Wall clock time and date at job start Tue Mar 31 2020 18:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.58449 * 2 1 4 4 C 1.53194 * 109.70336 * 120.34743 * 2 1 3 5 5 H 1.09012 * 109.49312 * 54.54428 * 4 2 1 6 6 N 1.46500 * 109.50263 * 294.47955 * 4 2 1 7 7 C 1.34771 * 120.00346 * 154.99787 * 6 4 2 8 8 O 1.21727 * 119.99904 * 359.97438 * 7 6 4 9 9 C 1.46486 * 120.00336 * 180.02562 * 7 6 4 10 10 C 1.36112 * 125.71439 * 179.71288 * 9 7 6 11 11 C 1.42230 * 107.62563 * 179.90370 * 10 9 7 12 12 C 1.45593 * 140.77609 * 180.02562 * 11 10 9 13 13 C 1.31815 * 114.63143 * 180.30266 * 12 11 10 14 14 S 1.75354 * 111.24453 * 0.03583 * 13 12 11 15 15 C 1.38171 * 106.99756 * 0.35877 * 11 10 9 16 16 N 1.37465 * 108.16547 * 359.78250 * 15 11 10 17 17 H 0.97003 * 125.67705 * 179.97438 * 16 15 11 18 18 C 1.53036 * 109.31416 * 174.49074 * 4 2 1 19 19 C 1.53038 * 109.53889 * 298.64025 * 18 4 2 20 20 C 1.52761 * 109.38433 * 61.23692 * 19 18 4 21 21 N 1.46918 * 109.58922 * 239.71339 * 2 1 3 22 22 C 1.36939 * 120.62930 * 6.43649 * 21 2 1 23 23 H 1.07996 * 120.00148 * 330.55170 * 22 21 2 24 24 C 1.38810 * 120.00236 * 150.55189 * 22 21 2 25 25 N 1.31625 * 119.99732 * 344.42122 * 24 22 21 26 26 Si 1.86792 * 120.00377 * 164.41831 * 24 22 21 27 27 H 1.48506 * 109.47101 * 266.31578 * 26 24 22 28 28 H 1.48495 * 109.47126 * 26.31329 * 26 24 22 29 29 H 1.48497 * 109.47394 * 146.31947 * 26 24 22 30 30 H 1.08993 * 109.47227 * 180.28626 * 1 2 3 31 31 H 1.09007 * 109.47057 * 300.29044 * 1 2 3 32 32 H 1.08997 * 109.47098 * 60.28684 * 1 2 3 33 33 H 0.97006 * 119.99614 * 334.99671 * 6 4 2 34 34 H 1.07999 * 126.18592 * 0.04454 * 10 9 7 35 35 H 1.08003 * 122.68586 * 0.28059 * 12 11 10 36 36 H 1.07997 * 124.37607 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.45884 * 58.65929 * 18 4 2 38 38 H 1.08996 * 109.46188 * 178.63182 * 18 4 2 39 39 H 1.09005 * 109.49725 * 181.31413 * 19 18 4 40 40 H 1.09003 * 109.49808 * 301.37997 * 19 18 4 41 41 H 1.09001 * 109.51243 * 185.70529 * 20 19 18 42 42 H 1.09003 * 109.43084 * 65.42740 * 20 19 18 43 43 H 0.97001 * 120.00000 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7287 1.2446 5 1 1.6079 -1.7256 1.2907 6 7 1.6727 0.0258 2.4435 7 6 1.5520 -0.6067 3.6274 8 8 1.7531 -1.8050 3.7006 9 6 1.1776 0.1477 4.8260 10 6 1.0180 -0.3717 6.0740 11 6 0.6574 0.6959 6.9419 12 6 0.3327 0.9545 8.3374 13 6 0.0509 2.2126 8.6119 14 16 0.1550 3.2148 7.1767 15 6 0.6031 1.8418 6.1717 16 7 0.9217 1.5040 4.8778 17 1 0.9599 2.1162 4.1263 18 6 3.5705 -0.8442 1.1675 19 6 3.9601 -1.6607 -0.0668 20 6 3.4647 -0.9475 -1.3236 21 7 2.0226 -0.6981 -1.1952 22 6 1.1533 -1.1135 -2.1684 23 1 0.1386 -1.3771 -1.9094 24 6 1.5765 -1.1957 -3.4879 25 7 2.6881 -0.5977 -3.8610 26 14 0.5684 -2.1550 -4.7340 27 1 1.0849 -3.5444 -4.8242 28 1 -0.8530 -2.1821 -4.3052 29 1 0.6722 -1.5012 -6.0633 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5184 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5120 0.9807 2.3851 34 1 1.1447 -1.4067 6.3550 35 1 0.3230 0.1776 9.0876 36 1 -0.2104 2.5787 9.5937 37 1 4.0071 0.1520 1.0965 38 1 3.9429 -1.3408 2.0635 39 1 5.0446 -1.7624 -0.1083 40 1 3.5041 -2.6490 -0.0081 41 1 3.6509 -1.5747 -2.1954 42 1 3.9912 0.0006 -1.4338 43 1 2.9836 -0.6549 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993647209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:15 Heat of formation + Delta-G solvation = 53.883732 kcal Electronic energy + Delta-G solvation = -26082.261965 eV Core-core repulsion = 22448.209155 eV Total energy + Delta-G solvation = -3634.052811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.50455 -39.49038 -37.63134 -35.58903 -34.43822 -32.65585 -31.76086 -30.67679 -29.70173 -28.37649 -26.28760 -25.07893 -23.70245 -23.08564 -21.55644 -20.78195 -20.28844 -19.91170 -19.38524 -19.02822 -16.87111 -16.47478 -15.80227 -15.42657 -15.25215 -15.02264 -14.76513 -14.35625 -14.24330 -13.82778 -13.69279 -13.64719 -13.37364 -12.99053 -12.82955 -12.60874 -12.10767 -11.91803 -11.77390 -11.60674 -11.18819 -11.09635 -10.96304 -10.81830 -10.62924 -10.37637 -10.25210 -10.09787 -10.07421 -9.73660 -9.72378 -9.45118 -8.84163 -8.53439 -8.49584 -7.91463 -6.72889 -5.84255 -3.29274 0.80578 1.07453 1.21923 1.71225 2.68175 2.86478 3.15349 3.35073 3.36717 3.42801 3.43387 4.41094 4.46636 4.66152 4.79959 5.16957 5.22502 5.30391 5.36786 5.45038 5.49146 5.52872 5.71431 5.84343 5.87880 5.95976 5.99467 6.13606 6.18300 6.26277 6.32962 6.45197 6.47736 6.52889 6.63318 6.69705 6.78003 6.89618 6.91224 6.99395 7.34857 7.55856 7.61801 7.77545 8.19729 8.39852 9.15101 9.77453 10.33623 11.24509 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002463 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.457240 B =11365.063676 C =11710.359607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.026 0.974 4 C 0.131 3.869 5 H 0.090 0.910 6 N -0.715 5.715 7 C 0.584 3.416 8 O -0.523 6.523 9 C -0.001 4.001 10 C -0.073 4.073 11 C -0.163 4.163 12 C -0.069 4.069 13 C -0.224 4.224 14 S 0.129 5.871 15 C -0.011 4.011 16 N -0.525 5.525 17 H 0.421 0.579 18 C -0.117 4.117 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.254 4.254 23 H 0.071 0.929 24 C 0.005 3.995 25 N -0.901 5.901 26 Si 0.903 3.097 27 H -0.287 1.287 28 H -0.278 1.278 29 H -0.291 1.291 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.390 0.610 34 H 0.157 0.843 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.019 0.981 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.127 7.553 21.965 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.025 3.975 5 H 0.108 0.892 6 N -0.365 5.365 7 C 0.370 3.630 8 O -0.399 6.399 9 C -0.114 4.114 10 C -0.101 4.101 11 C -0.176 4.176 12 C -0.099 4.099 13 C -0.358 4.358 14 S 0.383 5.617 15 C -0.239 4.239 16 N -0.128 5.128 17 H 0.259 0.741 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.044 3.956 21 N -0.304 5.304 22 C -0.383 4.383 23 H 0.088 0.912 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.733 3.267 27 H -0.214 1.214 28 H -0.204 1.204 29 H -0.218 1.218 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.223 0.777 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.187 0.813 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.037 0.963 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.117 8.220 21.374 23.112 hybrid contribution -0.226 -1.057 -0.783 1.334 sum -3.342 7.163 20.592 22.057 Atomic orbital electron populations 1.21824 0.95608 1.01817 1.00196 1.20551 0.93243 0.93527 0.86674 0.95605 1.21890 0.95335 0.96974 0.83263 0.89182 1.46065 1.70009 1.11808 1.08576 1.16948 0.77688 0.86764 0.81637 1.90876 1.50670 1.13453 1.84912 1.20243 1.12629 0.82007 0.96502 1.20743 1.01333 0.98736 0.89271 1.19391 1.11971 0.92993 0.93224 1.20343 0.99355 0.96509 0.93710 1.24860 1.12334 0.96796 1.01790 1.83934 1.74906 1.05333 0.97561 1.23554 1.11043 1.00353 0.88988 1.41447 1.56596 1.07897 1.06875 0.74085 1.21768 0.95118 1.00148 0.98563 1.22114 0.99370 0.99769 0.96728 1.20750 0.83076 0.97261 0.94540 1.44014 1.03168 1.65057 1.18164 1.19174 0.95132 1.37970 0.86066 0.91158 1.25089 0.97896 0.99415 0.96973 1.70033 1.24057 1.43633 1.16796 0.86275 0.79815 0.79837 0.80821 1.21384 1.20354 1.21781 0.92519 0.94544 0.91606 0.77723 0.82551 0.83754 0.81297 0.92770 0.92997 0.92848 0.92411 0.89395 0.96301 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.84 37.16 0.29 -2.17 16 2 C 0.17 3.26 3.03 -67.60 -0.20 3.06 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.13 2.28 2.00 -67.81 -0.14 2.15 16 5 H 0.09 1.82 7.58 -51.92 -0.39 1.43 16 6 N -0.72 -10.03 4.59 -55.05 -0.25 -10.28 16 7 C 0.58 8.80 7.75 -12.94 -0.10 8.69 16 8 O -0.52 -9.77 16.51 5.17 0.09 -9.68 16 9 C 0.00 -0.01 6.97 -82.47 -0.57 -0.58 16 10 C -0.07 -0.91 10.58 -38.81 -0.41 -1.32 16 11 C -0.16 -1.84 6.80 -105.46 -0.72 -2.56 16 12 C -0.07 -0.60 10.42 -38.55 -0.40 -1.00 16 13 C -0.22 -1.66 11.03 28.84 0.32 -1.34 16 14 S 0.13 1.05 23.24 -107.50 -2.50 -1.45 16 15 C -0.01 -0.11 8.41 -15.05 -0.13 -0.24 16 16 N -0.52 -5.36 6.08 -7.94 -0.05 -5.41 16 17 H 0.42 3.18 8.14 -40.82 -0.33 2.85 16 18 C -0.12 -2.06 5.46 -26.69 -0.15 -2.20 16 19 C -0.14 -2.70 6.06 -26.83 -0.16 -2.86 16 20 C 0.17 3.92 5.26 -3.94 -0.02 3.90 16 21 N -0.58 -13.82 2.99 -165.04 -0.49 -14.31 16 22 C -0.25 -6.63 8.57 -15.06 -0.13 -6.76 16 23 H 0.07 1.81 6.23 -52.49 -0.33 1.48 16 24 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 25 N -0.90 -25.41 11.23 55.49 0.62 -24.79 16 26 Si 0.90 21.30 29.58 -169.99 -5.03 16.28 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.06 1.08 7.43 -51.93 -0.39 0.69 16 31 H 0.04 0.53 7.81 -51.93 -0.41 0.13 16 32 H 0.06 1.27 7.63 -51.93 -0.40 0.87 16 33 H 0.39 4.34 7.68 -40.82 -0.31 4.03 16 34 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 2.29 6.14 -51.93 -0.32 1.97 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -31.14 360.63 -10.60 -41.73 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.81 Total: 5.67 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -2.61 Total: -3.19 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.17 Total: -54.79 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.14 -10.60 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.617 kcal (2) G-P(sol) polarization free energy of solvation -31.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds