Wall clock time and date at job start Tue Mar 31 2020 18:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.44787 * 2 1 4 4 C 1.53038 * 109.48467 * 240.05263 * 2 1 3 5 5 C 1.53194 * 109.33738 * 178.64741 * 4 2 1 6 6 N 1.46926 * 108.77811 * 54.62208 * 5 4 2 7 7 C 1.36927 * 120.63341 * 126.41310 * 6 5 4 8 8 H 1.07999 * 120.00084 * 207.65661 * 7 6 5 9 9 C 1.38811 * 120.00289 * 27.66092 * 7 6 5 10 10 N 1.31621 * 119.99938 * 17.37209 * 9 7 6 11 11 Si 1.86807 * 120.00194 * 197.37981 * 9 7 6 12 12 H 1.48498 * 109.46931 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46933 * 119.99689 * 11 9 7 14 14 H 1.48498 * 109.46848 * 239.99815 * 11 9 7 15 15 C 1.46926 * 118.73486 * 306.39230 * 6 5 4 16 16 C 1.53042 * 109.45959 * 119.97144 * 2 1 3 17 17 H 1.08991 * 109.50077 * 61.39769 * 16 2 1 18 18 N 1.46509 * 109.49235 * 301.33678 * 16 2 1 19 19 C 1.34778 * 119.99724 * 155.07017 * 18 16 2 20 20 O 1.21731 * 119.99948 * 359.97438 * 19 18 16 21 21 C 1.46448 * 119.99932 * 179.97438 * 19 18 16 22 22 C 1.37462 * 125.80802 * 179.68450 * 21 19 18 23 23 C 1.40661 * 107.55722 * 179.87942 * 22 21 19 24 24 S 1.76015 * 142.39568 * 180.02562 * 23 22 21 25 25 C 1.75587 * 91.31125 * 180.34350 * 24 23 22 26 26 C 1.32770 * 110.47583 * 0.02562 * 25 24 23 27 27 C 1.38246 * 108.03329 * 0.39057 * 23 22 21 28 28 N 1.37920 * 125.80754 * 0.02562 * 21 19 18 29 29 H 0.97008 * 125.68304 * 359.97438 * 28 21 19 30 30 H 1.08993 * 109.47124 * 300.03149 * 1 2 3 31 31 H 1.09001 * 109.47043 * 60.03605 * 1 2 3 32 32 H 1.09007 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.49797 * 58.68303 * 4 2 1 34 34 H 1.09003 * 109.50154 * 298.61008 * 4 2 1 35 35 H 1.08998 * 109.58616 * 294.83094 * 5 4 2 36 36 H 1.09006 * 109.58667 * 174.40646 * 5 4 2 37 37 H 0.97000 * 119.99786 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.59012 * 293.82241 * 15 6 5 39 39 H 1.09000 * 109.59033 * 173.39706 * 15 6 5 40 40 H 0.97003 * 119.99990 * 334.78723 * 18 16 2 41 41 H 1.08008 * 126.22093 * 0.02838 * 22 21 19 42 42 H 1.08004 * 124.76476 * 179.97438 * 25 24 23 43 43 H 1.08000 * 122.16822 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7202 -1.2501 5 6 3.5720 -0.6888 -1.2638 6 7 4.0680 -1.2496 0.0004 7 6 4.9760 -2.2745 0.0004 8 1 5.0088 -2.9669 0.8286 9 6 5.8544 -2.4236 -1.0640 10 7 6.0609 -1.4216 -1.8922 11 14 6.7434 -4.0463 -1.3213 12 1 6.3410 -5.0046 -0.2607 13 1 6.3862 -4.6008 -2.6517 14 1 8.2100 -3.8230 -1.2556 15 6 3.5714 -0.6894 1.2646 16 6 2.0399 -0.7209 1.2500 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4459 19 6 1.3983 -0.7320 3.6007 20 8 1.7103 -1.9076 3.6499 21 6 0.8846 -0.0601 4.7963 22 6 0.7011 -0.6406 6.0288 23 6 0.1963 0.3482 6.8925 24 16 -0.3322 0.6140 8.5503 25 6 -0.7022 2.2954 8.2054 26 6 -0.4331 2.5794 6.9366 27 6 0.0692 1.5213 6.1722 28 7 0.4966 1.2610 4.8755 29 1 0.5185 1.9018 4.1476 30 1 -0.3633 0.5143 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6584 -0.2198 -2.1398 34 1 1.6980 -1.7550 -1.2393 35 1 3.9154 0.3406 -1.3666 36 1 3.9423 -1.2847 -2.0981 37 1 6.6745 -1.5259 -2.6362 38 1 3.9147 0.3400 1.3681 39 1 3.9411 -1.2856 2.0988 40 1 1.2803 0.8890 2.4077 41 1 0.9092 -1.6683 6.2876 42 1 -1.0946 2.9997 8.9242 43 1 -0.5918 3.5638 6.5216 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968505206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:52 Heat of formation + Delta-G solvation = 30.740777 kcal Electronic energy + Delta-G solvation = -26038.312886 eV Core-core repulsion = 22403.256522 eV Total energy + Delta-G solvation = -3635.056364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42482 -40.83685 -39.14610 -36.30866 -36.20402 -34.57965 -33.06193 -32.02792 -30.94080 -29.35887 -28.67116 -25.98738 -24.90210 -23.97359 -22.97120 -22.68112 -21.48833 -21.43818 -20.56271 -19.60964 -18.75472 -17.55826 -17.26612 -16.74428 -16.46770 -16.38328 -15.70570 -15.58981 -15.40089 -15.16023 -15.01849 -14.91240 -14.69291 -14.50676 -14.19001 -13.86676 -13.60077 -13.24106 -13.16308 -12.82177 -12.77449 -12.71055 -12.53999 -12.32436 -12.05563 -11.97112 -11.74121 -11.72785 -11.56376 -11.30966 -11.16296 -10.77505 -10.63850 -10.26020 -9.12012 -8.72953 -8.64911 -7.93158 -5.38266 -0.25432 0.58649 0.85096 1.17402 1.42153 1.44091 1.55628 1.72071 1.79119 2.04084 2.20712 2.48727 3.21189 3.59292 3.69054 3.80630 3.83617 3.96695 3.99662 4.06833 4.37983 4.41023 4.47592 4.54603 4.62197 4.73144 4.77117 4.87456 4.91515 4.95378 5.00582 5.05571 5.09187 5.11909 5.17942 5.36720 5.41403 5.42399 5.50154 5.56359 5.61137 5.74957 6.28988 6.34395 6.47115 7.04266 7.11009 7.79592 8.29185 9.12695 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020209 B = 0.002588 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.169620 B =10818.100087 C =11660.480669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.267 4.267 8 H 0.053 0.947 9 C -0.043 4.043 10 N -0.928 5.928 11 Si 0.964 3.036 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.288 1.288 15 C 0.143 3.857 16 C 0.151 3.849 17 H 0.061 0.939 18 N -0.699 5.699 19 C 0.585 3.415 20 O -0.567 6.567 21 C 0.000 4.000 22 C -0.088 4.088 23 C -0.253 4.253 24 S 0.125 5.875 25 C -0.168 4.168 26 C -0.126 4.126 27 C 0.073 3.927 28 N -0.527 5.527 29 H 0.433 0.567 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.006 0.994 36 H 0.055 0.945 37 H 0.253 0.747 38 H 0.022 0.978 39 H 0.030 0.970 40 H 0.410 0.590 41 H 0.146 0.854 42 H 0.208 0.792 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.759 13.378 15.845 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.397 4.397 8 H 0.071 0.929 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.215 1.215 15 C 0.016 3.984 16 C 0.044 3.956 17 H 0.079 0.921 18 N -0.350 5.350 19 C 0.372 3.628 20 O -0.445 6.445 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.373 4.373 24 S 0.384 5.616 25 C -0.304 4.304 26 C -0.159 4.159 27 C -0.047 4.047 28 N -0.131 5.131 29 H 0.275 0.725 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.065 0.935 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.040 0.960 39 H 0.049 0.951 40 H 0.247 0.753 41 H 0.164 0.836 42 H 0.225 0.775 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -18.511 11.749 16.833 27.641 hybrid contribution 1.192 0.337 -1.965 2.323 sum -17.319 12.086 14.869 25.828 Atomic orbital electron populations 1.21781 0.92853 1.01814 1.02839 1.21240 0.96947 0.99431 0.92495 0.89892 1.22082 0.96618 0.99916 0.97616 1.20734 0.90711 0.95454 0.88485 1.44213 1.48231 1.39713 1.00795 1.19416 1.10527 1.03620 1.06143 0.92946 1.25705 0.98114 1.00470 0.99638 1.70168 1.38445 1.30483 1.18313 0.85261 0.77795 0.80034 0.77698 1.19923 1.20919 1.21481 1.21225 0.92792 0.95847 0.88531 1.21341 0.93771 0.96555 0.83888 0.92072 1.45710 1.65409 1.14561 1.09319 1.17217 0.77488 0.85801 0.82263 1.90890 1.51772 1.17234 1.84626 1.19939 1.11244 0.84899 0.95414 1.20520 1.02392 0.99063 0.89983 1.22919 1.15670 0.98434 1.00233 1.83988 1.66489 1.07110 1.04029 1.25737 1.05903 0.99008 0.99729 1.19209 1.04584 0.99074 0.93031 1.18826 1.05177 0.95628 0.85115 1.41810 1.52522 1.08997 1.09779 0.72530 0.91418 0.90685 0.93771 0.89720 0.93482 0.97619 0.92631 0.93830 0.96048 0.95118 0.75322 0.83619 0.77474 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.08 -2.35 2.27 -10.77 -0.02 -2.38 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -4.33 5.36 30.67 0.16 -4.17 16 5 C 0.17 8.12 5.31 86.36 0.46 8.58 16 6 N -0.61 -31.56 2.99 -699.10 -2.09 -33.65 16 7 C -0.27 -15.58 9.58 84.03 0.81 -14.77 16 8 H 0.05 3.14 7.89 -2.91 -0.02 3.12 16 9 C -0.04 -2.50 4.91 84.86 0.42 -2.08 16 10 N -0.93 -55.19 11.19 21.65 0.24 -54.94 16 11 Si 0.96 46.54 29.59 68.60 2.03 48.57 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 C 0.14 6.34 6.09 86.36 0.53 6.87 16 16 C 0.15 5.22 2.06 45.07 0.09 5.31 16 17 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 18 N -0.70 -18.68 4.36 -446.32 -1.95 -20.62 16 19 C 0.58 18.38 7.74 86.38 0.67 19.05 16 20 O -0.57 -23.57 16.52 -4.45 -0.07 -23.64 16 21 C 0.00 -0.01 7.01 40.14 0.28 0.28 16 22 C -0.09 -2.38 10.60 22.68 0.24 -2.14 16 23 C -0.25 -5.69 7.26 22.86 0.17 -5.53 16 24 S 0.12 2.03 23.31 -56.49 -1.32 0.71 16 25 C -0.17 -1.75 11.13 66.64 0.74 -1.01 16 26 C -0.13 -1.52 10.16 21.49 0.22 -1.30 16 27 C 0.07 1.35 7.67 38.40 0.29 1.64 16 28 N -0.53 -9.39 6.14 -177.15 -1.09 -10.47 16 29 H 0.43 4.62 8.14 -92.70 -0.75 3.87 16 30 H 0.07 1.16 7.36 -2.39 -0.02 1.15 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.06 3.01 6.04 -2.38 -0.01 2.99 16 37 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.03 1.50 7.93 -2.39 -0.02 1.48 16 40 H 0.41 7.43 7.40 -92.71 -0.69 6.74 16 41 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.21 0.62 8.06 -2.91 -0.02 0.59 16 43 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -76.00 363.43 1.07 -74.94 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -0.39 Total: 13.01 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.70 Total: 6.11 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -4.88 Total: -119.70 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.07 Total: -23.64 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.32 Total: 0.71 kcal Total: -76.00 1.07 -74.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968505206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.676 kcal (2) G-P(sol) polarization free energy of solvation -76.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds