Wall clock time and date at job start Tue Mar 31 2020 18:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44818 * 2 1 4 4 C 1.53034 * 109.45814 * 240.03705 * 2 1 3 5 5 C 1.53196 * 109.31026 * 178.61482 * 4 2 1 6 6 N 1.46921 * 108.77580 * 54.63626 * 5 4 2 7 7 C 1.36938 * 120.63311 * 126.37026 * 6 5 4 8 8 H 1.07997 * 120.00111 * 207.68195 * 7 6 5 9 9 C 1.38811 * 119.99833 * 27.68388 * 7 6 5 10 10 N 1.31622 * 119.99967 * 17.36569 * 9 7 6 11 11 Si 1.86800 * 120.00071 * 197.35911 * 9 7 6 12 12 H 1.48508 * 109.46781 * 90.00150 * 11 9 7 13 13 H 1.48500 * 109.47543 * 209.99997 * 11 9 7 14 14 H 1.48500 * 109.47074 * 330.00617 * 11 9 7 15 15 C 1.46929 * 118.73531 * 306.38763 * 6 5 4 16 16 C 1.53037 * 109.45886 * 119.96364 * 2 1 3 17 17 H 1.09009 * 109.49512 * 61.43935 * 16 2 1 18 18 N 1.46496 * 109.50381 * 301.33865 * 16 2 1 19 19 C 1.34776 * 120.00297 * 155.15779 * 18 16 2 20 20 O 1.21734 * 119.99575 * 0.02562 * 19 18 16 21 21 C 1.46411 * 119.99973 * 180.02562 * 19 18 16 22 22 C 1.35780 * 124.95552 * 179.72459 * 21 19 18 23 23 C 1.38875 * 115.18350 * 179.82994 * 22 21 19 24 24 N 1.39742 * 139.91592 * 180.09671 * 23 22 21 25 25 H 0.97001 * 125.63524 * 0.35916 * 24 23 22 26 26 C 1.36213 * 108.73623 * 180.34269 * 24 23 22 27 27 C 1.34508 * 109.29386 * 359.97438 * 26 24 23 28 28 C 1.38238 * 113.39090 * 0.44749 * 23 22 21 29 29 S 1.75615 * 124.96216 * 0.02765 * 21 19 18 30 30 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47252 * 299.96503 * 1 2 3 32 32 H 1.09000 * 109.47309 * 59.96190 * 1 2 3 33 33 H 1.09000 * 109.50144 * 58.66490 * 4 2 1 34 34 H 1.09005 * 109.49923 * 298.56362 * 4 2 1 35 35 H 1.09002 * 109.58271 * 174.42173 * 5 4 2 36 36 H 1.08996 * 109.58535 * 294.70376 * 5 4 2 37 37 H 0.96998 * 119.99685 * 179.97438 * 10 9 7 38 38 H 1.09011 * 109.58372 * 173.39943 * 15 6 5 39 39 H 1.09005 * 109.58887 * 293.67697 * 15 6 5 40 40 H 0.96997 * 119.99435 * 335.16359 * 18 16 2 41 41 H 1.07999 * 122.40861 * 359.97438 * 22 21 19 42 42 H 1.07999 * 125.35564 * 180.02562 * 26 24 23 43 43 H 1.08005 * 126.07432 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6885 -1.2642 6 7 4.0678 -1.2488 -0.0001 7 6 4.9757 -2.2740 -0.0001 8 1 5.0085 -2.9662 0.8282 9 6 5.8538 -2.4233 -1.0647 10 7 6.0602 -1.4215 -1.8931 11 14 6.7429 -4.0460 -1.3216 12 1 5.9252 -4.9254 -2.1954 13 1 8.0576 -3.7939 -1.9644 14 1 6.9523 -4.7088 -0.0093 15 6 3.5713 -0.6885 1.2642 16 6 2.0398 -0.7207 1.2501 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0487 2.4460 19 6 1.4001 -0.7314 3.6012 20 8 1.7146 -1.9064 3.6510 21 6 0.8856 -0.0599 4.7962 22 6 0.7134 -0.6501 6.0069 23 6 0.2146 0.1791 7.0029 24 7 -0.1422 0.1331 8.3533 25 1 -0.0812 -0.6462 8.9277 26 6 -0.5894 1.3633 8.7298 27 6 -0.5339 2.1980 7.6765 28 6 -0.0283 1.4699 6.5719 29 16 0.3941 1.6244 4.8711 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8896 33 1 1.6572 -0.2206 -2.1398 34 1 1.6978 -1.7556 -1.2384 35 1 3.9416 -1.2844 -2.0985 36 1 3.9142 0.3408 -1.3698 37 1 6.6741 -1.5258 -2.6368 38 1 3.9417 -1.2845 2.0984 39 1 3.9164 0.3402 1.3686 40 1 1.2753 0.8876 2.4063 41 1 0.9497 -1.6891 6.1832 42 1 -0.9336 1.6274 9.7189 43 1 -0.8243 3.2383 7.6734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968597248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:10 Heat of formation + Delta-G solvation = 53.232479 kcal Electronic energy + Delta-G solvation = -25926.152834 eV Core-core repulsion = 22292.071783 eV Total energy + Delta-G solvation = -3634.081051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41647 -39.71874 -37.67959 -35.17558 -34.43560 -32.99247 -31.19175 -31.06272 -29.45306 -28.10846 -27.14209 -24.43308 -23.83714 -22.37513 -21.52269 -21.05324 -20.76714 -19.96056 -19.05376 -18.57973 -16.80409 -16.74758 -15.74331 -15.63009 -15.15023 -14.76650 -14.51600 -14.47479 -14.04163 -13.73111 -13.71205 -13.42121 -13.33877 -13.16573 -12.94198 -12.43322 -12.15382 -12.00231 -11.68214 -11.60441 -11.45043 -11.08209 -11.00004 -10.78467 -10.62656 -10.22640 -10.12041 -10.00269 -9.90755 -9.83523 -9.61297 -9.51505 -8.81687 -8.39897 -8.29605 -7.86027 -6.63761 -5.74463 -3.16315 0.42288 1.27956 1.82000 2.22419 2.41302 2.71521 3.34339 3.39794 3.43204 3.49587 3.52494 4.54536 4.62645 4.64600 4.79585 5.08020 5.18060 5.23733 5.32531 5.42236 5.50974 5.55608 5.63379 5.72532 5.81433 5.94872 6.00717 6.09638 6.20762 6.24619 6.26133 6.33558 6.47837 6.58405 6.65990 6.70110 6.77133 6.87185 7.03507 7.11617 7.39399 7.68831 7.70707 7.87381 8.37314 8.50416 9.26294 9.88511 10.44190 11.34278 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.002764 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.489124 B =10126.325538 C =10986.662720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.141 3.859 16 C 0.134 3.866 17 H 0.089 0.911 18 N -0.713 5.713 19 C 0.587 3.413 20 O -0.525 6.525 21 C -0.226 4.226 22 C -0.037 4.037 23 C 0.026 3.974 24 N -0.557 5.557 25 H 0.420 0.580 26 C 0.055 3.945 27 C -0.172 4.172 28 C -0.190 4.190 29 S 0.161 5.839 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.019 0.981 37 H 0.253 0.747 38 H 0.059 0.941 39 H 0.018 0.982 40 H 0.392 0.608 41 H 0.150 0.850 42 H 0.177 0.823 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.646 8.875 17.520 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.378 4.378 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.204 1.204 15 C 0.013 3.987 16 C 0.029 3.971 17 H 0.107 0.893 18 N -0.363 5.363 19 C 0.372 3.628 20 O -0.403 6.403 21 C -0.346 4.346 22 C -0.072 4.072 23 C -0.088 4.088 24 N -0.158 5.158 25 H 0.257 0.743 26 C -0.079 4.079 27 C -0.201 4.201 28 C -0.312 4.312 29 S 0.423 5.577 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.226 0.774 41 H 0.167 0.833 42 H 0.194 0.806 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.283 9.049 16.389 24.812 hybrid contribution 0.396 -1.716 1.244 2.157 sum -15.887 7.333 17.634 24.842 Atomic orbital electron populations 1.21864 0.95950 1.01635 1.00801 1.21316 0.94630 0.99725 0.95409 0.91399 1.22246 1.00655 0.99560 0.94800 1.20851 0.87327 0.97363 0.90372 1.43993 1.48104 1.39758 0.99101 1.19240 1.09668 1.02762 1.06165 0.91522 1.25015 0.97237 0.97506 0.99903 1.70043 1.37872 1.28960 1.18004 0.86271 0.78690 0.83722 0.78033 1.21432 1.21817 1.20384 1.21201 0.89960 0.96789 0.90730 1.21823 0.96794 0.96978 0.81521 0.89298 1.45976 1.65878 1.14009 1.10393 1.16808 0.78111 0.86141 0.81753 1.90871 1.49955 1.15285 1.84192 1.23878 1.13995 0.98417 0.98357 1.19252 0.98441 1.00433 0.89102 1.18007 1.09894 0.94979 0.85913 1.41906 1.54122 1.11865 1.07934 0.74283 1.21855 1.02354 0.83727 0.99941 1.20126 1.09856 1.00037 0.90112 1.23181 1.11256 0.97845 0.98895 1.83697 1.64988 1.06695 1.02278 0.92868 0.93382 0.92869 0.92658 0.92383 0.89222 0.96289 0.93692 0.92290 0.96367 0.77374 0.83280 0.80560 0.83573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.02 37.16 0.34 -1.61 16 2 C -0.09 -1.50 2.27 -90.58 -0.21 -1.70 16 3 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.13 -2.49 5.36 -26.61 -0.14 -2.63 16 5 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 6 N -0.59 -15.08 2.99 -172.32 -0.52 -15.59 16 7 C -0.25 -7.07 9.59 -15.06 -0.14 -7.21 16 8 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 10 N -0.90 -26.50 11.19 55.49 0.62 -25.88 16 11 Si 0.90 22.30 29.59 -169.99 -5.03 17.27 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.14 3.14 6.09 -3.71 -0.02 3.12 16 16 C 0.13 2.46 2.06 -67.82 -0.14 2.32 16 17 H 0.09 1.86 7.58 -51.92 -0.39 1.46 16 18 N -0.71 -11.04 4.36 -55.08 -0.24 -11.28 16 19 C 0.59 9.79 7.74 -12.97 -0.10 9.69 16 20 O -0.53 -10.76 16.44 5.16 0.08 -10.68 16 21 C -0.23 -3.11 6.38 -37.17 -0.24 -3.35 16 22 C -0.04 -0.46 9.88 -40.23 -0.40 -0.86 16 23 C 0.03 0.29 7.67 -84.02 -0.64 -0.36 16 24 N -0.56 -4.15 6.21 -10.90 -0.07 -4.22 16 25 H 0.42 1.85 8.96 -40.82 -0.37 1.49 16 26 C 0.05 0.35 11.85 -16.92 -0.20 0.15 16 27 C -0.17 -1.45 10.85 -39.61 -0.43 -1.88 16 28 C -0.19 -2.10 7.31 -38.29 -0.28 -2.38 16 29 S 0.16 1.79 22.29 -107.50 -2.40 -0.60 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.58 7.35 -51.93 -0.38 0.20 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.06 1.41 7.93 -51.92 -0.41 1.00 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.39 5.07 7.36 -40.82 -0.30 4.77 16 41 H 0.15 1.81 8.00 -52.49 -0.42 1.39 16 42 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 43 H 0.15 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 363.22 15.07 5.47 5.47 Total: -1.00 -33.86 363.22 -10.73 -44.59 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.94 Total: 3.73 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.71 Total: -2.82 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.20 Total: -56.97 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.08 Total: -10.68 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.40 Total: -0.60 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.86 -10.73 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.818 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds