Wall clock time and date at job start Tue Mar 31 2020 18:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.58449 * 2 1 4 4 C 1.53194 * 109.70336 * 120.34743 * 2 1 3 5 5 H 1.09012 * 109.49312 * 54.54428 * 4 2 1 6 6 N 1.46500 * 109.50263 * 294.47955 * 4 2 1 7 7 C 1.34771 * 120.00346 * 154.99787 * 6 4 2 8 8 O 1.21727 * 119.99904 * 359.97438 * 7 6 4 9 9 C 1.46486 * 120.00336 * 180.02562 * 7 6 4 10 10 C 1.36112 * 125.71439 * 179.71288 * 9 7 6 11 11 C 1.42230 * 107.62563 * 179.90370 * 10 9 7 12 12 C 1.45593 * 140.77609 * 180.02562 * 11 10 9 13 13 C 1.31815 * 114.63143 * 180.30266 * 12 11 10 14 14 S 1.75354 * 111.24453 * 0.03583 * 13 12 11 15 15 C 1.38171 * 106.99756 * 0.35877 * 11 10 9 16 16 N 1.37465 * 108.16547 * 359.78250 * 15 11 10 17 17 H 0.97003 * 125.67705 * 179.97438 * 16 15 11 18 18 C 1.53036 * 109.31416 * 174.49074 * 4 2 1 19 19 C 1.53038 * 109.53889 * 298.64025 * 18 4 2 20 20 C 1.52761 * 109.38433 * 61.23692 * 19 18 4 21 21 N 1.46918 * 109.58922 * 239.71339 * 2 1 3 22 22 C 1.36939 * 120.62930 * 6.43649 * 21 2 1 23 23 H 1.07996 * 120.00148 * 330.55170 * 22 21 2 24 24 C 1.38810 * 120.00236 * 150.55189 * 22 21 2 25 25 N 1.31625 * 119.99732 * 344.42122 * 24 22 21 26 26 Si 1.86792 * 120.00377 * 164.41831 * 24 22 21 27 27 H 1.48506 * 109.47101 * 266.31578 * 26 24 22 28 28 H 1.48495 * 109.47126 * 26.31329 * 26 24 22 29 29 H 1.48497 * 109.47394 * 146.31947 * 26 24 22 30 30 H 1.08993 * 109.47227 * 180.28626 * 1 2 3 31 31 H 1.09007 * 109.47057 * 300.29044 * 1 2 3 32 32 H 1.08997 * 109.47098 * 60.28684 * 1 2 3 33 33 H 0.97006 * 119.99614 * 334.99671 * 6 4 2 34 34 H 1.07999 * 126.18592 * 0.04454 * 10 9 7 35 35 H 1.08003 * 122.68586 * 0.28059 * 12 11 10 36 36 H 1.07997 * 124.37607 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.45884 * 58.65929 * 18 4 2 38 38 H 1.08996 * 109.46188 * 178.63182 * 18 4 2 39 39 H 1.09005 * 109.49725 * 181.31413 * 19 18 4 40 40 H 1.09003 * 109.49808 * 301.37997 * 19 18 4 41 41 H 1.09001 * 109.51243 * 185.70529 * 20 19 18 42 42 H 1.09003 * 109.43084 * 65.42740 * 20 19 18 43 43 H 0.97001 * 120.00000 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7287 1.2446 5 1 1.6079 -1.7256 1.2907 6 7 1.6727 0.0258 2.4435 7 6 1.5520 -0.6067 3.6274 8 8 1.7531 -1.8050 3.7006 9 6 1.1776 0.1477 4.8260 10 6 1.0180 -0.3717 6.0740 11 6 0.6574 0.6959 6.9419 12 6 0.3327 0.9545 8.3374 13 6 0.0509 2.2126 8.6119 14 16 0.1550 3.2148 7.1767 15 6 0.6031 1.8418 6.1717 16 7 0.9217 1.5040 4.8778 17 1 0.9599 2.1162 4.1263 18 6 3.5705 -0.8442 1.1675 19 6 3.9601 -1.6607 -0.0668 20 6 3.4647 -0.9475 -1.3236 21 7 2.0226 -0.6981 -1.1952 22 6 1.1533 -1.1135 -2.1684 23 1 0.1386 -1.3771 -1.9094 24 6 1.5765 -1.1957 -3.4879 25 7 2.6881 -0.5977 -3.8610 26 14 0.5684 -2.1550 -4.7340 27 1 1.0849 -3.5444 -4.8242 28 1 -0.8530 -2.1821 -4.3052 29 1 0.6722 -1.5012 -6.0633 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5184 0.8874 32 1 -0.3633 0.5094 -0.8925 33 1 1.5120 0.9807 2.3851 34 1 1.1447 -1.4067 6.3550 35 1 0.3230 0.1776 9.0876 36 1 -0.2104 2.5787 9.5937 37 1 4.0071 0.1520 1.0965 38 1 3.9429 -1.3408 2.0635 39 1 5.0446 -1.7624 -0.1083 40 1 3.5041 -2.6490 -0.0081 41 1 3.6509 -1.5747 -2.1954 42 1 3.9912 0.0006 -1.4338 43 1 2.9836 -0.6549 -4.7831 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993647209.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:14 Heat of formation + Delta-G solvation = 34.739423 kcal Electronic energy + Delta-G solvation = -26083.092125 eV Core-core repulsion = 22448.209155 eV Total energy + Delta-G solvation = -3634.882970 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.39677 -40.77945 -39.15787 -36.32641 -35.96560 -34.31674 -33.46306 -31.54685 -31.26592 -29.41724 -27.85499 -26.89313 -24.89026 -23.92901 -22.97361 -22.36798 -21.39303 -21.12427 -20.37848 -20.12011 -18.31510 -17.80636 -17.37076 -16.75493 -16.45512 -15.99107 -15.69562 -15.62207 -15.47764 -15.44722 -15.15624 -14.91317 -14.54984 -14.45272 -14.32387 -13.73861 -13.37804 -13.28810 -12.84993 -12.79099 -12.74492 -12.60258 -12.56583 -12.40191 -12.02162 -11.87591 -11.80944 -11.74438 -11.68206 -11.34081 -11.12215 -10.56096 -10.54143 -10.16215 -9.27910 -8.67782 -8.63315 -7.87433 -5.33701 0.09522 0.20068 0.44173 1.08594 1.45712 1.48490 1.55836 1.83352 1.90132 2.12370 2.32398 2.51938 3.28324 3.52098 3.66497 3.83040 3.86218 3.98691 4.03666 4.17378 4.33054 4.42381 4.48952 4.57885 4.64997 4.73064 4.78399 4.85144 4.87660 5.00974 5.10321 5.12712 5.14698 5.20171 5.26561 5.39558 5.43157 5.44426 5.55683 5.65334 5.69323 5.74709 6.13806 6.40198 6.43679 7.03318 7.15152 7.84547 8.35987 9.19688 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002463 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.457240 B =11365.063676 C =11710.359607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.035 0.965 4 C 0.147 3.853 5 H 0.063 0.937 6 N -0.703 5.703 7 C 0.589 3.411 8 O -0.564 6.564 9 C -0.015 4.015 10 C -0.082 4.082 11 C -0.182 4.182 12 C -0.087 4.087 13 C -0.212 4.212 14 S 0.157 5.843 15 C -0.021 4.021 16 N -0.516 5.516 17 H 0.432 0.568 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.599 5.599 22 C -0.254 4.254 23 H 0.072 0.928 24 C -0.047 4.047 25 N -0.932 5.932 26 Si 0.960 3.040 27 H -0.290 1.290 28 H -0.268 1.268 29 H -0.295 1.295 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.407 0.593 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.202 0.798 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.005 0.995 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.101 9.144 24.525 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.053 0.947 4 C 0.041 3.959 5 H 0.081 0.919 6 N -0.353 5.353 7 C 0.377 3.623 8 O -0.443 6.443 9 C -0.128 4.128 10 C -0.111 4.111 11 C -0.195 4.195 12 C -0.117 4.117 13 C -0.346 4.346 14 S 0.410 5.590 15 C -0.250 4.250 16 N -0.121 5.121 17 H 0.273 0.727 18 C -0.149 4.149 19 C -0.169 4.169 20 C 0.050 3.950 21 N -0.323 5.323 22 C -0.384 4.384 23 H 0.090 0.910 24 C -0.243 4.243 25 N -0.578 5.578 26 Si 0.789 3.211 27 H -0.217 1.217 28 H -0.193 1.193 29 H -0.222 1.222 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.243 0.757 34 H 0.172 0.828 35 H 0.181 0.819 36 H 0.219 0.781 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.023 0.977 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.112 9.859 23.957 26.231 hybrid contribution 0.041 -1.462 -1.419 2.038 sum -4.072 8.396 22.538 24.393 Atomic orbital electron populations 1.21740 0.94468 1.01181 1.01239 1.20705 0.94225 0.93537 0.85658 0.94746 1.21398 0.95121 0.95720 0.83679 0.91866 1.45768 1.69732 1.12441 1.07348 1.17154 0.76689 0.86317 0.82135 1.90854 1.52557 1.15341 1.85563 1.19767 1.14535 0.83092 0.95435 1.20905 1.01205 0.99226 0.89735 1.19718 1.12342 0.92742 0.94664 1.20552 1.00405 0.97748 0.93002 1.25315 1.10298 0.96135 1.02826 1.83937 1.74027 1.03988 0.97024 1.24009 1.10418 1.01582 0.88973 1.41316 1.56194 1.07114 1.07430 0.72712 1.21693 0.95083 1.00483 0.97610 1.21953 1.00449 0.98828 0.95695 1.20546 0.83173 0.96194 0.95073 1.44244 1.03150 1.65866 1.19042 1.19437 0.95418 1.36869 0.86639 0.91039 1.25757 0.99095 1.00744 0.98691 1.70166 1.25643 1.45330 1.16689 0.85359 0.79002 0.78201 0.78532 1.21686 1.19297 1.22197 0.93984 0.90892 0.93083 0.75700 0.82775 0.81929 0.78148 0.91480 0.92463 0.90797 0.93600 0.92787 0.97730 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 7.84 71.98 0.56 -3.95 16 2 C 0.17 6.32 3.03 44.98 0.14 6.46 16 3 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 4 C 0.15 5.05 2.00 45.07 0.09 5.14 16 5 H 0.06 2.57 7.58 -2.38 -0.02 2.55 16 6 N -0.70 -18.70 4.59 -446.29 -2.05 -20.75 16 7 C 0.59 17.32 7.75 86.39 0.67 17.99 16 8 O -0.56 -21.18 16.51 -4.43 -0.07 -21.25 16 9 C -0.01 -0.36 6.97 39.81 0.28 -0.08 16 10 C -0.08 -2.00 10.58 22.77 0.24 -1.75 16 11 C -0.18 -3.80 6.80 -20.41 -0.14 -3.94 16 12 C -0.09 -1.29 10.42 23.39 0.24 -1.05 16 13 C -0.21 -2.39 11.03 67.04 0.74 -1.65 16 14 S 0.16 2.07 23.24 -56.49 -1.31 0.75 16 15 C -0.02 -0.39 8.41 83.79 0.70 0.31 16 16 N -0.52 -9.56 6.08 -179.05 -1.09 -10.65 16 17 H 0.43 5.52 8.14 -92.71 -0.75 4.76 16 18 C -0.11 -3.75 5.46 30.62 0.17 -3.58 16 19 C -0.13 -5.00 6.06 30.53 0.19 -4.81 16 20 C 0.18 8.31 5.26 86.22 0.45 8.76 16 21 N -0.60 -28.85 2.99 -676.07 -2.02 -30.87 16 22 C -0.25 -13.42 8.57 84.03 0.72 -12.70 16 23 H 0.07 3.70 6.23 -2.91 -0.02 3.68 16 24 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 25 N -0.93 -54.02 11.23 21.65 0.24 -53.77 16 26 Si 0.96 44.54 29.58 68.60 2.03 46.57 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 30 H 0.04 1.58 7.43 -2.39 -0.02 1.56 16 31 H 0.07 1.98 7.81 -2.38 -0.02 1.96 16 32 H 0.05 1.93 7.63 -2.39 -0.02 1.91 16 33 H 0.41 8.11 7.68 -92.70 -0.71 7.40 16 34 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 40 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.05 2.92 6.14 -2.39 -0.01 2.90 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -68.73 360.63 0.79 -67.94 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.41 Total: 19.05 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.47 Total: 2.98 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.92 Total: -116.04 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.07 Total: -21.25 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.31 Total: 0.75 kcal Total: -68.73 0.79 -67.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647209.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.676 kcal (2) G-P(sol) polarization free energy of solvation -68.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds