Wall clock time and date at job start Tue Mar 31 2020 18:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 109.45707 * 2 1 4 4 C 1.53081 * 109.45003 * 119.81036 * 2 1 3 5 5 C 1.53190 * 109.29209 * 181.24476 * 4 2 1 6 6 N 1.46921 * 108.89311 * 305.57883 * 5 4 2 7 7 C 1.36940 * 120.63187 * 233.51481 * 6 5 4 8 8 H 1.08001 * 120.00319 * 152.61971 * 7 6 5 9 9 C 1.38813 * 119.99903 * 332.62203 * 7 6 5 10 10 N 1.31624 * 120.00070 * 159.34992 * 9 7 6 11 11 Si 1.86800 * 120.00077 * 339.35529 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.87851 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.88430 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.87654 * 11 9 7 15 15 C 1.46923 * 118.74178 * 53.54201 * 6 5 4 16 16 C 1.53035 * 109.46080 * 240.02215 * 2 1 3 17 17 H 1.08999 * 109.49849 * 298.56276 * 16 2 1 18 18 N 1.46496 * 109.52228 * 58.64925 * 16 2 1 19 19 C 1.34782 * 119.99541 * 204.85494 * 18 16 2 20 20 O 1.21728 * 120.00099 * 359.97438 * 19 18 16 21 21 C 1.46413 * 119.99650 * 179.97438 * 19 18 16 22 22 C 1.35779 * 124.95773 * 179.97438 * 21 19 18 23 23 C 1.38875 * 115.18480 * 180.02562 * 22 21 19 24 24 N 1.39746 * 139.91410 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.63008 * 359.97418 * 24 23 22 26 26 C 1.36213 * 108.73582 * 179.97438 * 24 23 22 27 27 C 1.34514 * 109.29523 * 359.97438 * 26 24 23 28 28 C 1.38235 * 113.39590 * 0.02562 * 23 22 21 29 29 S 1.75618 * 124.96059 * 359.69647 * 21 19 18 30 30 H 1.08997 * 109.46610 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47206 * 299.97679 * 1 2 3 32 32 H 1.08994 * 109.47041 * 59.97660 * 1 2 3 33 33 H 1.08992 * 109.38800 * 61.36895 * 4 2 1 34 34 H 1.09002 * 109.61927 * 301.26174 * 4 2 1 35 35 H 1.08999 * 109.58729 * 185.71870 * 5 4 2 36 36 H 1.09004 * 109.58886 * 65.43758 * 5 4 2 37 37 H 0.97001 * 119.99914 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.59094 * 66.17180 * 15 6 5 39 39 H 1.08996 * 109.58998 * 186.60934 * 15 6 5 40 40 H 0.96997 * 120.00610 * 24.85488 * 18 16 2 41 41 H 1.07997 * 122.40864 * 359.97438 * 22 21 19 42 42 H 1.07995 * 125.35491 * 179.97438 * 26 24 23 43 43 H 1.07995 * 126.07507 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7176 1.2524 5 6 3.5714 -0.6883 1.2645 6 7 4.0679 -1.2488 0.0004 7 6 4.9765 -2.2733 0.0006 8 1 5.0129 -2.9630 -0.8297 9 6 5.8508 -2.4254 1.0680 10 7 6.4276 -3.5883 1.2857 11 14 6.2086 -0.9798 2.1956 12 1 5.2791 -1.0130 3.3532 13 1 7.6089 -1.0664 2.6824 14 1 6.0223 0.2895 1.4475 15 6 3.5715 -0.6888 -1.2640 16 6 2.0399 -0.7210 -1.2499 17 1 1.6980 -1.7559 -1.2379 18 7 1.5257 -0.0498 -2.4462 19 6 1.4003 -0.7335 -3.6010 20 8 1.7148 -1.9084 -3.6500 21 6 0.8859 -0.0628 -4.7965 22 6 0.7192 -0.6523 -6.0082 23 6 0.2162 0.1750 -7.0038 24 7 -0.1402 0.1281 -8.3542 25 1 -0.0795 -0.6517 -8.9279 26 6 -0.5869 1.3582 -8.7318 27 6 -0.5325 2.1934 -7.6788 28 6 -0.0260 1.4663 -6.5739 29 16 0.3878 1.6196 -4.8708 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6958 -1.7517 1.2422 34 1 1.6593 -0.2158 2.1421 35 1 3.9417 -1.2840 2.0988 36 1 3.9164 0.3404 1.3686 37 1 7.0383 -3.6947 2.0318 38 1 3.9144 0.3408 -1.3673 39 1 3.9418 -1.2849 -2.0980 40 1 1.2755 0.8865 -2.4073 41 1 0.9612 -1.6898 -6.1854 42 1 -0.9308 1.6216 -9.7211 43 1 -0.8229 3.2336 -7.6765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968597246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:01 Heat of formation + Delta-G solvation = 34.225979 kcal Electronic energy + Delta-G solvation = -26001.713161 eV Core-core repulsion = 22366.807926 eV Total energy + Delta-G solvation = -3634.905235 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.12269 -41.17206 -39.41168 -36.40174 -35.99788 -34.61455 -33.42263 -31.86927 -31.22657 -29.41016 -28.83928 -25.93244 -25.19197 -23.89636 -22.93695 -22.54015 -21.63863 -21.45605 -20.47184 -19.42059 -18.79770 -17.88190 -17.38077 -16.99819 -16.48182 -16.44118 -15.81397 -15.57550 -15.45506 -15.26656 -15.15512 -15.01866 -14.67450 -14.42997 -14.36678 -13.77843 -13.67733 -13.60039 -13.30346 -12.97111 -12.72695 -12.67866 -12.52380 -12.48526 -12.21685 -11.99554 -11.80537 -11.60949 -11.44181 -11.30923 -11.17227 -10.79686 -10.66430 -10.26046 -9.14692 -8.94156 -8.60834 -8.18389 -5.52616 -0.51740 0.42050 0.93881 1.29726 1.37616 1.41820 1.52330 1.73751 1.86849 2.14683 2.27864 2.40760 3.04101 3.32624 3.64910 3.75885 3.89998 3.95743 3.99015 4.16869 4.22024 4.29468 4.38574 4.50466 4.56244 4.56541 4.74920 4.81530 4.83478 4.93636 4.96679 4.97997 5.02435 5.07495 5.11087 5.14614 5.30446 5.39463 5.53937 5.57219 5.79946 5.83001 6.09378 6.41668 6.60498 6.87763 7.10260 7.58167 7.96253 9.02021 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.002797 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.887544 B =10006.620209 C =10573.746181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 H 0.094 0.906 4 C -0.119 4.119 5 C 0.113 3.887 6 N -0.616 5.616 7 C -0.256 4.256 8 H 0.035 0.965 9 C -0.037 4.037 10 N -0.959 5.959 11 Si 0.959 3.041 12 H -0.265 1.265 13 H -0.310 1.310 14 H -0.257 1.257 15 C 0.144 3.856 16 C 0.147 3.853 17 H 0.057 0.943 18 N -0.699 5.699 19 C 0.587 3.413 20 O -0.577 6.577 21 C -0.268 4.268 22 C -0.028 4.028 23 C -0.008 4.008 24 N -0.548 5.548 25 H 0.434 0.566 26 C 0.090 3.910 27 C -0.197 4.197 28 C -0.196 4.196 29 S 0.190 5.810 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.410 0.590 41 H 0.140 0.860 42 H 0.227 0.773 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.682 18.222 -17.745 32.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.104 4.104 3 H 0.112 0.888 4 C -0.159 4.159 5 C -0.011 4.011 6 N -0.341 5.341 7 C -0.386 4.386 8 H 0.053 0.947 9 C -0.232 4.232 10 N -0.605 5.605 11 Si 0.787 3.213 12 H -0.191 1.191 13 H -0.239 1.239 14 H -0.181 1.181 15 C 0.017 3.983 16 C 0.041 3.959 17 H 0.075 0.925 18 N -0.350 5.350 19 C 0.375 3.625 20 O -0.458 6.458 21 C -0.388 4.388 22 C -0.065 4.065 23 C -0.120 4.120 24 N -0.150 5.150 25 H 0.274 0.726 26 C -0.045 4.045 27 C -0.226 4.226 28 C -0.319 4.319 29 S 0.453 5.547 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.248 0.752 41 H 0.158 0.842 42 H 0.243 0.757 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.378 18.329 -16.671 32.080 hybrid contribution 0.989 -1.643 -0.740 2.055 sum -19.389 16.686 -17.411 30.944 Atomic orbital electron populations 1.21791 0.92797 1.01806 1.03111 1.21300 0.97225 0.99876 0.92015 0.88787 1.22003 0.94847 1.00657 0.98356 1.21565 0.94838 0.96926 0.87780 1.44337 1.48360 1.40016 1.01337 1.18765 1.10857 1.02923 1.06026 0.94735 1.26004 0.97323 0.99359 1.00479 1.70002 1.34037 1.24368 1.32114 0.85730 0.75732 0.80944 0.78940 1.19104 1.23932 1.18101 1.21279 0.92790 0.96650 0.87540 1.21347 0.93740 0.96597 0.84250 0.92471 1.45662 1.65531 1.14646 1.09204 1.17242 0.77009 0.85565 0.82687 1.90857 1.52171 1.17711 1.85088 1.23490 1.17303 1.00632 0.97360 1.19347 0.97163 1.00323 0.89626 1.17913 1.11818 0.94834 0.87473 1.42076 1.53071 1.13130 1.06753 0.72597 1.22723 0.98412 0.82182 1.01228 1.20570 1.10875 1.01522 0.89651 1.23636 1.10603 0.98350 0.99264 1.83314 1.64780 1.04027 1.02537 0.93935 0.90087 0.91590 0.93271 0.88166 0.93003 0.93712 0.92784 0.93891 0.95089 0.75247 0.84232 0.75692 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.02 71.99 0.65 -2.30 16 2 C -0.09 -2.35 2.27 -10.75 -0.02 -2.37 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.12 -3.86 5.37 30.68 0.16 -3.69 16 5 C 0.11 4.76 4.20 86.36 0.36 5.12 16 6 N -0.62 -30.91 2.77 -699.10 -1.94 -32.85 16 7 C -0.26 -15.74 10.03 84.03 0.84 -14.90 16 8 H 0.03 2.41 8.06 -2.91 -0.02 2.39 16 9 C -0.04 -2.28 5.23 84.86 0.44 -1.83 16 10 N -0.96 -63.12 13.97 21.65 0.30 -62.82 16 11 Si 0.96 47.52 24.34 68.60 1.67 49.18 16 12 H -0.26 -12.06 6.62 99.48 0.66 -11.40 16 13 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 14 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 15 C 0.14 6.27 6.09 86.37 0.53 6.79 16 16 C 0.15 5.19 2.07 45.07 0.09 5.28 16 17 H 0.06 2.46 7.58 -2.39 -0.02 2.44 16 18 N -0.70 -20.53 4.37 -446.37 -1.95 -22.48 16 19 C 0.59 19.95 7.74 86.37 0.67 20.61 16 20 O -0.58 -25.38 16.44 -4.44 -0.07 -25.45 16 21 C -0.27 -7.31 6.38 23.83 0.15 -7.16 16 22 C -0.03 -0.71 9.88 21.85 0.22 -0.50 16 23 C -0.01 -0.15 7.67 38.03 0.29 0.14 16 24 N -0.55 -6.37 6.21 -188.39 -1.17 -7.54 16 25 H 0.43 2.53 8.96 -92.71 -0.83 1.69 16 26 C 0.09 0.68 11.85 83.16 0.99 1.66 16 27 C -0.20 -2.48 10.85 22.25 0.24 -2.24 16 28 C -0.20 -3.79 7.31 23.11 0.17 -3.62 16 29 S 0.19 3.80 22.29 -56.49 -1.26 2.54 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.23 7.36 -2.39 -0.02 1.21 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.05 2.41 4.50 -2.39 -0.01 2.40 16 36 H 0.05 1.74 7.07 -2.38 -0.02 1.72 16 37 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.03 1.54 7.93 -2.39 -0.02 1.52 16 40 H 0.41 9.12 7.36 -92.71 -0.68 8.43 16 41 H 0.14 3.66 8.00 -2.91 -0.02 3.63 16 42 H 0.23 -0.55 8.06 -2.91 -0.02 -0.58 16 43 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -84.73 356.80 0.82 -83.92 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -0.55 Total: 14.51 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.78 Total: 1.00 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.75 Total: -125.70 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.67 Total: 49.18 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.26 Total: 2.54 kcal Total: -84.73 0.82 -83.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.144 kcal (2) G-P(sol) polarization free energy of solvation -84.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds