Wall clock time and date at job start Tue Mar 31 2020 18:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.44954 * 2 1 4 4 C 1.53116 * 109.50340 * 119.97734 * 2 1 3 5 5 C 1.53190 * 109.32801 * 181.37005 * 4 2 1 6 6 N 1.46921 * 108.77662 * 305.36445 * 5 4 2 7 7 C 1.36945 * 120.63254 * 233.59044 * 6 5 4 8 8 H 1.07999 * 119.99916 * 27.69633 * 7 6 5 9 9 C 1.38808 * 120.00229 * 207.69708 * 7 6 5 10 10 N 1.31619 * 119.99752 * 17.35669 * 9 7 6 11 11 Si 1.86802 * 120.00065 * 197.35401 * 9 7 6 12 12 H 1.48495 * 109.47106 * 60.00303 * 11 9 7 13 13 H 1.48504 * 109.46907 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47018 * 299.99823 * 11 9 7 15 15 C 1.46921 * 118.74166 * 53.60912 * 6 5 4 16 16 C 1.53035 * 109.46107 * 240.02705 * 2 1 3 17 17 H 1.09005 * 109.49788 * 58.63742 * 16 2 1 18 18 N 1.46492 * 109.50232 * 298.57042 * 16 2 1 19 19 C 1.34778 * 120.00314 * 155.06585 * 18 16 2 20 20 O 1.21732 * 119.99733 * 359.97438 * 19 18 16 21 21 C 1.46414 * 119.99898 * 180.02562 * 19 18 16 22 22 C 1.35782 * 124.95727 * 179.97438 * 21 19 18 23 23 C 1.38867 * 115.18614 * 180.26606 * 22 21 19 24 24 N 1.39744 * 139.91486 * 179.72166 * 23 22 21 25 25 H 0.97000 * 125.63263 * 359.96763 * 24 23 22 26 26 C 1.36217 * 108.73402 * 180.02562 * 24 23 22 27 27 C 1.34518 * 109.29293 * 359.49401 * 26 24 23 28 28 C 1.38251 * 113.39148 * 359.50987 * 23 22 21 29 29 S 1.75616 * 124.96046 * 359.97438 * 21 19 18 30 30 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47453 * 299.96805 * 1 2 3 32 32 H 1.09001 * 109.47245 * 59.97128 * 1 2 3 33 33 H 1.09000 * 109.48455 * 61.41408 * 4 2 1 34 34 H 1.09004 * 109.48594 * 301.32773 * 4 2 1 35 35 H 1.09002 * 109.58317 * 185.57878 * 5 4 2 36 36 H 1.08993 * 109.59149 * 65.15347 * 5 4 2 37 37 H 0.97007 * 119.99911 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.59144 * 186.60327 * 15 6 5 39 39 H 1.09002 * 109.58769 * 66.17975 * 15 6 5 40 40 H 0.97002 * 119.99948 * 335.06161 * 18 16 2 41 41 H 1.07996 * 122.40461 * 0.02562 * 22 21 19 42 42 H 1.07995 * 125.35344 * 179.97438 * 26 24 23 43 43 H 1.08003 * 126.07282 * 179.89625 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0411 -0.7212 1.2502 5 6 3.5726 -0.6889 1.2635 6 7 4.0684 -1.2490 -0.0010 7 6 4.9770 -2.2737 -0.0016 8 1 5.0106 -2.9661 0.8265 9 6 5.8548 -2.4223 -1.0666 10 7 6.0601 -1.4202 -1.8949 11 14 6.7448 -4.0443 -1.3241 12 1 5.7500 -5.1283 -1.5253 13 1 7.6175 -3.9455 -2.5216 14 1 7.5742 -4.3488 -0.1304 15 6 3.5713 -0.6887 -1.2649 16 6 2.0398 -0.7209 -1.2499 17 1 1.6568 -0.2212 -2.1398 18 7 1.5801 -2.1117 -1.2341 19 6 1.4528 -2.7927 -2.3902 20 8 1.7195 -2.2518 -3.4477 21 6 0.9928 -4.1826 -2.3744 22 6 0.8285 -4.9603 -3.4752 23 6 0.3760 -6.2493 -3.2259 24 7 0.0410 -7.4171 -3.9165 25 1 0.0795 -7.5355 -4.8784 26 6 -0.3497 -8.3612 -3.0157 27 6 -0.2688 -7.8509 -1.7737 28 6 0.1827 -6.5130 -1.8826 29 16 0.5731 -5.0872 -0.9288 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6990 -1.7560 1.2384 34 1 1.6589 -0.2212 2.1402 35 1 3.9433 -1.2850 2.0975 36 1 3.9156 0.3405 1.3666 37 1 6.6739 -1.5239 -2.6389 38 1 3.9412 -1.2845 -2.0994 39 1 3.9142 0.3408 -1.3681 40 1 1.3673 -2.5426 -0.3915 41 1 1.0312 -4.6009 -4.4732 42 1 -0.6666 -9.3644 -3.2596 43 1 -0.5157 -8.3662 -0.8571 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968597245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:57 Heat of formation + Delta-G solvation = 33.808177 kcal Electronic energy + Delta-G solvation = -26973.453301 eV Core-core repulsion = 23338.529949 eV Total energy + Delta-G solvation = -3634.923352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11765 -41.11703 -39.15809 -36.09383 -35.87917 -34.37318 -32.83968 -31.86823 -31.10353 -29.23275 -28.69971 -25.96292 -25.12649 -23.72592 -22.80675 -22.65385 -21.70633 -20.84865 -20.31686 -19.41644 -18.59474 -17.95322 -16.93523 -16.72857 -16.48659 -16.12058 -15.76151 -15.59473 -15.42807 -15.14469 -14.96930 -14.73280 -14.60956 -14.36663 -14.10409 -13.66042 -13.58459 -13.14979 -13.02988 -12.97188 -12.72491 -12.63398 -12.54657 -12.45114 -12.27160 -11.98938 -11.93062 -11.57159 -11.34121 -11.09253 -11.07174 -10.66190 -10.53288 -10.04301 -9.12698 -8.65152 -8.60920 -7.86303 -5.30001 -0.48280 0.43153 0.96507 1.37509 1.40669 1.43020 1.46823 1.73353 1.97064 2.23112 2.42871 2.48423 3.29575 3.68287 3.75771 3.88721 3.97402 3.99013 4.12579 4.16381 4.23320 4.51231 4.54902 4.67047 4.70855 4.72551 4.85821 4.89509 4.96091 4.97308 5.06983 5.08695 5.17037 5.23429 5.26856 5.46349 5.50510 5.56442 5.59730 5.68818 5.71449 5.78896 6.39460 6.55184 6.61651 7.14767 7.21479 7.88393 8.38688 9.18629 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.010725 B = 0.004967 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.099421 B = 5635.549819 C = 7038.307262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.083 0.917 4 C -0.118 4.118 5 C 0.136 3.864 6 N -0.601 5.601 7 C -0.249 4.249 8 H 0.069 0.931 9 C -0.049 4.049 10 N -0.933 5.933 11 Si 0.949 3.051 12 H -0.286 1.286 13 H -0.299 1.299 14 H -0.267 1.267 15 C 0.171 3.829 16 C 0.135 3.865 17 H 0.068 0.932 18 N -0.682 5.682 19 C 0.583 3.417 20 O -0.583 6.583 21 C -0.265 4.265 22 C -0.034 4.034 23 C -0.006 4.006 24 N -0.546 5.546 25 H 0.434 0.566 26 C 0.091 3.909 27 C -0.198 4.198 28 C -0.198 4.198 29 S 0.174 5.826 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.017 0.983 37 H 0.245 0.755 38 H 0.048 0.952 39 H 0.002 0.998 40 H 0.402 0.598 41 H 0.141 0.859 42 H 0.231 0.769 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.656 -11.609 2.257 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 H 0.101 0.899 4 C -0.157 4.157 5 C 0.011 3.989 6 N -0.324 5.324 7 C -0.379 4.379 8 H 0.087 0.913 9 C -0.244 4.244 10 N -0.579 5.579 11 Si 0.778 3.222 12 H -0.212 1.212 13 H -0.226 1.226 14 H -0.192 1.192 15 C 0.043 3.957 16 C 0.029 3.971 17 H 0.086 0.914 18 N -0.331 5.331 19 C 0.371 3.629 20 O -0.466 6.466 21 C -0.385 4.385 22 C -0.070 4.070 23 C -0.119 4.119 24 N -0.149 5.149 25 H 0.275 0.725 26 C -0.044 4.044 27 C -0.227 4.227 28 C -0.321 4.321 29 S 0.438 5.562 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.239 0.761 41 H 0.159 0.841 42 H 0.247 0.753 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -18.332 -10.805 2.826 21.466 hybrid contribution 1.282 -0.884 -2.298 2.776 sum -17.050 -11.689 0.528 20.679 Atomic orbital electron populations 1.21775 0.93078 1.01981 1.02527 1.21308 0.96895 0.99340 0.93142 0.89903 1.22001 0.95837 1.00176 0.97691 1.21152 0.93524 0.96107 0.88102 1.44171 1.48050 1.39500 1.00694 1.19381 1.09256 1.03562 1.05707 0.91332 1.25650 0.98800 0.99644 1.00305 1.70159 1.38688 1.30720 1.18330 0.85606 0.78288 0.81083 0.77243 1.21245 1.22572 1.19215 1.20885 0.89796 0.95251 0.89727 1.21599 0.95547 0.80918 0.99063 0.91428 1.45565 1.65924 1.13917 1.07735 1.17174 0.76925 0.84605 0.84224 1.90760 1.53441 1.70249 1.32123 1.23642 1.17306 0.98718 0.98805 1.19320 0.97864 0.90364 0.99498 1.17891 1.12340 0.90463 0.91241 1.42024 1.54596 1.08147 1.10107 0.72543 1.22732 0.98841 0.95730 0.87071 1.20576 1.11561 0.90933 0.99633 1.23648 1.11172 1.01238 0.95995 1.83431 1.67017 1.00930 1.04866 0.92977 0.90161 0.92955 0.92565 0.88661 0.92383 0.96469 0.94630 0.93360 0.97993 0.76144 0.84101 0.75297 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.05 71.98 0.65 -2.59 16 2 C -0.09 -2.68 2.48 -10.75 -0.03 -2.71 16 3 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.12 -3.52 5.20 30.70 0.16 -3.36 16 5 C 0.14 5.36 6.52 86.36 0.56 5.93 16 6 N -0.60 -30.17 2.91 -699.12 -2.04 -32.21 16 7 C -0.25 -13.92 9.59 84.03 0.81 -13.12 16 8 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 9 C -0.05 -2.86 4.91 84.86 0.42 -2.45 16 10 N -0.93 -58.85 11.19 21.65 0.24 -58.60 16 11 Si 0.95 47.91 29.59 68.60 2.03 49.94 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 13 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 14 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 15 C 0.17 8.75 4.91 86.36 0.42 9.17 16 16 C 0.13 5.43 2.24 45.07 0.10 5.53 16 17 H 0.07 2.86 7.58 -2.38 -0.02 2.84 16 18 N -0.68 -26.67 4.25 -446.38 -1.90 -28.56 16 19 C 0.58 25.11 7.74 86.37 0.67 25.78 16 20 O -0.58 -29.36 16.44 -4.45 -0.07 -29.43 16 21 C -0.26 -9.73 6.38 23.83 0.15 -9.58 16 22 C -0.03 -1.13 9.88 21.85 0.22 -0.91 16 23 C -0.01 -0.17 7.67 38.03 0.29 0.12 16 24 N -0.55 -9.24 6.21 -188.38 -1.17 -10.41 16 25 H 0.43 4.51 8.96 -92.71 -0.83 3.68 16 26 C 0.09 1.14 11.85 83.16 0.99 2.12 16 27 C -0.20 -3.67 10.85 22.25 0.24 -3.43 16 28 C -0.20 -5.31 7.31 23.11 0.17 -5.14 16 29 S 0.17 5.19 22.29 -56.49 -1.26 3.93 16 30 H 0.05 1.25 7.54 -2.39 -0.02 1.23 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.68 6.40 -2.39 -0.02 1.66 16 34 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 36 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.24 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.05 2.97 6.04 -2.39 -0.01 2.96 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.40 14.11 5.70 -92.71 -0.53 13.58 16 41 H 0.14 4.65 8.00 -2.91 -0.02 4.63 16 42 H 0.23 0.34 8.06 -2.91 -0.02 0.32 16 43 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -79.98 360.08 1.35 -78.62 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.30 Total: 21.35 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.82 Total: 5.36 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -4.86 Total: -129.78 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.07 Total: -29.43 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 16 Polarization: 5.19 SS G_CDS: -1.26 Total: 3.93 kcal Total: -79.98 1.35 -78.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.432 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds