Wall clock time and date at job start Tue Mar 31 2020 18:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.44818 * 2 1 4 4 C 1.53034 * 109.45814 * 240.03705 * 2 1 3 5 5 C 1.53196 * 109.31026 * 178.61482 * 4 2 1 6 6 N 1.46921 * 108.77580 * 54.63626 * 5 4 2 7 7 C 1.36938 * 120.63311 * 126.37026 * 6 5 4 8 8 H 1.07997 * 120.00111 * 207.68195 * 7 6 5 9 9 C 1.38811 * 119.99833 * 27.68388 * 7 6 5 10 10 N 1.31622 * 119.99967 * 17.36569 * 9 7 6 11 11 Si 1.86800 * 120.00071 * 197.35911 * 9 7 6 12 12 H 1.48508 * 109.46781 * 90.00150 * 11 9 7 13 13 H 1.48500 * 109.47543 * 209.99997 * 11 9 7 14 14 H 1.48500 * 109.47074 * 330.00617 * 11 9 7 15 15 C 1.46929 * 118.73531 * 306.38763 * 6 5 4 16 16 C 1.53037 * 109.45886 * 119.96364 * 2 1 3 17 17 H 1.09009 * 109.49512 * 61.43935 * 16 2 1 18 18 N 1.46496 * 109.50381 * 301.33865 * 16 2 1 19 19 C 1.34776 * 120.00297 * 155.15779 * 18 16 2 20 20 O 1.21734 * 119.99575 * 0.02562 * 19 18 16 21 21 C 1.46411 * 119.99973 * 180.02562 * 19 18 16 22 22 C 1.35780 * 124.95552 * 179.72459 * 21 19 18 23 23 C 1.38875 * 115.18350 * 179.82994 * 22 21 19 24 24 N 1.39742 * 139.91592 * 180.09671 * 23 22 21 25 25 H 0.97001 * 125.63524 * 0.35916 * 24 23 22 26 26 C 1.36213 * 108.73623 * 180.34269 * 24 23 22 27 27 C 1.34508 * 109.29386 * 359.97438 * 26 24 23 28 28 C 1.38238 * 113.39090 * 0.44749 * 23 22 21 29 29 S 1.75615 * 124.96216 * 0.02765 * 21 19 18 30 30 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47252 * 299.96503 * 1 2 3 32 32 H 1.09000 * 109.47309 * 59.96190 * 1 2 3 33 33 H 1.09000 * 109.50144 * 58.66490 * 4 2 1 34 34 H 1.09005 * 109.49923 * 298.56362 * 4 2 1 35 35 H 1.09002 * 109.58271 * 174.42173 * 5 4 2 36 36 H 1.08996 * 109.58535 * 294.70376 * 5 4 2 37 37 H 0.96998 * 119.99685 * 179.97438 * 10 9 7 38 38 H 1.09011 * 109.58372 * 173.39943 * 15 6 5 39 39 H 1.09005 * 109.58887 * 293.67697 * 15 6 5 40 40 H 0.96997 * 119.99435 * 335.16359 * 18 16 2 41 41 H 1.07999 * 122.40861 * 359.97438 * 22 21 19 42 42 H 1.07999 * 125.35564 * 180.02562 * 26 24 23 43 43 H 1.08005 * 126.07432 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 3.5713 -0.6885 -1.2642 6 7 4.0678 -1.2488 -0.0001 7 6 4.9757 -2.2740 -0.0001 8 1 5.0085 -2.9662 0.8282 9 6 5.8538 -2.4233 -1.0647 10 7 6.0602 -1.4215 -1.8931 11 14 6.7429 -4.0460 -1.3216 12 1 5.9252 -4.9254 -2.1954 13 1 8.0576 -3.7939 -1.9644 14 1 6.9523 -4.7088 -0.0093 15 6 3.5713 -0.6885 1.2642 16 6 2.0398 -0.7207 1.2501 17 1 1.6978 -1.7557 1.2383 18 7 1.5256 -0.0487 2.4460 19 6 1.4001 -0.7314 3.6012 20 8 1.7146 -1.9064 3.6510 21 6 0.8856 -0.0599 4.7962 22 6 0.7134 -0.6501 6.0069 23 6 0.2146 0.1791 7.0029 24 7 -0.1422 0.1331 8.3533 25 1 -0.0812 -0.6462 8.9277 26 6 -0.5894 1.3633 8.7298 27 6 -0.5339 2.1980 7.6765 28 6 -0.0283 1.4699 6.5719 29 16 0.3941 1.6244 4.8711 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8896 33 1 1.6572 -0.2206 -2.1398 34 1 1.6978 -1.7556 -1.2384 35 1 3.9416 -1.2844 -2.0985 36 1 3.9142 0.3408 -1.3698 37 1 6.6741 -1.5258 -2.6368 38 1 3.9417 -1.2845 2.0984 39 1 3.9164 0.3402 1.3686 40 1 1.2753 0.8876 2.4063 41 1 0.9497 -1.6891 6.1832 42 1 -0.9336 1.6274 9.7189 43 1 -0.8243 3.2383 7.6734 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968597248.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:09 Heat of formation + Delta-G solvation = 31.088341 kcal Electronic energy + Delta-G solvation = -25927.113076 eV Core-core repulsion = 22292.071783 eV Total energy + Delta-G solvation = -3635.041293 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11804 -41.11385 -39.24513 -36.31133 -35.97624 -34.53911 -33.04617 -31.85517 -30.94304 -29.31840 -28.63002 -26.02157 -25.20566 -23.69105 -22.75364 -22.44844 -21.62482 -21.38701 -20.39650 -19.41144 -18.72893 -17.84093 -17.25637 -16.73586 -16.46980 -16.28816 -15.69938 -15.58635 -15.42841 -15.21294 -15.08573 -14.90618 -14.54636 -14.36186 -14.15396 -13.66688 -13.58611 -13.22178 -13.14407 -12.96480 -12.76569 -12.69804 -12.51887 -12.30195 -12.04116 -11.98678 -11.95630 -11.68779 -11.48737 -11.28416 -11.09470 -10.66174 -10.61292 -10.21017 -9.13559 -8.71593 -8.60830 -7.91457 -5.36974 -0.50835 0.42471 0.95122 1.38398 1.43789 1.45011 1.54579 1.74038 1.89021 2.15840 2.28865 2.50322 3.22281 3.61326 3.71173 3.81779 3.96473 3.99327 4.09705 4.17351 4.22812 4.42654 4.49114 4.56816 4.64203 4.75170 4.76350 4.91310 4.94135 4.97689 5.02245 5.05683 5.08982 5.16527 5.20547 5.40802 5.44472 5.53042 5.57319 5.61992 5.76495 5.80257 6.35400 6.43428 6.61365 7.09322 7.12832 7.80548 8.31109 9.14369 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.020074 B = 0.002764 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.489124 B =10126.325538 C =10986.662720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 H 0.081 0.919 4 C -0.121 4.121 5 C 0.171 3.829 6 N -0.605 5.605 7 C -0.268 4.268 8 H 0.053 0.947 9 C -0.044 4.044 10 N -0.929 5.929 11 Si 0.966 3.034 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.144 3.856 16 C 0.151 3.849 17 H 0.061 0.939 18 N -0.701 5.701 19 C 0.588 3.412 20 O -0.576 6.576 21 C -0.268 4.268 22 C -0.026 4.026 23 C -0.007 4.007 24 N -0.547 5.547 25 H 0.434 0.566 26 C 0.090 3.910 27 C -0.198 4.198 28 C -0.196 4.196 29 S 0.184 5.816 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.006 0.994 37 H 0.253 0.747 38 H 0.030 0.970 39 H 0.020 0.980 40 H 0.408 0.592 41 H 0.142 0.858 42 H 0.227 0.773 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.011 10.616 19.585 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.103 4.103 3 H 0.099 0.901 4 C -0.161 4.161 5 C 0.046 3.954 6 N -0.329 5.329 7 C -0.398 4.398 8 H 0.070 0.930 9 C -0.239 4.239 10 N -0.574 5.574 11 Si 0.794 3.206 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.201 1.201 15 C 0.017 3.983 16 C 0.045 3.955 17 H 0.079 0.921 18 N -0.351 5.351 19 C 0.375 3.625 20 O -0.457 6.457 21 C -0.387 4.387 22 C -0.063 4.063 23 C -0.120 4.120 24 N -0.150 5.150 25 H 0.275 0.725 26 C -0.045 4.045 27 C -0.227 4.227 28 C -0.319 4.319 29 S 0.447 5.553 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.038 0.962 40 H 0.245 0.755 41 H 0.160 0.840 42 H 0.244 0.756 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.676 10.814 18.461 28.399 hybrid contribution 1.098 -2.171 0.849 2.577 sum -17.578 8.643 19.310 27.505 Atomic orbital electron populations 1.21786 0.92868 1.01855 1.02848 1.21256 0.97038 0.99403 0.92624 0.90117 1.22077 0.96655 0.99879 0.97479 1.20735 0.90689 0.95500 0.88475 1.44211 1.48270 1.39705 1.00731 1.19397 1.10622 1.03602 1.06197 0.92966 1.25724 0.98080 1.00539 0.99604 1.70171 1.38440 1.30505 1.18287 0.85289 0.77531 0.79879 0.77882 1.20786 1.21408 1.20084 1.21215 0.92757 0.95804 0.88557 1.21335 0.93818 0.96457 0.83898 0.92056 1.45725 1.65410 1.14611 1.09386 1.17222 0.77042 0.85611 0.82578 1.90832 1.52284 1.17535 1.85081 1.23495 1.17346 1.00412 0.97493 1.19342 0.97115 1.00363 0.89474 1.17914 1.11806 0.94783 0.87470 1.42061 1.53044 1.13137 1.06714 0.72549 1.22717 0.98384 0.82184 1.01200 1.20571 1.10931 1.01509 0.89678 1.23633 1.10614 0.98444 0.99181 1.83408 1.64747 1.04188 1.02944 0.93599 0.91683 0.90488 0.89610 0.93402 0.92494 0.97636 0.93806 0.95164 0.96168 0.75513 0.83985 0.75643 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.02 71.98 0.65 -2.67 16 2 C -0.08 -2.67 2.27 -10.77 -0.02 -2.69 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.12 -4.51 5.36 30.67 0.16 -4.35 16 5 C 0.17 8.39 5.31 86.36 0.46 8.85 16 6 N -0.61 -32.58 2.99 -699.08 -2.09 -34.68 16 7 C -0.27 -15.96 9.59 84.03 0.81 -15.15 16 8 H 0.05 3.18 7.89 -2.91 -0.02 3.16 16 9 C -0.04 -2.54 4.91 84.86 0.42 -2.13 16 10 N -0.93 -56.04 11.19 21.65 0.24 -55.80 16 11 Si 0.97 47.11 29.59 68.60 2.03 49.14 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 14 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 15 C 0.14 6.74 6.09 86.36 0.53 7.26 16 16 C 0.15 5.72 2.06 45.07 0.09 5.81 16 17 H 0.06 2.70 7.58 -2.38 -0.02 2.68 16 18 N -0.70 -22.10 4.36 -446.37 -1.95 -24.05 16 19 C 0.59 20.51 7.74 86.37 0.67 21.18 16 20 O -0.58 -25.25 16.44 -4.46 -0.07 -25.32 16 21 C -0.27 -7.52 6.38 23.83 0.15 -7.37 16 22 C -0.03 -0.68 9.88 21.85 0.22 -0.46 16 23 C -0.01 -0.14 7.67 38.03 0.29 0.15 16 24 N -0.55 -6.44 6.21 -188.39 -1.17 -7.61 16 25 H 0.43 2.50 8.96 -92.71 -0.83 1.67 16 26 C 0.09 0.71 11.85 83.16 0.99 1.70 16 27 C -0.20 -2.61 10.85 22.25 0.24 -2.37 16 28 C -0.20 -3.94 7.31 23.11 0.17 -3.77 16 29 S 0.18 3.93 22.29 -56.49 -1.26 2.67 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.38 7.35 -2.39 -0.02 1.37 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.06 3.15 6.04 -2.39 -0.01 3.14 16 36 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.03 1.55 7.93 -2.38 -0.02 1.53 16 39 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.41 10.26 7.36 -92.71 -0.68 9.58 16 41 H 0.14 3.68 8.00 -2.91 -0.02 3.65 16 42 H 0.23 -0.51 8.06 -2.91 -0.02 -0.53 16 43 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 Total: -1.00 -78.64 363.22 1.08 -77.56 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -0.46 Total: 14.10 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.81 Total: 3.98 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -4.97 Total: -122.13 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.26 Total: 2.67 kcal Total: -78.64 1.08 -77.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968597248.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.652 kcal (2) G-P(sol) polarization free energy of solvation -78.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds