Wall clock time and date at job start Tue Mar 31 2020 18:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.44954 * 2 1 4 4 C 1.53116 * 109.50340 * 119.97734 * 2 1 3 5 5 C 1.53190 * 109.32801 * 181.37005 * 4 2 1 6 6 N 1.46921 * 108.77662 * 305.36445 * 5 4 2 7 7 C 1.36945 * 120.63254 * 233.59044 * 6 5 4 8 8 H 1.07999 * 119.99916 * 27.69633 * 7 6 5 9 9 C 1.38808 * 120.00229 * 207.69708 * 7 6 5 10 10 N 1.31619 * 119.99752 * 17.35669 * 9 7 6 11 11 Si 1.86802 * 120.00065 * 197.35401 * 9 7 6 12 12 H 1.48495 * 109.47106 * 60.00303 * 11 9 7 13 13 H 1.48504 * 109.46907 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47018 * 299.99823 * 11 9 7 15 15 C 1.46921 * 118.74166 * 53.60912 * 6 5 4 16 16 C 1.53035 * 109.46107 * 240.02705 * 2 1 3 17 17 H 1.09005 * 109.49788 * 58.63742 * 16 2 1 18 18 N 1.46492 * 109.50232 * 298.57042 * 16 2 1 19 19 C 1.34778 * 120.00314 * 155.06585 * 18 16 2 20 20 O 1.21732 * 119.99733 * 359.97438 * 19 18 16 21 21 C 1.46414 * 119.99898 * 180.02562 * 19 18 16 22 22 C 1.35782 * 124.95727 * 179.97438 * 21 19 18 23 23 C 1.38867 * 115.18614 * 180.26606 * 22 21 19 24 24 N 1.39744 * 139.91486 * 179.72166 * 23 22 21 25 25 H 0.97000 * 125.63263 * 359.96763 * 24 23 22 26 26 C 1.36217 * 108.73402 * 180.02562 * 24 23 22 27 27 C 1.34518 * 109.29293 * 359.49401 * 26 24 23 28 28 C 1.38251 * 113.39148 * 359.50987 * 23 22 21 29 29 S 1.75616 * 124.96046 * 359.97438 * 21 19 18 30 30 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47453 * 299.96805 * 1 2 3 32 32 H 1.09001 * 109.47245 * 59.97128 * 1 2 3 33 33 H 1.09000 * 109.48455 * 61.41408 * 4 2 1 34 34 H 1.09004 * 109.48594 * 301.32773 * 4 2 1 35 35 H 1.09002 * 109.58317 * 185.57878 * 5 4 2 36 36 H 1.08993 * 109.59149 * 65.15347 * 5 4 2 37 37 H 0.97007 * 119.99911 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.59144 * 186.60327 * 15 6 5 39 39 H 1.09002 * 109.58769 * 66.17975 * 15 6 5 40 40 H 0.97002 * 119.99948 * 335.06161 * 18 16 2 41 41 H 1.07996 * 122.40461 * 0.02562 * 22 21 19 42 42 H 1.07995 * 125.35344 * 179.97438 * 26 24 23 43 43 H 1.08003 * 126.07282 * 179.89625 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0411 -0.7212 1.2502 5 6 3.5726 -0.6889 1.2635 6 7 4.0684 -1.2490 -0.0010 7 6 4.9770 -2.2737 -0.0016 8 1 5.0106 -2.9661 0.8265 9 6 5.8548 -2.4223 -1.0666 10 7 6.0601 -1.4202 -1.8949 11 14 6.7448 -4.0443 -1.3241 12 1 5.7500 -5.1283 -1.5253 13 1 7.6175 -3.9455 -2.5216 14 1 7.5742 -4.3488 -0.1304 15 6 3.5713 -0.6887 -1.2649 16 6 2.0398 -0.7209 -1.2499 17 1 1.6568 -0.2212 -2.1398 18 7 1.5801 -2.1117 -1.2341 19 6 1.4528 -2.7927 -2.3902 20 8 1.7195 -2.2518 -3.4477 21 6 0.9928 -4.1826 -2.3744 22 6 0.8285 -4.9603 -3.4752 23 6 0.3760 -6.2493 -3.2259 24 7 0.0410 -7.4171 -3.9165 25 1 0.0795 -7.5355 -4.8784 26 6 -0.3497 -8.3612 -3.0157 27 6 -0.2688 -7.8509 -1.7737 28 6 0.1827 -6.5130 -1.8826 29 16 0.5731 -5.0872 -0.9288 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6990 -1.7560 1.2384 34 1 1.6589 -0.2212 2.1402 35 1 3.9433 -1.2850 2.0975 36 1 3.9156 0.3405 1.3666 37 1 6.6739 -1.5239 -2.6389 38 1 3.9412 -1.2845 -2.0994 39 1 3.9142 0.3408 -1.3681 40 1 1.3673 -2.5426 -0.3915 41 1 1.0312 -4.6009 -4.4732 42 1 -0.6666 -9.3644 -3.2596 43 1 -0.5157 -8.3662 -0.8571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968597245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:58 Heat of formation + Delta-G solvation = 55.993304 kcal Electronic energy + Delta-G solvation = -26972.491282 eV Core-core repulsion = 23338.529949 eV Total energy + Delta-G solvation = -3633.961333 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17567 -39.55421 -37.57301 -34.88074 -34.08592 -32.77687 -31.00326 -30.94251 -29.51028 -27.95957 -27.15694 -24.28293 -23.72342 -22.22991 -21.53228 -21.05435 -20.76636 -19.56453 -18.74487 -18.25530 -16.81108 -16.55321 -15.41476 -15.24212 -14.97576 -14.72017 -14.37173 -14.17559 -13.80028 -13.75941 -13.62127 -13.48642 -13.22638 -12.94628 -12.71653 -12.53426 -11.91543 -11.89689 -11.57372 -11.44335 -11.30784 -11.03759 -10.87103 -10.78433 -10.65928 -10.47098 -10.19708 -9.87974 -9.69232 -9.66174 -9.49943 -9.41553 -8.41164 -8.38774 -8.04059 -7.59802 -6.59871 -5.71384 -3.13640 0.70632 1.55920 2.10542 2.45942 2.66432 2.94912 3.43159 3.49602 3.51584 3.64493 3.83731 4.56038 4.82288 4.89687 5.05935 5.21937 5.27985 5.37546 5.42694 5.46375 5.48395 5.60635 5.78733 5.91749 5.96530 5.97268 6.02645 6.11030 6.18928 6.32678 6.40144 6.47026 6.48831 6.57968 6.68410 6.70853 6.78939 6.91516 7.02371 7.33886 7.40336 7.71875 7.86340 8.08340 8.52189 8.74728 9.27196 9.91567 10.46813 11.36608 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.004967 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.099421 B = 5635.549819 C = 7038.307262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.130 4.130 5 C 0.143 3.857 6 N -0.587 5.587 7 C -0.253 4.253 8 H 0.064 0.936 9 C 0.008 3.992 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.078 0.922 18 N -0.690 5.690 19 C 0.589 3.411 20 O -0.536 6.536 21 C -0.215 4.215 22 C -0.045 4.045 23 C 0.029 3.971 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.050 3.950 27 C -0.171 4.171 28 C -0.194 4.194 29 S 0.166 5.834 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.254 0.746 38 H 0.098 0.902 39 H 0.027 0.973 40 H 0.393 0.607 41 H 0.148 0.852 42 H 0.176 0.824 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 -8.726 0.593 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.170 4.170 5 C 0.016 3.984 6 N -0.310 5.310 7 C -0.382 4.382 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.724 3.276 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.209 1.209 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.096 0.904 18 N -0.339 5.339 19 C 0.374 3.626 20 O -0.416 6.416 21 C -0.335 4.335 22 C -0.081 4.081 23 C -0.085 4.085 24 N -0.160 5.160 25 H 0.255 0.745 26 C -0.083 4.083 27 C -0.200 4.200 28 C -0.316 4.316 29 S 0.429 5.571 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.064 0.936 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.229 0.771 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.727 -7.931 1.115 17.649 hybrid contribution 0.548 -1.608 -1.761 2.447 sum -15.179 -9.539 -0.646 17.939 Atomic orbital electron populations 1.21858 0.95951 1.01430 1.01020 1.21332 0.94648 0.99924 0.95438 0.90265 1.22111 0.99317 0.99404 0.96129 1.20930 0.90636 0.96550 0.90276 1.43973 1.48238 1.39613 0.99147 1.19038 1.09929 1.03087 1.06169 0.91872 1.24968 0.97194 0.97096 0.99839 1.69991 1.37499 1.28964 1.17745 0.86491 0.79372 0.84424 0.77285 1.20958 1.21686 1.20921 1.21217 0.86531 0.97854 0.91098 1.21856 0.99090 0.79917 0.97106 0.90385 1.45671 1.66480 1.14220 1.07576 1.16710 0.77791 0.83481 0.84654 1.90808 1.51240 1.68837 1.30681 1.23927 1.13418 0.99448 0.96738 1.19198 0.99490 0.89354 1.00080 1.18013 1.10172 0.89914 0.90406 1.41869 1.55896 1.09349 1.08891 0.74460 1.21797 1.03429 0.94700 0.88400 1.20098 1.10342 0.92170 0.97427 1.23205 1.11927 1.00317 0.96174 1.83727 1.66817 1.00548 1.06036 0.93043 0.93061 0.93034 0.92802 0.92655 0.92765 0.96382 0.93603 0.88413 0.95554 0.77127 0.83460 0.80733 0.83714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.05 37.15 0.34 -1.58 16 2 C -0.09 -1.50 2.48 -90.55 -0.22 -1.73 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 4 C -0.13 -2.09 5.20 -26.57 -0.14 -2.23 16 5 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 6 N -0.59 -14.38 2.91 -172.33 -0.50 -14.88 16 7 C -0.25 -6.92 9.59 -15.06 -0.14 -7.07 16 8 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 9 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 10 N -0.90 -26.85 11.19 55.49 0.62 -26.23 16 11 Si 0.89 22.63 29.59 -169.99 -5.03 17.60 16 12 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.16 3.87 4.91 -3.71 -0.02 3.85 16 16 C 0.13 2.45 2.24 -67.82 -0.15 2.30 16 17 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 18 N -0.69 -13.05 4.25 -55.08 -0.23 -13.28 16 19 C 0.59 11.96 7.74 -12.97 -0.10 11.86 16 20 O -0.54 -12.52 16.44 5.16 0.08 -12.43 16 21 C -0.21 -3.79 6.38 -37.17 -0.24 -4.03 16 22 C -0.05 -0.73 9.88 -40.23 -0.40 -1.13 16 23 C 0.03 0.41 7.67 -84.01 -0.64 -0.23 16 24 N -0.56 -5.66 6.21 -10.89 -0.07 -5.73 16 25 H 0.42 2.88 8.96 -40.82 -0.37 2.52 16 26 C 0.05 0.44 11.85 -16.92 -0.20 0.24 16 27 C -0.17 -1.91 10.85 -39.60 -0.43 -2.34 16 28 C -0.19 -2.78 7.31 -38.28 -0.28 -3.06 16 29 S 0.17 2.49 22.29 -107.50 -2.40 0.09 16 30 H 0.05 0.68 7.54 -51.93 -0.39 0.28 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.87 6.40 -51.93 -0.33 0.54 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.10 2.80 6.04 -51.93 -0.31 2.49 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.39 6.87 5.70 -40.82 -0.23 6.63 16 41 H 0.15 2.27 8.00 -52.49 -0.42 1.85 16 42 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -33.85 360.08 -10.63 -44.48 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -5.79 Total: 7.11 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.74 Total: -2.16 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.18 Total: -60.12 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.40 Total: 0.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.85 -10.63 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.475 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds