Wall clock time and date at job start Tue Mar 31 2020 18:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08995 * 109.45726 * 2 1 4 4 C 1.53035 * 109.46070 * 240.04265 * 2 1 3 5 5 C 1.53194 * 109.31485 * 178.61364 * 4 2 1 6 6 N 1.46928 * 108.77377 * 54.63177 * 5 4 2 7 7 C 1.36933 * 120.62683 * 126.41352 * 6 5 4 8 8 H 1.07997 * 120.00331 * 332.60317 * 7 6 5 9 9 C 1.38819 * 119.99873 * 152.60312 * 7 6 5 10 10 N 1.31618 * 119.99850 * 159.36336 * 9 7 6 11 11 Si 1.86800 * 119.99878 * 339.36277 * 9 7 6 12 12 H 1.48501 * 109.47178 * 92.91232 * 11 9 7 13 13 H 1.48497 * 109.46984 * 212.91546 * 11 9 7 14 14 H 1.48500 * 109.46913 * 332.91467 * 11 9 7 15 15 C 1.46923 * 118.74217 * 306.39814 * 6 5 4 16 16 C 1.53039 * 109.45897 * 119.97529 * 2 1 3 17 17 H 1.09002 * 109.49583 * 301.33356 * 16 2 1 18 18 N 1.46498 * 109.50129 * 61.40000 * 16 2 1 19 19 C 1.34776 * 120.00443 * 204.99733 * 18 16 2 20 20 O 1.21736 * 119.99268 * 0.02562 * 19 18 16 21 21 C 1.46410 * 120.00123 * 180.02562 * 19 18 16 22 22 C 1.35776 * 124.95938 * 180.02562 * 21 19 18 23 23 C 1.38870 * 115.18798 * 179.97438 * 22 21 19 24 24 N 1.39739 * 139.91605 * 180.02562 * 23 22 21 25 25 H 0.96997 * 125.63500 * 359.95433 * 24 23 22 26 26 C 1.36216 * 108.73468 * 179.97438 * 24 23 22 27 27 C 1.34505 * 109.29620 * 359.97438 * 26 24 23 28 28 C 1.38242 * 113.39018 * 0.02562 * 23 22 21 29 29 S 1.75621 * 124.95812 * 359.69907 * 21 19 18 30 30 H 1.08991 * 109.46985 * 300.02633 * 1 2 3 31 31 H 1.09002 * 109.46408 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47147 * 60.02732 * 1 2 3 33 33 H 1.08998 * 109.49977 * 298.56337 * 4 2 1 34 34 H 1.09006 * 109.50113 * 58.66013 * 4 2 1 35 35 H 1.08999 * 109.58312 * 294.84663 * 5 4 2 36 36 H 1.08995 * 109.70337 * 174.49044 * 5 4 2 37 37 H 0.96999 * 119.99844 * 180.02562 * 10 9 7 38 38 H 1.09006 * 109.58387 * 293.82132 * 15 6 5 39 39 H 1.08998 * 109.58790 * 173.39368 * 15 6 5 40 40 H 0.97006 * 119.99671 * 25.00052 * 18 16 2 41 41 H 1.08000 * 122.40627 * 0.02562 * 22 21 19 42 42 H 1.08003 * 125.35189 * 180.02562 * 26 24 23 43 43 H 1.08003 * 126.07538 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7205 -1.2501 5 6 3.5715 -0.6883 -1.2644 6 7 4.0680 -1.2487 -0.0001 7 6 4.9765 -2.2733 -0.0003 8 1 5.0129 -2.9626 -0.8308 9 6 5.8508 -2.4258 1.0671 10 7 6.4277 -3.5887 1.2842 11 14 6.2084 -0.9806 2.1953 12 1 5.2794 -1.0149 3.3534 13 1 7.6089 -1.0669 2.6815 14 1 6.0212 0.2889 1.4480 15 6 3.5714 -0.6887 1.2642 16 6 2.0399 -0.7209 1.2500 17 1 1.6573 -0.2210 2.1398 18 7 1.5796 -2.1116 1.2344 19 6 1.4510 -2.7920 2.3907 20 8 1.7171 -2.2507 3.4481 21 6 0.9915 -4.1820 2.3750 22 6 0.8259 -4.9592 3.4760 23 6 0.3792 -6.2501 3.2264 24 7 0.0497 -7.4197 3.9166 25 1 0.0902 -7.5386 4.8784 26 6 -0.3371 -8.3652 3.0156 27 6 -0.2701 -7.8505 1.7748 28 6 0.1821 -6.5127 1.8835 29 16 0.5661 -5.0850 0.9300 30 1 -0.3633 0.5142 0.8897 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5134 -0.8902 33 1 1.6980 -1.7554 -1.2385 34 1 1.6573 -0.2204 -2.1399 35 1 3.9143 0.3412 -1.3673 36 1 3.9438 -1.2827 -2.0987 37 1 7.0383 -3.6954 2.0303 38 1 3.9143 0.3408 1.3674 39 1 3.9417 -1.2848 2.0983 40 1 1.3673 -2.5428 0.3918 41 1 1.0265 -4.5989 4.4742 42 1 -0.6494 -9.3699 3.2594 43 1 -0.5167 -8.3660 0.8583 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968597247.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:05 Heat of formation + Delta-G solvation = 36.664250 kcal Electronic energy + Delta-G solvation = -27023.169899 eV Core-core repulsion = 23388.370396 eV Total energy + Delta-G solvation = -3634.799503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11879 -41.24984 -39.31605 -36.15217 -35.94028 -34.42537 -33.30001 -31.88425 -31.40177 -29.40868 -28.78342 -25.78475 -25.27768 -24.05483 -22.84057 -22.75627 -21.71419 -20.87939 -20.43743 -19.44217 -18.70842 -18.02773 -17.28249 -16.86097 -16.49072 -16.24700 -15.97510 -15.60342 -15.38450 -15.14509 -15.05922 -14.94204 -14.83119 -14.37738 -14.37121 -13.80715 -13.66857 -13.65115 -13.17346 -12.97801 -12.90181 -12.59675 -12.48562 -12.41243 -12.20146 -11.97670 -11.81842 -11.69577 -11.38854 -11.16598 -11.14261 -10.76356 -10.65903 -10.12104 -9.13146 -8.87669 -8.61335 -8.17957 -5.46055 -0.49296 0.43244 0.96344 1.28170 1.30936 1.38589 1.39815 1.73662 1.93229 2.20081 2.38062 2.40031 3.04093 3.36078 3.66963 3.81310 3.92363 3.96677 4.01540 4.16170 4.22380 4.32472 4.48846 4.54794 4.62141 4.63851 4.68212 4.78078 4.87831 4.89054 4.97303 5.01400 5.06782 5.12285 5.19310 5.20694 5.42029 5.46465 5.56208 5.56913 5.78900 5.87856 6.12327 6.46639 6.62211 6.91965 7.12864 7.63525 8.04274 9.01492 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.004638 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.768833 B = 6035.104192 C = 7021.633567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.096 0.904 4 C -0.122 4.122 5 C 0.138 3.862 6 N -0.612 5.612 7 C -0.231 4.231 8 H 0.060 0.940 9 C -0.030 4.030 10 N -0.953 5.953 11 Si 0.930 3.070 12 H -0.299 1.299 13 H -0.311 1.311 14 H -0.252 1.252 15 C 0.110 3.890 16 C 0.137 3.863 17 H 0.080 0.920 18 N -0.686 5.686 19 C 0.586 3.414 20 O -0.583 6.583 21 C -0.267 4.267 22 C -0.033 4.033 23 C -0.007 4.007 24 N -0.546 5.546 25 H 0.434 0.566 26 C 0.092 3.908 27 C -0.199 4.199 28 C -0.197 4.197 29 S 0.174 5.826 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.256 0.744 38 H 0.041 0.959 39 H 0.037 0.963 40 H 0.403 0.597 41 H 0.142 0.858 42 H 0.232 0.768 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -4.708 -1.023 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.114 0.886 4 C -0.161 4.161 5 C 0.014 3.986 6 N -0.336 5.336 7 C -0.360 4.360 8 H 0.078 0.922 9 C -0.224 4.224 10 N -0.599 5.599 11 Si 0.761 3.239 12 H -0.228 1.228 13 H -0.240 1.240 14 H -0.176 1.176 15 C -0.016 4.016 16 C 0.031 3.969 17 H 0.098 0.902 18 N -0.335 5.335 19 C 0.374 3.626 20 O -0.466 6.466 21 C -0.387 4.387 22 C -0.069 4.069 23 C -0.119 4.119 24 N -0.148 5.148 25 H 0.275 0.725 26 C -0.043 4.043 27 C -0.228 4.228 28 C -0.320 4.320 29 S 0.437 5.563 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.120 0.880 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.240 0.760 41 H 0.160 0.840 42 H 0.248 0.752 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -19.951 -3.970 -1.652 20.409 hybrid contribution 1.160 -0.116 2.650 2.895 sum -18.791 -4.086 0.998 19.256 Atomic orbital electron populations 1.21782 0.92980 1.01971 1.02767 1.21334 0.97082 0.99732 0.92445 0.88582 1.22016 0.95672 1.00291 0.98109 1.21225 0.93528 0.96968 0.86874 1.44410 1.48176 1.39845 1.01211 1.18811 1.08946 1.02730 1.05558 0.92231 1.25750 0.98493 0.98143 1.00059 1.69949 1.34533 1.23687 1.31760 0.86159 0.75014 0.83349 0.79416 1.22793 1.24023 1.17625 1.21737 0.94148 0.96693 0.89031 1.21523 0.93800 0.81308 1.00286 0.90181 1.45599 1.66094 1.13976 1.07869 1.17160 0.76686 0.84585 0.84194 1.90748 1.53551 1.70226 1.32097 1.23619 1.17463 0.98828 0.98775 1.19314 0.97785 0.90363 0.99484 1.17892 1.12384 0.90450 0.91220 1.42010 1.54790 1.07944 1.10102 0.72522 1.22733 0.98776 0.95708 0.87061 1.20579 1.11674 0.90865 0.99697 1.23650 1.11076 1.01291 0.96028 1.83425 1.66786 1.01038 1.05050 0.92688 0.93244 0.89977 0.92924 0.88031 0.94249 0.92143 0.93498 0.94169 0.94473 0.75950 0.84036 0.75216 0.81496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.05 71.99 0.65 -2.23 16 2 C -0.09 -2.31 2.48 -10.77 -0.03 -2.34 16 3 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 4 C -0.12 -3.27 5.20 30.67 0.16 -3.11 16 5 C 0.14 4.91 6.52 86.36 0.56 5.47 16 6 N -0.61 -28.59 2.69 -699.10 -1.88 -30.47 16 7 C -0.23 -13.22 10.03 84.04 0.84 -12.37 16 8 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 9 C -0.03 -1.82 5.23 84.86 0.44 -1.38 16 10 N -0.95 -62.73 13.97 21.65 0.30 -62.42 16 11 Si 0.93 50.65 24.35 68.60 1.67 52.32 16 12 H -0.30 -16.90 6.62 99.48 0.66 -16.25 16 13 H -0.31 -17.07 7.11 99.48 0.71 -16.36 16 14 H -0.25 -12.74 6.64 99.48 0.66 -12.08 16 15 C 0.11 5.03 3.80 86.36 0.33 5.36 16 16 C 0.14 5.01 2.24 45.07 0.10 5.11 16 17 H 0.08 2.98 7.58 -2.39 -0.02 2.96 16 18 N -0.69 -25.96 4.25 -446.37 -1.90 -27.86 16 19 C 0.59 24.98 7.74 86.37 0.67 25.65 16 20 O -0.58 -28.66 16.43 -4.46 -0.07 -28.73 16 21 C -0.27 -10.04 6.38 23.83 0.15 -9.89 16 22 C -0.03 -1.13 9.88 21.85 0.22 -0.91 16 23 C -0.01 -0.19 7.67 38.03 0.29 0.11 16 24 N -0.55 -9.86 6.21 -188.39 -1.17 -11.03 16 25 H 0.43 4.94 8.96 -92.71 -0.83 4.11 16 26 C 0.09 1.26 11.85 83.16 0.99 2.25 16 27 C -0.20 -3.98 10.85 22.25 0.24 -3.74 16 28 C -0.20 -5.60 7.31 23.11 0.17 -5.43 16 29 S 0.17 5.43 22.29 -56.49 -1.26 4.17 16 30 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.09 7.54 -2.39 -0.02 1.07 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.49 6.40 -2.39 -0.02 1.48 16 34 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 35 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 2.18 7.93 -2.39 -0.02 2.16 16 37 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 38 H 0.04 1.77 7.08 -2.38 -0.02 1.75 16 39 H 0.04 2.04 4.50 -2.39 -0.01 2.03 16 40 H 0.40 13.96 5.70 -92.70 -0.53 13.43 16 41 H 0.14 4.76 8.00 -2.91 -0.02 4.74 16 42 H 0.23 0.59 8.06 -2.91 -0.02 0.56 16 43 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -83.28 353.66 1.09 -82.19 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.39 Total: 19.29 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 5.79 Total: 2.55 kcal Atomic # 7 Polarization: -127.14 SS G_CDS: -4.64 Total: -131.78 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.07 Total: -28.73 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.67 Total: 52.32 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.26 Total: 4.17 kcal Total: -83.28 1.09 -82.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597247.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.854 kcal (2) G-P(sol) polarization free energy of solvation -83.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds