Wall clock time and date at job start Tue Mar 31 2020 18:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08995 * 109.70583 * 2 1 4 4 C 1.53192 * 109.58771 * 120.35599 * 2 1 3 5 5 H 1.09000 * 109.49992 * 294.41057 * 4 2 1 6 6 N 1.46504 * 109.49684 * 54.46855 * 4 2 1 7 7 C 1.34776 * 120.00111 * 204.99781 * 6 4 2 8 8 O 1.21723 * 120.00066 * 0.02562 * 7 6 4 9 9 C 1.46494 * 119.99707 * 180.27291 * 7 6 4 10 10 C 1.36117 * 125.70724 * 179.44114 * 9 7 6 11 11 C 1.42224 * 107.62734 * 179.90909 * 10 9 7 12 12 C 1.45587 * 140.78347 * 180.02562 * 11 10 9 13 13 C 1.31816 * 114.63671 * 180.33224 * 12 11 10 14 14 S 1.75350 * 111.23970 * 359.97438 * 13 12 11 15 15 C 1.38179 * 106.99409 * 0.36124 * 11 10 9 16 16 N 1.37459 * 108.16632 * 359.77874 * 15 11 10 17 17 H 0.97006 * 125.68741 * 180.02562 * 16 15 11 18 18 C 1.53035 * 109.31545 * 174.41826 * 4 2 1 19 19 C 1.53041 * 109.54095 * 298.63634 * 18 4 2 20 20 C 1.53191 * 109.30960 * 61.36278 * 19 18 4 21 21 N 1.46922 * 108.77896 * 305.36665 * 20 19 18 22 22 C 1.36935 * 120.63257 * 233.63646 * 21 20 19 23 23 H 1.07998 * 120.00485 * 150.86656 * 22 21 20 24 24 C 1.38816 * 119.99678 * 330.86424 * 22 21 20 25 25 N 1.31625 * 119.99842 * 160.75251 * 24 22 21 26 26 Si 1.86803 * 120.00114 * 340.75520 * 24 22 21 27 27 H 1.48495 * 109.47243 * 92.26077 * 26 24 22 28 28 H 1.48504 * 109.46977 * 212.26084 * 26 24 22 29 29 H 1.48503 * 109.46794 * 332.25747 * 26 24 22 30 30 H 1.09003 * 109.47450 * 299.64495 * 1 2 3 31 31 H 1.08999 * 109.47465 * 59.64237 * 1 2 3 32 32 H 1.08999 * 109.47541 * 179.64498 * 1 2 3 33 33 H 0.97000 * 120.00155 * 25.00107 * 6 4 2 34 34 H 1.08004 * 126.18605 * 0.02562 * 10 9 7 35 35 H 1.08002 * 122.68644 * 0.30316 * 12 11 10 36 36 H 1.07996 * 124.37949 * 180.02562 * 13 12 11 37 37 H 1.09008 * 109.45878 * 58.65634 * 18 4 2 38 38 H 1.09000 * 109.46265 * 178.61091 * 18 4 2 39 39 H 1.08993 * 109.50106 * 301.41203 * 19 18 4 40 40 H 1.09007 * 109.52175 * 181.32944 * 19 18 4 41 41 H 1.09004 * 109.58802 * 185.57535 * 20 19 18 42 42 H 1.09002 * 109.70516 * 65.22479 * 20 19 18 43 43 H 0.97006 * 119.99640 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7294 1.2454 5 1 1.7654 -0.1672 2.1369 6 7 1.4513 -2.0680 1.3071 7 6 1.3283 -2.6965 2.4930 8 8 1.7089 -2.1517 3.5129 9 6 0.7416 -4.0374 2.5539 10 6 0.5723 -4.7800 3.6820 11 6 -0.0306 -6.0106 3.3011 12 6 -0.5052 -7.2602 3.8779 13 6 -1.0027 -8.1141 3.0056 14 16 -0.9398 -7.4674 1.3769 15 6 -0.1998 -5.9702 1.9303 16 7 0.2732 -4.7623 1.4755 17 1 0.2771 -4.4679 0.5513 18 6 3.5674 -0.8481 1.1701 19 6 3.9568 -1.6658 -0.0635 20 6 3.4649 -0.9470 -1.3237 21 7 2.0225 -0.6995 -1.1945 22 6 1.1535 -1.1135 -2.1685 23 1 0.1364 -1.3696 -1.9115 24 6 1.5801 -1.2038 -3.4864 25 7 0.9073 -1.9381 -4.3470 26 14 3.1090 -0.2833 -4.0384 27 1 4.2944 -1.1677 -3.9052 28 1 2.9545 0.1270 -5.4573 29 1 3.2934 0.9226 -3.1917 30 1 -0.3634 0.5083 0.8932 31 1 -0.3634 0.5194 -0.8867 32 1 -0.3634 -1.0276 -0.0064 33 1 1.1477 -2.5020 0.4945 34 1 0.8447 -4.4869 4.6852 35 1 -0.4534 -7.4710 4.9359 36 1 -1.3986 -9.0858 3.2611 37 1 4.0061 0.1473 1.0993 38 1 3.9377 -1.3449 2.0669 39 1 3.4982 -2.6529 -0.0053 40 1 5.0411 -1.7702 -0.1039 41 1 3.6517 -1.5718 -2.1972 42 1 3.9900 0.0018 -1.4342 43 1 1.2053 -2.0009 -5.2681 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993647212.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:19 Heat of formation + Delta-G solvation = 41.568220 kcal Electronic energy + Delta-G solvation = -26923.503285 eV Core-core repulsion = 23288.916434 eV Total energy + Delta-G solvation = -3634.586851 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38510 -40.93335 -39.20166 -36.28919 -35.73147 -34.26519 -33.54349 -31.94750 -31.49944 -29.46389 -27.98102 -26.71992 -24.93295 -24.06306 -23.49722 -22.38064 -21.20993 -20.69142 -20.49629 -20.02048 -18.40976 -17.90806 -17.28517 -16.98289 -16.54687 -15.98869 -15.91903 -15.63109 -15.46225 -15.41912 -15.26803 -14.75249 -14.65680 -14.47360 -14.30157 -13.93085 -13.71138 -13.42347 -13.22998 -12.79371 -12.78132 -12.59200 -12.54296 -12.33249 -12.19646 -11.97113 -11.71595 -11.64615 -11.43778 -11.25754 -11.23048 -10.65081 -10.55568 -10.09269 -9.27917 -8.89278 -8.65407 -8.12871 -5.46308 0.11268 0.23351 0.45006 1.10739 1.30953 1.43631 1.49842 1.85476 2.03097 2.15399 2.35348 2.44066 3.07366 3.25969 3.62109 3.82638 3.88372 3.95952 4.04047 4.05420 4.21051 4.43357 4.44616 4.52643 4.57232 4.65493 4.78121 4.79106 4.83940 4.89422 4.96076 5.04310 5.12938 5.16579 5.20483 5.25209 5.32091 5.40656 5.44624 5.55699 5.69024 5.91120 6.08409 6.19402 6.48548 6.92529 7.06412 7.65027 8.05451 9.05435 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003801 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.175589 B = 7364.753766 C = 8590.362365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.160 3.840 3 H 0.059 0.941 4 C 0.139 3.861 5 H 0.093 0.907 6 N -0.697 5.697 7 C 0.588 3.412 8 O -0.562 6.562 9 C -0.020 4.020 10 C -0.080 4.080 11 C -0.177 4.177 12 C -0.084 4.084 13 C -0.209 4.209 14 S 0.136 5.864 15 C -0.027 4.027 16 N -0.523 5.523 17 H 0.426 0.574 18 C -0.117 4.117 19 C -0.123 4.123 20 C 0.120 3.880 21 N -0.611 5.611 22 C -0.235 4.235 23 H 0.073 0.927 24 C -0.027 4.027 25 N -0.953 5.953 26 Si 0.934 3.066 27 H -0.282 1.282 28 H -0.321 1.321 29 H -0.262 1.262 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.403 0.597 34 H 0.163 0.837 35 H 0.170 0.830 36 H 0.204 0.796 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.033 0.967 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.969 -8.439 15.544 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.076 0.924 4 C 0.033 3.967 5 H 0.111 0.889 6 N -0.346 5.346 7 C 0.376 3.624 8 O -0.441 6.441 9 C -0.133 4.133 10 C -0.108 4.108 11 C -0.190 4.190 12 C -0.114 4.114 13 C -0.343 4.343 14 S 0.390 5.610 15 C -0.256 4.256 16 N -0.126 5.126 17 H 0.265 0.735 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.005 4.005 21 N -0.337 5.337 22 C -0.365 4.365 23 H 0.091 0.909 24 C -0.222 4.222 25 N -0.600 5.600 26 Si 0.765 3.235 27 H -0.209 1.209 28 H -0.250 1.250 29 H -0.187 1.187 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.239 0.761 34 H 0.180 0.820 35 H 0.187 0.813 36 H 0.221 0.779 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.117 -8.493 14.601 16.928 hybrid contribution 0.982 0.977 -0.676 1.541 sum -0.135 -7.516 13.925 15.824 Atomic orbital electron populations 1.21723 0.94422 1.01392 1.01234 1.20938 0.94417 0.94259 0.84922 0.92367 1.21502 0.93246 0.82757 0.99197 0.88928 1.45892 1.61493 1.18803 1.08453 1.17068 0.78068 0.83496 0.83784 1.90800 1.51834 1.66668 1.34841 1.20043 1.10907 0.94692 0.87703 1.20893 1.00394 0.91472 0.98023 1.19762 1.09910 0.97875 0.91412 1.20560 0.98989 0.89926 1.01876 1.25313 1.09493 1.05627 0.93853 1.84107 1.64428 1.03338 1.09147 1.24029 1.09180 0.94422 0.97992 1.41522 1.49737 1.11908 1.09427 0.73486 1.21764 0.94984 1.01294 0.97515 1.21837 1.00544 0.98902 0.94917 1.21396 0.84433 0.97420 0.97210 1.44591 1.02302 1.66316 1.20457 1.18852 0.95347 1.36051 0.86235 0.90899 1.25809 1.00172 0.99919 0.96309 1.69916 1.43475 1.41767 1.04794 0.86123 0.81145 0.80645 0.75576 1.20917 1.25041 1.18697 0.91168 0.93257 0.93555 0.76138 0.81964 0.81299 0.77929 0.89873 0.91963 0.93105 0.90699 0.93259 0.94958 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.72 71.98 0.56 -3.72 16 2 C 0.16 5.40 3.20 44.97 0.14 5.54 16 3 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.14 4.18 2.33 45.07 0.10 4.29 16 5 H 0.09 2.72 7.57 -2.39 -0.02 2.70 16 6 N -0.70 -21.29 3.46 -446.29 -1.54 -22.84 16 7 C 0.59 18.57 7.75 86.39 0.67 19.24 16 8 O -0.56 -20.10 16.51 -4.42 -0.07 -20.17 16 9 C -0.02 -0.58 6.97 39.81 0.28 -0.31 16 10 C -0.08 -2.16 10.58 22.77 0.24 -1.92 16 11 C -0.18 -4.42 6.80 -20.41 -0.14 -4.56 16 12 C -0.08 -1.52 10.42 23.39 0.24 -1.28 16 13 C -0.21 -3.27 11.03 67.04 0.74 -2.53 16 14 S 0.14 2.76 23.24 -56.49 -1.31 1.45 16 15 C -0.03 -0.70 8.41 83.80 0.70 0.00 16 16 N -0.52 -14.25 6.08 -179.05 -1.09 -15.34 16 17 H 0.43 11.14 8.14 -92.70 -0.75 10.39 16 18 C -0.12 -3.36 5.58 30.62 0.17 -3.19 16 19 C -0.12 -3.89 5.93 30.67 0.18 -3.71 16 20 C 0.12 4.63 4.20 86.36 0.36 5.00 16 21 N -0.61 -24.96 2.40 -675.25 -1.62 -26.58 16 22 C -0.24 -11.65 9.05 84.03 0.76 -10.89 16 23 H 0.07 3.84 6.38 -2.91 -0.02 3.82 16 24 C -0.03 -1.46 5.24 84.86 0.44 -1.01 16 25 N -0.95 -56.07 13.97 21.65 0.30 -55.77 16 26 Si 0.93 44.29 24.34 68.60 1.67 45.96 16 27 H -0.28 -12.86 6.62 99.48 0.66 -12.20 16 28 H -0.32 -15.95 7.11 99.48 0.71 -15.24 16 29 H -0.26 -11.91 6.63 99.48 0.66 -11.25 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 1.79 7.66 -2.39 -0.02 1.77 16 32 H 0.05 1.58 6.38 -2.39 -0.02 1.57 16 33 H 0.40 12.93 6.84 -92.71 -0.63 12.30 16 34 H 0.16 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 36 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.71 7.53 -2.39 -0.02 1.69 16 40 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.05 2.14 4.62 -2.39 -0.01 2.13 16 42 H 0.03 1.22 7.02 -2.39 -0.02 1.21 16 43 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -63.38 350.93 1.37 -62.00 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.42 Total: 30.31 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.46 Total: 0.97 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -3.95 Total: -120.52 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.07 Total: -20.17 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.67 Total: 45.96 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.31 Total: 1.45 kcal Total: -63.38 1.37 -62.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647212.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.569 kcal (2) G-P(sol) polarization free energy of solvation -63.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds