Wall clock time and date at job start Tue Mar 31 2020 18:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.45707 * 2 1 4 4 C 1.53081 * 109.45003 * 119.81036 * 2 1 3 5 5 C 1.53190 * 109.29209 * 181.24476 * 4 2 1 6 6 N 1.46921 * 108.89311 * 305.57883 * 5 4 2 7 7 C 1.36940 * 120.63187 * 233.51481 * 6 5 4 8 8 H 1.08001 * 120.00319 * 152.61971 * 7 6 5 9 9 C 1.38813 * 119.99903 * 332.62203 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46923 * 118.74178 * 53.54201 * 6 5 4 16 16 C 1.53035 * 109.46080 * 240.02215 * 2 1 3 17 17 H 1.08999 * 109.49849 * 298.56276 * 16 2 1 18 18 N 1.46496 * 109.52228 * 58.64925 * 16 2 1 19 19 C 1.34782 * 119.99541 * 204.85494 * 18 16 2 20 20 O 1.21728 * 120.00099 * 359.97438 * 19 18 16 21 21 C 1.46413 * 119.99650 * 179.97438 * 19 18 16 22 22 C 1.35779 * 124.95773 * 179.97438 * 21 19 18 23 23 C 1.38875 * 115.18480 * 180.02562 * 22 21 19 24 24 N 1.39746 * 139.91410 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.63008 * 359.97418 * 24 23 22 26 26 C 1.36213 * 108.73582 * 179.97438 * 24 23 22 27 27 C 1.34514 * 109.29523 * 359.97438 * 26 24 23 28 28 C 1.38235 * 113.39590 * 0.02562 * 23 22 21 29 29 S 1.75618 * 124.96059 * 359.69647 * 21 19 18 30 30 H 1.08997 * 109.46610 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47206 * 299.97679 * 1 2 3 32 32 H 1.08994 * 109.47041 * 59.97660 * 1 2 3 33 33 H 1.08992 * 109.38800 * 61.36895 * 4 2 1 34 34 H 1.09002 * 109.61927 * 301.26174 * 4 2 1 35 35 H 1.08999 * 109.58729 * 185.71870 * 5 4 2 36 36 H 1.09004 * 109.58886 * 65.43758 * 5 4 2 37 37 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.59094 * 66.17180 * 15 6 5 39 39 H 1.08996 * 109.58998 * 186.60934 * 15 6 5 40 40 H 0.96997 * 120.00610 * 24.85488 * 18 16 2 41 41 H 1.07997 * 122.40864 * 359.97438 * 22 21 19 42 42 H 1.07995 * 125.35491 * 179.97438 * 26 24 23 43 43 H 1.07995 * 126.07507 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7176 1.2524 5 6 3.5714 -0.6883 1.2645 6 7 4.0679 -1.2488 0.0004 7 6 4.9765 -2.2733 0.0006 8 1 5.0129 -2.9630 -0.8297 9 6 5.8508 -2.4254 1.0680 10 7 6.4276 -3.5883 1.2857 11 14 6.2086 -0.9798 2.1956 12 1 5.2791 -1.0130 3.3532 13 1 7.6089 -1.0664 2.6824 14 1 6.0223 0.2895 1.4475 15 6 3.5715 -0.6888 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6980 -1.7559 -1.2379 18 7 1.5257 -0.0498 -2.4462 19 6 1.4003 -0.7335 -3.6010 20 8 1.7148 -1.9084 -3.6500 21 6 0.8859 -0.0628 -4.7965 22 6 0.7192 -0.6523 -6.0082 23 6 0.2162 0.1750 -7.0038 24 7 -0.1402 0.1281 -8.3542 25 1 -0.0795 -0.6517 -8.9279 26 6 -0.5869 1.3582 -8.7318 27 6 -0.5325 2.1934 -7.6788 28 6 -0.0260 1.4663 -6.5739 29 16 0.3878 1.6196 -4.8708 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6958 -1.7517 1.2422 34 1 1.6593 -0.2158 2.1421 35 1 3.9417 -1.2840 2.0988 36 1 3.9164 0.3404 1.3686 37 1 7.0383 -3.6947 2.0318 38 1 3.9144 0.3408 -1.3673 39 1 3.9418 -1.2849 -2.0980 40 1 1.2755 0.8865 -2.4073 41 1 0.9612 -1.6898 -6.1854 42 1 -0.9308 1.6216 -9.7211 43 1 -0.8229 3.2336 -7.6765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968597246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:02 Heat of formation + Delta-G solvation = 59.539004 kcal Electronic energy + Delta-G solvation = -26000.615506 eV Core-core repulsion = 22366.807926 eV Total energy + Delta-G solvation = -3633.807580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44511 -39.82938 -37.92263 -35.23580 -34.60270 -33.10736 -31.38162 -31.21381 -29.80224 -28.24729 -27.47297 -24.54614 -23.69692 -22.64198 -21.63208 -21.27282 -20.89204 -20.06727 -19.25804 -18.61751 -16.88242 -16.78998 -15.86806 -15.67141 -15.20242 -15.13881 -14.69509 -14.55207 -14.11771 -13.91340 -13.75992 -13.71924 -13.45365 -13.22632 -12.98430 -12.62237 -12.18679 -12.16960 -12.07017 -11.74991 -11.60970 -11.26874 -11.12795 -10.92480 -10.86101 -10.62630 -10.11560 -9.98590 -9.93610 -9.82874 -9.66625 -9.41220 -9.00764 -8.51909 -8.34465 -7.89248 -6.93508 -5.89206 -3.25609 0.38733 1.24257 1.78088 2.19510 2.38255 2.68492 3.27854 3.32901 3.34705 3.51339 3.54391 4.56911 4.58646 4.60924 4.74877 4.96984 5.02378 5.11760 5.17415 5.21255 5.27793 5.46983 5.52911 5.68421 5.76291 5.80070 5.84319 5.87116 5.96651 6.05952 6.14955 6.21715 6.29136 6.37767 6.45103 6.51995 6.53235 6.63827 6.68254 6.79533 6.97640 7.09090 7.61753 8.01112 8.31322 8.39992 8.99528 9.76957 10.12723 11.26782 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.002797 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.887544 B =10006.620209 C =10573.746181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.069 0.931 4 C -0.126 4.126 5 C 0.121 3.879 6 N -0.601 5.601 7 C -0.257 4.257 8 H 0.087 0.913 9 C 0.023 3.977 10 N -0.908 5.908 11 Si 0.883 3.117 12 H -0.288 1.288 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.143 3.857 16 C 0.133 3.867 17 H 0.094 0.906 18 N -0.714 5.714 19 C 0.587 3.413 20 O -0.521 6.521 21 C -0.227 4.227 22 C -0.035 4.035 23 C 0.026 3.974 24 N -0.557 5.557 25 H 0.420 0.580 26 C 0.056 3.944 27 C -0.172 4.172 28 C -0.189 4.189 29 S 0.159 5.841 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.393 0.607 41 H 0.150 0.850 42 H 0.178 0.822 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.951 13.679 -16.887 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.165 4.165 5 C -0.004 4.004 6 N -0.324 5.324 7 C -0.385 4.385 8 H 0.104 0.896 9 C -0.176 4.176 10 N -0.551 5.551 11 Si 0.714 3.286 12 H -0.216 1.216 13 H -0.232 1.232 14 H -0.196 1.196 15 C 0.016 3.984 16 C 0.028 3.972 17 H 0.112 0.888 18 N -0.365 5.365 19 C 0.372 3.628 20 O -0.398 6.398 21 C -0.348 4.348 22 C -0.070 4.070 23 C -0.088 4.088 24 N -0.158 5.158 25 H 0.258 0.742 26 C -0.078 4.078 27 C -0.202 4.202 28 C -0.311 4.311 29 S 0.421 5.579 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.087 0.913 40 H 0.227 0.773 41 H 0.168 0.832 42 H 0.195 0.805 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.595 13.735 -15.812 27.354 hybrid contribution 0.220 -0.207 -0.706 0.768 sum -17.375 13.528 -16.518 27.527 Atomic orbital electron populations 1.21849 0.95443 1.01936 1.01012 1.21317 0.95148 0.99642 0.95076 0.91271 1.22075 0.98268 1.00718 0.95485 1.21406 0.91752 0.96997 0.90256 1.44281 1.48610 1.40514 0.99026 1.18953 1.09498 1.02583 1.07509 0.89563 1.25269 0.97452 0.96693 0.98173 1.69847 1.32645 1.22000 1.30620 0.86948 0.76239 0.84899 0.80546 1.21625 1.23228 1.19601 1.21235 0.90236 0.96909 0.90026 1.21772 0.96436 0.97384 0.81625 0.88836 1.45923 1.66191 1.14012 1.10335 1.16811 0.78074 0.86139 0.81728 1.90891 1.49632 1.15204 1.84120 1.23843 1.14166 0.98467 0.98288 1.19267 0.98187 1.00476 0.89090 1.18005 1.09907 0.94964 0.85948 1.41915 1.54066 1.11862 1.07930 0.74238 1.21865 1.02279 0.83706 0.99942 1.20126 1.09875 1.00057 0.90117 1.23169 1.11244 0.97840 0.98813 1.83664 1.65216 1.06871 1.02147 0.92609 0.92763 0.93122 0.91349 0.92126 0.90727 0.95650 0.92809 0.95874 0.91292 0.77324 0.83210 0.80534 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.02 37.16 0.34 -1.45 16 2 C -0.09 -1.39 2.27 -90.56 -0.21 -1.59 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.13 -2.17 5.37 -26.59 -0.14 -2.31 16 5 C 0.12 2.64 4.20 -3.71 -0.02 2.62 16 6 N -0.60 -14.66 2.77 -172.32 -0.48 -15.14 16 7 C -0.26 -7.44 10.03 -15.06 -0.15 -7.59 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 10 N -0.91 -28.46 13.97 55.49 0.78 -27.68 16 11 Si 0.88 22.66 24.34 -169.99 -4.14 18.52 16 12 H -0.29 -7.07 6.62 56.52 0.37 -6.70 16 13 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 14 H -0.27 -6.81 6.64 56.52 0.38 -6.43 16 15 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 16 C 0.13 2.30 2.07 -67.81 -0.14 2.16 16 17 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 18 N -0.71 -10.41 4.37 -55.08 -0.24 -10.65 16 19 C 0.59 9.43 7.74 -12.97 -0.10 9.33 16 20 O -0.52 -10.47 16.44 5.16 0.08 -10.38 16 21 C -0.23 -3.01 6.38 -37.17 -0.24 -3.25 16 22 C -0.03 -0.42 9.88 -40.23 -0.40 -0.82 16 23 C 0.03 0.27 7.67 -84.02 -0.64 -0.37 16 24 N -0.56 -4.01 6.21 -10.90 -0.07 -4.08 16 25 H 0.42 1.77 8.96 -40.82 -0.37 1.41 16 26 C 0.06 0.34 11.85 -16.92 -0.20 0.14 16 27 C -0.17 -1.40 10.85 -39.60 -0.43 -1.83 16 28 C -0.19 -2.02 7.31 -38.29 -0.28 -2.30 16 29 S 0.16 1.69 22.29 -107.50 -2.40 -0.71 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 36 H 0.03 0.54 7.07 -51.93 -0.37 0.17 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 40 H 0.39 4.66 7.36 -40.82 -0.30 4.36 16 41 H 0.15 1.78 8.00 -52.49 -0.42 1.36 16 42 H 0.18 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -35.28 356.80 -9.67 -44.95 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.87 Total: 3.49 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -2.72 Total: -3.70 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.01 Total: -57.55 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.14 Total: 18.52 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.40 Total: -0.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.28 -9.67 -44.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.493 kcal (2) G-P(sol) polarization free energy of solvation -35.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds