528 5.528 29 H 0.430 0.570 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.245 0.755 38 H 0.047 0.953 39 H 0.000 1.000 40 H 0.402 0.598 41 H 0.144 0.856 42 H 0.211 0.789 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.498 -9.720 -6.534 21.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.088 0.912 9 C -0.243 4.243 10 N -0.578 5.578 11 Si 0.778 3.222 12 H -0.185 1.185 13 H -0.217 1.217 14 H -0.232 1.232 15 C 0.042 3.958 16 C 0.031 3.969 17 H 0.086 0.914 18 N -0.330 5.330 19 C 0.367 3.633 20 O -0.454 6.454 21 C -0.115 4.115 22 C -0.126 4.126 23 C -0.372 4.372 24 S 0.386 5.614 25 C -0.302 4.302 26 C -0.159 4.159 27 C -0.052 4.052 28 N -0.131 5.131 29 H 0.271 0.729 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.018 0.982 40 H 0.239 0.761 41 H 0.162 0.838 42 H 0.228 0.772 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.279 -9.888 -4.495 21.262 hybrid contribution 1.461 0.374 -1.210 1.933 sum -16.818 -9.514 -5.705 20.147 Atomic orbital electron populations 1.21769 0.93022 1.02055 1.02435 1.21338 0.96851 0.99306 0.93143 0.90215 1.22021 0.95549 1.00336 0.97516 1.21161 0.93746 0.96010 0.88111 1.44171 1.48052 1.39448 1.00639 1.19421 1.09065 1.03413 1.05941 0.91230 1.25667 0.98753 0.99512 1.00413 1.70158 1.38398 1.30640 1.18604 0.85486 0.78241 0.81276 0.77242 1.18501 1.21692 1.23222 1.20889 0.89934 0.95235 0.89692 1.21570 0.95354 0.80921 0.99086 0.91381 1.45549 1.65853 1.13945 1.07702 1.17194 0.77393 0.84213 0.84454 1.90820 1.52842 1.69528 1.32211 1.20128 1.11288 0.92858 0.87178 1.20479 1.03295 0.90693 0.98143 1.22910 1.16172 1.00799 0.97334 1.83838 1.68941 1.00673 1.07930 1.25729 1.05995 1.04316 0.94202 1.19210 1.05138 0.88754 1.02781 1.18885 1.05967 0.87953 0.92353 1.41833 1.54048 1.08852 1.08374 0.72925 0.93124 0.90349 0.92688 0.88792 0.92053 0.96814 0.92423 0.94585 0.93407 0.98166 0.76086 0.83787 0.77176 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.05 71.98 0.65 -2.17 16 2 C -0.09 -2.41 2.48 -10.67 -0.03 -2.44 16 3 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 4 C -0.12 -3.03 5.23 30.78 0.16 -2.87 16 5 C 0.13 4.96 6.50 86.36 0.56 5.52 16 6 N -0.60 -28.54 2.91 -699.08 -2.04 -30.58 16 7 C -0.25 -13.32 9.58 84.04 0.81 -12.51 16 8 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 9 C -0.05 -2.74 4.92 84.86 0.42 -2.33 16 10 N -0.93 -57.70 11.20 21.65 0.24 -57.45 16 11 Si 0.95 47.01 29.59 68.60 2.03 49.04 16 12 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 13 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 14 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 15 C 0.17 8.31 4.90 86.36 0.42 8.73 16 16 C 0.14 5.08 2.24 45.07 0.10 5.19 16 17 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 18 N -0.68 -23.43 4.25 -446.32 -1.90 -25.33 16 19 C 0.58 22.98 7.74 86.38 0.67 23.65 16 20 O -0.57 -27.67 16.53 -4.46 -0.07 -27.74 16 21 C 0.00 0.01 7.01 40.14 0.28 0.30 16 22 C -0.10 -3.25 10.60 22.68 0.24 -3.01 16 23 C -0.25 -7.30 7.26 22.86 0.17 -7.14 16 24 S 0.13 2.68 23.31 -56.49 -1.32 1.36 16 25 C -0.17 -2.50 11.13 66.64 0.74 -1.76 16 26 C -0.13 -2.22 10.16 21.49 0.22 -2.00 16 27 C 0.07 1.73 7.67 38.40 0.29 2.02 16 28 N -0.53 -13.83 6.14 -177.13 -1.09 -14.92 16 29 H 0.43 8.60 8.14 -92.71 -0.75 7.84 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.27 8.14 -2.38 -0.02 1.26 16 32 H 0.05 1.09 7.54 -2.39 -0.02 1.07 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.51 6.41 -2.39 -0.02 1.49 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 37 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.40 11.45 5.72 -92.71 -0.53 10.92 16 41 H 0.14 5.00 8.06 -2.91 -0.02 4.98 16 42 H 0.21 1.43 8.06 -2.91 -0.02 1.40 16 43 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -75.87 360.32 1.34 -74.53 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.23 Total: 21.91 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.71 Total: 9.18 kcal Atomic # 7 Polarization: -123.50 SS G_CDS: -4.78 Total: -128.28 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.07 Total: -27.74 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.32 Total: 1.36 kcal Total: -75.87 1.34 -74.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505204.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.430 kcal (2) G-P(sol) polarization free energy of solvation -75.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds