Wall clock time and date at job start Tue Mar 31 2020 18:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.70583 * 2 1 4 4 C 1.53192 * 109.58771 * 120.35599 * 2 1 3 5 5 H 1.09000 * 109.49992 * 294.41057 * 4 2 1 6 6 N 1.46504 * 109.49684 * 54.46855 * 4 2 1 7 7 C 1.34776 * 120.00111 * 204.99781 * 6 4 2 8 8 O 1.21723 * 120.00066 * 0.02562 * 7 6 4 9 9 C 1.46494 * 119.99707 * 180.27291 * 7 6 4 10 10 C 1.36117 * 125.70724 * 179.44114 * 9 7 6 11 11 C 1.42224 * 107.62734 * 179.90909 * 10 9 7 12 12 C 1.45587 * 140.78347 * 180.02562 * 11 10 9 13 13 C 1.31816 * 114.63671 * 180.33224 * 12 11 10 14 14 S 1.75350 * 111.23970 * 359.97438 * 13 12 11 15 15 C 1.38179 * 106.99409 * 0.36124 * 11 10 9 16 16 N 1.37459 * 108.16632 * 359.77874 * 15 11 10 17 17 H 0.97006 * 125.68741 * 180.02562 * 16 15 11 18 18 C 1.53035 * 109.31545 * 174.41826 * 4 2 1 19 19 C 1.53041 * 109.54095 * 298.63634 * 18 4 2 20 20 C 1.53191 * 109.30960 * 61.36278 * 19 18 4 21 21 N 1.46922 * 108.77896 * 305.36665 * 20 19 18 22 22 C 1.36935 * 120.63257 * 233.63646 * 21 20 19 23 23 H 1.07998 * 120.00485 * 150.86656 * 22 21 20 24 24 C 1.38816 * 119.99678 * 330.86424 * 22 21 20 25 25 N 1.31625 * 119.99842 * 160.75251 * 24 22 21 26 26 Si 1.86803 * 120.00114 * 340.75520 * 24 22 21 27 27 H 1.48495 * 109.47243 * 92.26077 * 26 24 22 28 28 H 1.48504 * 109.46977 * 212.26084 * 26 24 22 29 29 H 1.48503 * 109.46794 * 332.25747 * 26 24 22 30 30 H 1.09003 * 109.47450 * 299.64495 * 1 2 3 31 31 H 1.08999 * 109.47465 * 59.64237 * 1 2 3 32 32 H 1.08999 * 109.47541 * 179.64498 * 1 2 3 33 33 H 0.97000 * 120.00155 * 25.00107 * 6 4 2 34 34 H 1.08004 * 126.18605 * 0.02562 * 10 9 7 35 35 H 1.08002 * 122.68644 * 0.30316 * 12 11 10 36 36 H 1.07996 * 124.37949 * 180.02562 * 13 12 11 37 37 H 1.09008 * 109.45878 * 58.65634 * 18 4 2 38 38 H 1.09000 * 109.46265 * 178.61091 * 18 4 2 39 39 H 1.08993 * 109.50106 * 301.41203 * 19 18 4 40 40 H 1.09007 * 109.52175 * 181.32944 * 19 18 4 41 41 H 1.09004 * 109.58802 * 185.57535 * 20 19 18 42 42 H 1.09002 * 109.70516 * 65.22479 * 20 19 18 43 43 H 0.97006 * 119.99640 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.7654 -0.1672 2.1369 6 7 1.4513 -2.0680 1.3071 7 6 1.3283 -2.6965 2.4930 8 8 1.7089 -2.1517 3.5129 9 6 0.7416 -4.0374 2.5539 10 6 0.5723 -4.7800 3.6820 11 6 -0.0306 -6.0106 3.3011 12 6 -0.5052 -7.2602 3.8779 13 6 -1.0027 -8.1141 3.0056 14 16 -0.9398 -7.4674 1.3769 15 6 -0.1998 -5.9702 1.9303 16 7 0.2732 -4.7623 1.4755 17 1 0.2771 -4.4679 0.5513 18 6 3.5674 -0.8481 1.1701 19 6 3.9568 -1.6658 -0.0635 20 6 3.4649 -0.9470 -1.3237 21 7 2.0225 -0.6995 -1.1945 22 6 1.1535 -1.1135 -2.1685 23 1 0.1364 -1.3696 -1.9115 24 6 1.5801 -1.2038 -3.4864 25 7 0.9073 -1.9381 -4.3470 26 14 3.1090 -0.2833 -4.0384 27 1 4.2944 -1.1677 -3.9052 28 1 2.9545 0.1270 -5.4573 29 1 3.2934 0.9226 -3.1917 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1477 -2.5020 0.4945 34 1 0.8447 -4.4869 4.6852 35 1 -0.4534 -7.4710 4.9359 36 1 -1.3986 -9.0858 3.2611 37 1 4.0061 0.1473 1.0993 38 1 3.9377 -1.3449 2.0669 39 1 3.4982 -2.6529 -0.0053 40 1 5.0411 -1.7702 -0.1039 41 1 3.6517 -1.5718 -2.1972 42 1 3.9900 0.0018 -1.4342 43 1 1.2053 -2.0009 -5.2681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993647212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:20 Heat of formation + Delta-G solvation = 59.247925 kcal Electronic energy + Delta-G solvation = -26922.736635 eV Core-core repulsion = 23288.916434 eV Total energy + Delta-G solvation = -3633.820202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -41.32574 -39.62058 -37.77950 -35.40126 -34.18179 -32.75317 -31.87623 -30.46581 -30.39634 -28.39827 -26.54246 -25.01534 -23.65899 -22.99358 -22.20098 -20.92533 -20.09810 -19.46662 -19.31488 -18.88796 -16.80571 -16.62091 -15.67422 -15.45290 -15.32793 -15.05155 -14.68020 -14.44862 -14.28604 -14.08388 -13.60216 -13.46204 -13.42254 -13.22680 -12.81965 -12.62305 -12.20553 -11.93442 -11.82221 -11.70105 -11.66419 -11.35143 -10.92059 -10.87394 -10.76413 -10.62300 -10.38390 -10.05802 -9.95437 -9.61777 -9.58304 -9.54276 -8.81670 -8.70710 -8.33417 -7.72249 -7.09040 -6.08630 -3.48042 1.02417 1.27519 1.37928 1.91978 2.84314 3.10385 3.23493 3.35018 3.40937 3.42782 3.50753 4.41627 4.60521 4.74505 4.86299 4.97636 5.12403 5.29119 5.33390 5.36615 5.42592 5.54733 5.62390 5.62929 5.85570 5.95931 5.98742 6.00973 6.14000 6.17909 6.21465 6.26009 6.35700 6.37580 6.42694 6.58800 6.64536 6.65832 6.72309 6.82716 6.91792 7.12804 7.76468 7.82074 8.18788 8.33831 8.78859 9.58445 9.95675 11.06243 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003801 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.175589 B = 7364.753766 C = 8590.362365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 H 0.047 0.953 4 C 0.134 3.866 5 H 0.085 0.915 6 N -0.699 5.699 7 C 0.583 3.417 8 O -0.537 6.537 9 C -0.001 4.001 10 C -0.077 4.077 11 C -0.166 4.166 12 C -0.070 4.070 13 C -0.226 4.226 14 S 0.134 5.866 15 C -0.007 4.007 16 N -0.520 5.520 17 H 0.426 0.574 18 C -0.123 4.123 19 C -0.132 4.132 20 C 0.124 3.876 21 N -0.603 5.603 22 C -0.269 4.269 23 H 0.091 0.909 24 C 0.030 3.970 25 N -0.906 5.906 26 Si 0.884 3.116 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.270 1.270 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.406 0.594 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.168 0.832 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -7.896 13.367 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.055 3.945 3 H 0.065 0.935 4 C 0.028 3.972 5 H 0.103 0.897 6 N -0.350 5.350 7 C 0.369 3.631 8 O -0.415 6.415 9 C -0.114 4.114 10 C -0.105 4.105 11 C -0.178 4.178 12 C -0.101 4.101 13 C -0.360 4.360 14 S 0.388 5.612 15 C -0.236 4.236 16 N -0.124 5.124 17 H 0.265 0.735 18 C -0.161 4.161 19 C -0.171 4.171 20 C -0.001 4.001 21 N -0.328 5.328 22 C -0.397 4.397 23 H 0.109 0.891 24 C -0.170 4.170 25 N -0.548 5.548 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.195 1.195 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.172 0.828 35 H 0.160 0.840 36 H 0.186 0.814 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.044 0.956 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.666 -7.965 12.381 14.816 hybrid contribution 1.231 0.887 -0.104 1.521 sum -0.435 -7.079 12.277 14.178 Atomic orbital electron populations 1.21789 0.94812 1.01862 1.00877 1.20763 0.94028 0.93873 0.85797 0.93529 1.21571 0.92810 0.82756 1.00072 0.89739 1.45922 1.61590 1.18890 1.08603 1.16981 0.78618 0.83197 0.84269 1.90823 1.50568 1.65885 1.34223 1.20185 1.09461 0.94838 0.86954 1.20671 1.00795 0.91127 0.97869 1.19370 1.10084 0.97159 0.91234 1.20299 0.98576 0.90963 1.00282 1.24871 1.11043 1.04703 0.95394 1.84056 1.65009 1.04586 1.07592 1.23559 1.08890 0.93928 0.97249 1.41568 1.49510 1.11634 1.09648 0.73450 1.21795 0.95507 1.00606 0.98241 1.21951 0.99407 0.99722 0.96067 1.21372 0.85022 0.97248 0.96455 1.44498 1.02175 1.65727 1.20422 1.18873 0.95729 1.39210 0.85855 0.89128 1.25316 0.97594 0.98357 0.95762 1.69802 1.41209 1.39126 1.04694 0.86953 0.83253 0.81394 0.76968 1.21682 1.23263 1.19547 0.93780 0.91373 0.92669 0.75805 0.82763 0.83953 0.81417 0.91510 0.92275 0.92122 0.92783 0.90951 0.95588 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.72 37.15 0.29 -2.01 16 2 C 0.16 2.87 3.20 -67.60 -0.22 2.65 16 3 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.13 2.15 2.33 -67.81 -0.16 1.99 16 5 H 0.08 1.35 7.57 -51.93 -0.39 0.95 16 6 N -0.70 -10.97 3.46 -55.05 -0.19 -11.16 16 7 C 0.58 9.39 7.75 -12.93 -0.10 9.29 16 8 O -0.54 -9.87 16.51 5.17 0.09 -9.79 16 9 C 0.00 -0.01 6.97 -82.47 -0.57 -0.59 16 10 C -0.08 -1.07 10.58 -38.81 -0.41 -1.48 16 11 C -0.17 -2.18 6.80 -105.46 -0.72 -2.90 16 12 C -0.07 -0.73 10.42 -38.55 -0.40 -1.13 16 13 C -0.23 -2.11 11.03 28.84 0.32 -1.79 16 14 S 0.13 1.45 23.24 -107.50 -2.50 -1.05 16 15 C -0.01 -0.09 8.41 -15.05 -0.13 -0.22 16 16 N -0.52 -7.06 6.08 -7.94 -0.05 -7.11 16 17 H 0.43 5.41 8.14 -40.82 -0.33 5.08 16 18 C -0.12 -1.93 5.58 -26.69 -0.15 -2.08 16 19 C -0.13 -2.23 5.93 -26.61 -0.16 -2.39 16 20 C 0.12 2.49 4.20 -3.71 -0.02 2.48 16 21 N -0.60 -12.59 2.40 -164.78 -0.40 -12.99 16 22 C -0.27 -6.59 9.05 -15.06 -0.14 -6.73 16 23 H 0.09 2.33 6.38 -52.49 -0.34 1.99 16 24 C 0.03 0.78 5.24 -17.43 -0.09 0.69 16 25 N -0.91 -25.84 13.97 55.49 0.78 -25.06 16 26 Si 0.88 21.26 24.34 -169.99 -4.14 17.12 16 27 H -0.29 -6.79 6.62 56.52 0.37 -6.41 16 28 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.27 -6.43 6.63 56.52 0.37 -6.05 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.25 7.66 -51.93 -0.40 0.85 16 32 H 0.05 0.95 6.38 -51.93 -0.33 0.62 16 33 H 0.41 6.53 6.84 -40.82 -0.28 6.25 16 34 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 1.61 4.62 -51.93 -0.24 1.37 16 42 H 0.03 0.53 7.02 -51.93 -0.36 0.16 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -29.36 350.93 -9.41 -38.77 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.64 Total: 10.18 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.65 Total: -4.20 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.14 Total: -56.32 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.14 Total: 17.12 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.50 Total: -1.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.36 -9.41 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.015 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds