Wall clock time and date at job start Tue Mar 31 2020 18:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.45726 * 2 1 4 4 C 1.53035 * 109.46070 * 240.04265 * 2 1 3 5 5 C 1.53194 * 109.31485 * 178.61364 * 4 2 1 6 6 N 1.46928 * 108.77377 * 54.63177 * 5 4 2 7 7 C 1.36933 * 120.62683 * 126.41352 * 6 5 4 8 8 H 1.07997 * 120.00331 * 332.60317 * 7 6 5 9 9 C 1.38819 * 119.99873 * 152.60312 * 7 6 5 10 10 N 1.31618 * 119.99850 * 159.36336 * 9 7 6 11 11 Si 1.86800 * 119.99878 * 339.36277 * 9 7 6 12 12 H 1.48501 * 109.47178 * 92.91232 * 11 9 7 13 13 H 1.48497 * 109.46984 * 212.91546 * 11 9 7 14 14 H 1.48500 * 109.46913 * 332.91467 * 11 9 7 15 15 C 1.46923 * 118.74217 * 306.39814 * 6 5 4 16 16 C 1.53039 * 109.45897 * 119.97529 * 2 1 3 17 17 H 1.09002 * 109.49583 * 301.33356 * 16 2 1 18 18 N 1.46498 * 109.50129 * 61.40000 * 16 2 1 19 19 C 1.34776 * 120.00443 * 204.99733 * 18 16 2 20 20 O 1.21736 * 119.99268 * 0.02562 * 19 18 16 21 21 C 1.46410 * 120.00123 * 180.02562 * 19 18 16 22 22 C 1.35776 * 124.95938 * 180.02562 * 21 19 18 23 23 C 1.38870 * 115.18798 * 179.97438 * 22 21 19 24 24 N 1.39739 * 139.91605 * 180.02562 * 23 22 21 25 25 H 0.96997 * 125.63500 * 359.95433 * 24 23 22 26 26 C 1.36216 * 108.73468 * 179.97438 * 24 23 22 27 27 C 1.34505 * 109.29620 * 359.97438 * 26 24 23 28 28 C 1.38242 * 113.39018 * 0.02562 * 23 22 21 29 29 S 1.75621 * 124.95812 * 359.69907 * 21 19 18 30 30 H 1.08991 * 109.46985 * 300.02633 * 1 2 3 31 31 H 1.09002 * 109.46408 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47147 * 60.02732 * 1 2 3 33 33 H 1.08998 * 109.49977 * 298.56337 * 4 2 1 34 34 H 1.09006 * 109.50113 * 58.66013 * 4 2 1 35 35 H 1.08999 * 109.58312 * 294.84663 * 5 4 2 36 36 H 1.08995 * 109.70337 * 174.49044 * 5 4 2 37 37 H 0.96999 * 119.99844 * 180.02562 * 10 9 7 38 38 H 1.09006 * 109.58387 * 293.82132 * 15 6 5 39 39 H 1.08998 * 109.58790 * 173.39368 * 15 6 5 40 40 H 0.97006 * 119.99671 * 25.00052 * 18 16 2 41 41 H 1.08000 * 122.40627 * 0.02562 * 22 21 19 42 42 H 1.08003 * 125.35189 * 180.02562 * 26 24 23 43 43 H 1.08003 * 126.07538 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2501 5 6 3.5715 -0.6883 -1.2644 6 7 4.0680 -1.2487 -0.0001 7 6 4.9765 -2.2733 -0.0003 8 1 5.0129 -2.9626 -0.8308 9 6 5.8508 -2.4258 1.0671 10 7 6.4277 -3.5887 1.2842 11 14 6.2084 -0.9806 2.1953 12 1 5.2794 -1.0149 3.3534 13 1 7.6089 -1.0669 2.6815 14 1 6.0212 0.2889 1.4480 15 6 3.5714 -0.6887 1.2642 16 6 2.0399 -0.7209 1.2500 17 1 1.6573 -0.2210 2.1398 18 7 1.5796 -2.1116 1.2344 19 6 1.4510 -2.7920 2.3907 20 8 1.7171 -2.2507 3.4481 21 6 0.9915 -4.1820 2.3750 22 6 0.8259 -4.9592 3.4760 23 6 0.3792 -6.2501 3.2264 24 7 0.0497 -7.4197 3.9166 25 1 0.0902 -7.5386 4.8784 26 6 -0.3371 -8.3652 3.0156 27 6 -0.2701 -7.8505 1.7748 28 6 0.1821 -6.5127 1.8835 29 16 0.5661 -5.0850 0.9300 30 1 -0.3633 0.5142 0.8897 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5134 -0.8902 33 1 1.6980 -1.7554 -1.2385 34 1 1.6573 -0.2204 -2.1399 35 1 3.9143 0.3412 -1.3673 36 1 3.9438 -1.2827 -2.0987 37 1 7.0383 -3.6954 2.0303 38 1 3.9143 0.3408 1.3674 39 1 3.9417 -1.2848 2.0983 40 1 1.3673 -2.5428 0.3918 41 1 1.0265 -4.5989 4.4742 42 1 -0.6494 -9.3699 3.2594 43 1 -0.5167 -8.3660 0.8583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968597247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:06 Heat of formation + Delta-G solvation = 61.740743 kcal Electronic energy + Delta-G solvation = -27022.082501 eV Core-core repulsion = 23388.370396 eV Total energy + Delta-G solvation = -3633.712105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.14036 -39.74639 -37.77983 -34.88217 -34.24695 -32.89097 -31.32241 -30.92828 -29.91629 -28.13539 -27.34360 -24.21914 -23.75851 -22.63249 -21.60132 -21.19649 -20.75058 -19.61976 -18.92504 -18.27201 -16.84069 -16.68259 -15.46208 -15.33303 -15.29394 -14.78580 -14.50532 -14.29375 -14.06639 -13.78684 -13.55245 -13.45007 -13.34514 -13.29783 -12.73540 -12.66321 -12.12639 -11.97512 -11.87436 -11.66541 -11.46596 -11.31085 -11.11459 -10.75846 -10.58134 -10.50118 -10.23138 -9.89469 -9.79452 -9.62210 -9.57241 -9.37181 -8.72021 -8.40378 -8.01887 -7.55552 -6.89907 -5.87957 -3.23531 0.72301 1.59234 2.13502 2.48838 2.69496 2.97636 3.45429 3.54285 3.56121 3.57039 3.75594 4.61746 4.86191 4.90285 4.98414 5.01516 5.08863 5.14498 5.23284 5.40430 5.49181 5.49665 5.76361 5.77784 5.81806 5.87972 5.99777 6.00596 6.08040 6.10756 6.16758 6.23981 6.34809 6.40617 6.51743 6.53642 6.64272 6.72654 6.74639 6.84596 7.01952 7.37823 7.94098 8.02664 8.38786 8.63444 8.99576 9.79378 10.15663 11.27635 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.004638 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.768833 B = 6035.104192 C = 7021.633567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.132 4.132 5 C 0.146 3.854 6 N -0.601 5.601 7 C -0.259 4.259 8 H 0.085 0.915 9 C 0.029 3.971 10 N -0.905 5.905 11 Si 0.874 3.126 12 H -0.284 1.284 13 H -0.304 1.304 14 H -0.271 1.271 15 C 0.112 3.888 16 C 0.135 3.865 17 H 0.083 0.917 18 N -0.692 5.692 19 C 0.593 3.407 20 O -0.540 6.540 21 C -0.218 4.218 22 C -0.042 4.042 23 C 0.028 3.972 24 N -0.559 5.559 25 H 0.418 0.582 26 C 0.051 3.949 27 C -0.171 4.171 28 C -0.192 4.192 29 S 0.171 5.829 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.023 0.977 36 H 0.064 0.936 37 H 0.261 0.739 38 H 0.033 0.967 39 H 0.081 0.919 40 H 0.397 0.603 41 H 0.147 0.853 42 H 0.176 0.824 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.453 -4.218 0.054 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.171 4.171 5 C 0.020 3.980 6 N -0.325 5.325 7 C -0.387 4.387 8 H 0.102 0.898 9 C -0.171 4.171 10 N -0.548 5.548 11 Si 0.704 3.296 12 H -0.212 1.212 13 H -0.233 1.233 14 H -0.196 1.196 15 C -0.014 4.014 16 C 0.029 3.971 17 H 0.101 0.899 18 N -0.342 5.342 19 C 0.379 3.621 20 O -0.419 6.419 21 C -0.338 4.338 22 C -0.078 4.078 23 C -0.085 4.085 24 N -0.160 5.160 25 H 0.255 0.745 26 C -0.082 4.082 27 C -0.200 4.200 28 C -0.314 4.314 29 S 0.434 5.566 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.099 0.901 40 H 0.233 0.767 41 H 0.165 0.835 42 H 0.193 0.807 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.116 -3.545 -0.539 17.488 hybrid contribution 0.412 -0.057 2.334 2.370 sum -16.704 -3.602 1.795 17.182 Atomic orbital electron populations 1.21848 0.95447 1.01719 1.01232 1.21324 0.95160 0.99823 0.95059 0.90111 1.22097 0.98910 0.99875 0.96239 1.20955 0.90855 0.96685 0.89527 1.44301 1.48762 1.40353 0.99076 1.18830 1.09662 1.02802 1.07432 0.89759 1.25229 0.97357 0.96478 0.97993 1.69833 1.32519 1.21943 1.30478 0.87063 0.76324 0.84961 0.81227 1.21155 1.23257 1.19588 1.21798 0.91135 0.97558 0.90940 1.21547 0.96855 0.80801 0.97896 0.89921 1.45618 1.66760 1.13871 1.07953 1.16736 0.77376 0.83619 0.84419 1.90799 1.51392 1.68963 1.30767 1.23787 1.13835 0.99237 0.96950 1.19175 0.99262 0.89367 0.99981 1.17983 1.10297 0.89851 0.90418 1.41858 1.56105 1.09159 1.08885 0.74475 1.21797 1.03363 0.94632 0.88423 1.20098 1.10392 0.92082 0.97470 1.23203 1.11678 1.00354 0.96161 1.83701 1.66488 1.00473 1.05901 0.92931 0.92799 0.92788 0.92334 0.92129 0.95905 0.91760 0.92915 0.94910 0.90059 0.76714 0.83543 0.80717 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.05 37.16 0.34 -1.42 16 2 C -0.09 -1.38 2.48 -90.58 -0.22 -1.61 16 3 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.13 -1.97 5.20 -26.61 -0.14 -2.11 16 5 C 0.15 2.73 6.52 -3.71 -0.02 2.70 16 6 N -0.60 -14.05 2.69 -172.32 -0.46 -14.52 16 7 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.03 0.85 5.23 -17.43 -0.09 0.76 16 10 N -0.91 -28.48 13.97 55.49 0.78 -27.70 16 11 Si 0.87 23.46 24.35 -169.99 -4.14 19.32 16 12 H -0.28 -7.75 6.62 56.52 0.37 -7.37 16 13 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 14 H -0.27 -7.01 6.64 56.52 0.38 -6.64 16 15 C 0.11 2.54 3.80 -3.71 -0.01 2.53 16 16 C 0.14 2.49 2.24 -67.81 -0.15 2.34 16 17 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 18 N -0.69 -12.80 4.25 -55.08 -0.23 -13.03 16 19 C 0.59 11.98 7.74 -12.97 -0.10 11.88 16 20 O -0.54 -12.46 16.43 5.16 0.08 -12.37 16 21 C -0.22 -3.89 6.38 -37.18 -0.24 -4.13 16 22 C -0.04 -0.69 9.88 -40.23 -0.40 -1.09 16 23 C 0.03 0.41 7.67 -84.02 -0.64 -0.23 16 24 N -0.56 -5.83 6.21 -10.90 -0.07 -5.89 16 25 H 0.42 2.99 8.96 -40.82 -0.37 2.63 16 26 C 0.05 0.47 11.85 -16.92 -0.20 0.27 16 27 C -0.17 -1.97 10.85 -39.61 -0.43 -2.40 16 28 C -0.19 -2.81 7.31 -38.28 -0.28 -3.09 16 29 S 0.17 2.62 22.29 -107.50 -2.40 0.23 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.90 6.40 -51.93 -0.33 0.56 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 38 H 0.03 0.73 7.08 -51.93 -0.37 0.36 16 39 H 0.08 2.16 4.50 -51.93 -0.23 1.92 16 40 H 0.40 6.78 5.70 -40.82 -0.23 6.55 16 41 H 0.15 2.29 8.00 -52.49 -0.42 1.87 16 42 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -35.48 353.66 -9.58 -45.06 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.72 Total: 6.56 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -2.75 Total: -2.98 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: 0.01 Total: -61.14 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.37 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -4.14 Total: 19.32 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.40 Total: 0.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.48 -9.58 -45.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.801 kcal (2) G-P(sol) polarization free energy of solvation -35.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds