Wall clock time and date at job start Tue Mar 31 2020 18:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.44787 * 2 1 4 4 C 1.53038 * 109.48467 * 240.05263 * 2 1 3 5 5 C 1.53194 * 109.33738 * 178.64741 * 4 2 1 6 6 N 1.46926 * 108.77811 * 54.62208 * 5 4 2 7 7 C 1.36927 * 120.63341 * 126.41310 * 6 5 4 8 8 H 1.07999 * 120.00084 * 207.65661 * 7 6 5 9 9 C 1.38811 * 120.00289 * 27.66092 * 7 6 5 10 10 N 1.31621 * 119.99938 * 17.37209 * 9 7 6 11 11 Si 1.86807 * 120.00194 * 197.37981 * 9 7 6 12 12 H 1.48498 * 109.46931 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46933 * 119.99689 * 11 9 7 14 14 H 1.48498 * 109.46848 * 239.99815 * 11 9 7 15 15 C 1.46926 * 118.73486 * 306.39230 * 6 5 4 16 16 C 1.53042 * 109.45959 * 119.97144 * 2 1 3 17 17 H 1.08991 * 109.50077 * 61.39769 * 16 2 1 18 18 N 1.46509 * 109.49235 * 301.33678 * 16 2 1 19 19 C 1.34778 * 119.99724 * 155.07017 * 18 16 2 20 20 O 1.21731 * 119.99948 * 359.97438 * 19 18 16 21 21 C 1.46448 * 119.99932 * 179.97438 * 19 18 16 22 22 C 1.37462 * 125.80802 * 179.68450 * 21 19 18 23 23 C 1.40661 * 107.55722 * 179.87942 * 22 21 19 24 24 S 1.76015 * 142.39568 * 180.02562 * 23 22 21 25 25 C 1.75587 * 91.31125 * 180.34350 * 24 23 22 26 26 C 1.32770 * 110.47583 * 0.02562 * 25 24 23 27 27 C 1.38246 * 108.03329 * 0.39057 * 23 22 21 28 28 N 1.37920 * 125.80754 * 0.02562 * 21 19 18 29 29 H 0.97008 * 125.68304 * 359.97438 * 28 21 19 30 30 H 1.08993 * 109.47124 * 300.03149 * 1 2 3 31 31 H 1.09001 * 109.47043 * 60.03605 * 1 2 3 32 32 H 1.09007 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49797 * 58.68303 * 4 2 1 34 34 H 1.09003 * 109.50154 * 298.61008 * 4 2 1 35 35 H 1.08998 * 109.58616 * 294.83094 * 5 4 2 36 36 H 1.09006 * 109.58667 * 174.40646 * 5 4 2 37 37 H 0.97000 * 119.99786 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.59012 * 293.82241 * 15 6 5 39 39 H 1.09000 * 109.59033 * 173.39706 * 15 6 5 40 40 H 0.97003 * 119.99990 * 334.78723 * 18 16 2 41 41 H 1.08008 * 126.22093 * 0.02838 * 22 21 19 42 42 H 1.08004 * 124.76476 * 179.97438 * 25 24 23 43 43 H 1.08000 * 122.16822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7202 -1.2501 5 6 3.5720 -0.6888 -1.2638 6 7 4.0680 -1.2496 0.0004 7 6 4.9760 -2.2745 0.0004 8 1 5.0088 -2.9669 0.8286 9 6 5.8544 -2.4236 -1.0640 10 7 6.0609 -1.4216 -1.8922 11 14 6.7434 -4.0463 -1.3213 12 1 6.3410 -5.0046 -0.2607 13 1 6.3862 -4.6008 -2.6517 14 1 8.2100 -3.8230 -1.2556 15 6 3.5714 -0.6894 1.2646 16 6 2.0399 -0.7209 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4459 19 6 1.3983 -0.7320 3.6007 20 8 1.7103 -1.9076 3.6499 21 6 0.8846 -0.0601 4.7963 22 6 0.7011 -0.6406 6.0288 23 6 0.1963 0.3482 6.8925 24 16 -0.3322 0.6140 8.5503 25 6 -0.7022 2.2954 8.2054 26 6 -0.4331 2.5794 6.9366 27 6 0.0692 1.5213 6.1722 28 7 0.4966 1.2610 4.8755 29 1 0.5185 1.9018 4.1476 30 1 -0.3633 0.5143 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6584 -0.2198 -2.1398 34 1 1.6980 -1.7550 -1.2393 35 1 3.9154 0.3406 -1.3666 36 1 3.9423 -1.2847 -2.0981 37 1 6.6745 -1.5259 -2.6362 38 1 3.9147 0.3400 1.3681 39 1 3.9411 -1.2856 2.0988 40 1 1.2803 0.8890 2.4077 41 1 0.9092 -1.6683 6.2876 42 1 -1.0946 2.9997 8.9242 43 1 -0.5918 3.5638 6.5216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968505206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:53 Heat of formation + Delta-G solvation = 51.841235 kcal Electronic energy + Delta-G solvation = -26037.397902 eV Core-core repulsion = 22403.256522 eV Total energy + Delta-G solvation = -3634.141380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.51912 -39.54313 -37.65067 -35.50089 -34.58435 -33.12274 -31.17784 -31.09360 -29.49781 -28.17753 -27.21010 -24.27518 -23.75450 -22.97367 -21.67404 -21.11751 -20.57905 -20.09570 -19.36947 -18.59111 -16.85583 -16.59788 -15.79535 -15.65763 -15.38138 -14.79886 -14.46690 -14.35458 -14.18993 -13.77137 -13.74887 -13.53530 -13.39472 -13.22746 -13.02558 -12.50668 -12.10932 -12.08624 -11.82779 -11.70341 -11.55311 -11.08373 -11.07822 -10.82278 -10.71670 -10.31120 -10.19486 -10.14997 -9.95450 -9.90407 -9.70025 -9.61176 -8.94375 -8.44501 -8.28801 -7.89676 -6.70077 -5.79791 -3.21853 0.54733 1.30370 1.80887 1.83619 2.51217 2.61673 3.19284 3.35718 3.39002 3.47049 3.51349 4.49344 4.51091 4.70652 4.74807 5.03796 5.08816 5.21294 5.26937 5.32856 5.42620 5.51166 5.55730 5.70565 5.75102 5.82638 5.88475 5.98406 6.09787 6.15645 6.22361 6.23805 6.39094 6.49130 6.56864 6.59802 6.67776 6.77959 6.92528 7.05150 7.32157 7.57042 7.61920 7.82982 8.22334 8.44339 9.20733 9.82751 10.37938 11.29008 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.002588 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.169620 B =10818.100087 C =11660.480669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.250 4.250 8 H 0.068 0.932 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.902 3.098 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.290 1.290 15 C 0.141 3.859 16 C 0.133 3.867 17 H 0.090 0.910 18 N -0.717 5.717 19 C 0.581 3.419 20 O -0.515 6.515 21 C 0.018 3.982 22 C -0.076 4.076 23 C -0.217 4.217 24 S 0.129 5.871 25 C -0.192 4.192 26 C -0.113 4.113 27 C 0.061 3.939 28 N -0.541 5.541 29 H 0.418 0.582 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.019 0.981 36 H 0.090 0.910 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.060 0.940 40 H 0.388 0.612 41 H 0.157 0.843 42 H 0.172 0.828 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 10.631 14.888 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.309 5.309 7 C -0.379 4.379 8 H 0.086 0.914 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.732 3.268 12 H -0.201 1.201 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.013 3.987 16 C 0.028 3.972 17 H 0.109 0.891 18 N -0.367 5.367 19 C 0.367 3.633 20 O -0.390 6.390 21 C -0.097 4.097 22 C -0.107 4.107 23 C -0.337 4.337 24 S 0.388 5.612 25 C -0.328 4.328 26 C -0.147 4.147 27 C -0.058 4.058 28 N -0.144 5.144 29 H 0.256 0.744 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.078 0.922 40 H 0.221 0.779 41 H 0.175 0.825 42 H 0.189 0.811 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.129 8.942 15.888 24.342 hybrid contribution 0.473 1.115 -1.840 2.203 sum -15.656 10.056 14.049 23.315 Atomic orbital electron populations 1.21858 0.95979 1.01716 1.00604 1.21313 0.94538 0.99643 0.95521 0.91532 1.22250 1.00700 0.99623 0.94734 1.20859 0.87279 0.97334 0.90432 1.44000 1.48103 1.39779 0.99040 1.19271 1.09667 1.02763 1.06228 0.91429 1.25023 0.97209 0.97560 0.99840 1.70049 1.37826 1.29002 1.17996 0.86215 0.79072 0.83700 0.77822 1.20095 1.21525 1.21736 1.21193 0.89876 0.96703 0.90889 1.21862 0.96889 0.97061 0.81398 0.89147 1.46042 1.66175 1.13699 1.10739 1.16924 0.78500 0.86384 0.81523 1.90918 1.49434 1.14834 1.83765 1.20530 1.09082 0.83462 0.96648 1.20437 1.02215 0.98897 0.89118 1.22689 1.14228 0.98219 0.98566 1.83934 1.66571 1.05156 1.05506 1.25218 1.08215 1.00007 0.99360 1.18887 1.04332 0.98376 0.93079 1.18337 1.06765 0.95316 0.85359 1.41972 1.53294 1.09974 1.09184 0.74363 0.93683 0.92864 0.92751 0.92649 0.92299 0.96336 0.89142 0.93708 0.96552 0.92180 0.77869 0.82530 0.81109 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.39 2.27 -90.58 -0.21 -1.59 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 5 C 0.17 3.85 5.31 -3.71 -0.02 3.83 16 6 N -0.59 -14.69 2.99 -172.32 -0.52 -15.20 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.13 11.19 55.49 0.62 -25.51 16 11 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.14 3.02 6.09 -3.71 -0.02 3.00 16 16 C 0.13 2.29 2.06 -67.81 -0.14 2.15 16 17 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 18 N -0.72 -9.81 4.36 -55.06 -0.24 -10.05 16 19 C 0.58 8.94 7.74 -12.95 -0.10 8.84 16 20 O -0.51 -10.09 16.52 5.16 0.09 -10.00 16 21 C 0.02 0.23 7.01 -82.10 -0.58 -0.35 16 22 C -0.08 -1.00 10.60 -38.95 -0.41 -1.41 16 23 C -0.22 -2.53 7.26 -38.66 -0.28 -2.82 16 24 S 0.13 1.16 23.31 -107.50 -2.51 -1.34 16 25 C -0.19 -1.39 11.13 28.86 0.32 -1.07 16 26 C -0.11 -0.91 10.16 -40.85 -0.42 -1.33 16 27 C 0.06 0.63 7.67 -84.00 -0.64 -0.01 16 28 N -0.54 -5.37 6.14 -7.34 -0.05 -5.41 16 29 H 0.42 2.86 8.14 -40.82 -0.33 2.53 16 30 H 0.04 0.48 7.36 -51.93 -0.38 0.10 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.39 7.93 -51.93 -0.41 0.98 16 40 H 0.39 3.99 7.40 -40.82 -0.30 3.69 16 41 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 42 H 0.17 0.73 8.06 -52.48 -0.42 0.30 16 43 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 363.43 15.07 5.48 5.48 Total: -1.00 -32.67 363.43 -10.60 -43.27 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.91 Total: 3.70 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -2.53 Total: -1.90 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.18 Total: -56.18 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.51 Total: -1.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.67 -10.60 -43.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.110 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds