Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.58690 * 2 1 4 4 C 1.53189 * 109.59093 * 239.71540 * 2 1 3 5 5 H 1.08994 * 109.50089 * 65.59118 * 4 2 1 6 6 N 1.46498 * 109.49474 * 305.52547 * 4 2 1 7 7 C 1.34779 * 120.00241 * 155.00003 * 6 4 2 8 8 O 1.21727 * 119.99435 * 359.97438 * 7 6 4 9 9 C 1.46490 * 120.00304 * 180.02562 * 7 6 4 10 10 C 1.36117 * 125.71044 * 180.02562 * 9 7 6 11 11 C 1.42229 * 107.62655 * 179.69909 * 10 9 7 12 12 C 1.45591 * 140.78132 * 179.38169 * 11 10 9 13 13 C 1.31806 * 114.63735 * 180.58142 * 12 11 10 14 14 S 1.75349 * 111.24399 * 0.27197 * 13 12 11 15 15 C 1.38184 * 106.99242 * 0.42064 * 11 10 9 16 16 N 1.37463 * 108.16536 * 359.57841 * 15 11 10 17 17 H 0.96994 * 125.67752 * 180.27259 * 16 15 11 18 18 C 1.53042 * 109.31494 * 185.58049 * 4 2 1 19 19 C 1.53036 * 109.54073 * 61.36054 * 18 4 2 20 20 C 1.53191 * 109.31221 * 298.63958 * 19 18 4 21 21 N 1.46918 * 108.78192 * 54.63167 * 20 19 18 22 22 C 1.36939 * 120.63381 * 126.36329 * 21 20 19 23 23 H 1.07995 * 120.00137 * 209.02426 * 22 21 20 24 24 C 1.38817 * 119.99424 * 29.03574 * 22 21 20 25 25 N 1.31620 * 120.00179 * 15.01996 * 24 22 21 26 26 Si 1.86798 * 119.99862 * 195.02774 * 24 22 21 27 27 H 1.48503 * 109.47001 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47266 * 119.99222 * 26 24 22 29 29 H 1.48501 * 109.47447 * 239.99902 * 26 24 22 30 30 H 1.09004 * 109.46744 * 180.28744 * 1 2 3 31 31 H 1.08999 * 109.47407 * 300.28942 * 1 2 3 32 32 H 1.09001 * 109.47085 * 60.29189 * 1 2 3 33 33 H 0.97000 * 120.00302 * 335.00092 * 6 4 2 34 34 H 1.07999 * 126.18779 * 359.97438 * 10 9 7 35 35 H 1.08003 * 122.68019 * 0.85371 * 12 11 10 36 36 H 1.08004 * 124.38210 * 180.29012 * 13 12 11 37 37 H 1.08997 * 109.46243 * 181.38372 * 18 4 2 38 38 H 1.09006 * 109.45748 * 301.33940 * 18 4 2 39 39 H 1.09002 * 109.50011 * 178.69031 * 19 18 4 40 40 H 1.08996 * 109.52626 * 58.60386 * 19 18 4 41 41 H 1.09012 * 109.58605 * 294.84210 * 20 19 18 42 42 H 1.08998 * 109.58779 * 174.42757 * 20 19 18 43 43 H 0.96993 * 119.99745 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.7656 -0.1646 -2.1370 6 7 1.4515 -2.0663 -1.3095 7 6 1.3286 -2.6934 -2.4962 8 8 1.7091 -2.1474 -3.5154 9 6 0.7360 -4.0317 -2.5596 10 6 0.5568 -4.7685 -3.6899 11 6 -0.0404 -6.0021 -3.3098 12 6 -0.5274 -7.2455 -3.8897 13 6 -1.0268 -8.0995 -3.0187 14 16 -0.9572 -7.4579 -1.3883 15 6 -0.2125 -5.9620 -1.9393 16 7 0.2666 -4.7573 -1.4822 17 1 0.2737 -4.4656 -0.5572 18 6 3.5676 -0.8465 -1.1710 19 6 3.9569 -1.6657 0.0616 20 6 3.4650 -0.9485 1.3226 21 7 2.0225 -0.7009 1.1937 22 6 1.1536 -1.1161 2.1672 23 1 0.1359 -1.3702 1.9100 24 6 1.5807 -1.2100 3.4847 25 7 2.7037 -0.6321 3.8552 26 14 0.5619 -2.1568 4.7316 27 1 -0.6468 -2.7075 4.0674 28 1 1.3712 -3.2700 5.2892 29 1 0.1508 -1.2453 5.8295 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8926 33 1 1.1480 -2.5013 -0.4974 34 1 0.8242 -4.4720 -4.6934 35 1 -0.4791 -7.4535 -4.9484 36 1 -1.4270 -9.0691 -3.2759 37 1 3.9379 -1.3423 -2.0683 38 1 4.0062 0.1488 -1.0990 39 1 5.0413 -1.7695 0.1018 40 1 3.4988 -2.6529 0.0025 41 1 3.9903 0.0005 1.4318 42 1 3.6518 -1.5742 2.1953 43 1 3.0020 -0.6975 4.7758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993647217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = 54.185300 kcal Electronic energy + Delta-G solvation = -26885.426354 eV Core-core repulsion = 23251.386621 eV Total energy + Delta-G solvation = -3634.039734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.33665 -39.49443 -37.57205 -35.42929 -34.07511 -32.51597 -31.81985 -30.48945 -29.76686 -28.31215 -26.34030 -25.12505 -23.58034 -22.93785 -21.75949 -20.85800 -20.11886 -19.43961 -19.29649 -18.75555 -16.78185 -16.54008 -15.51841 -15.30195 -15.14322 -15.00778 -14.61994 -14.39966 -14.17105 -13.93710 -13.56299 -13.40218 -13.17453 -13.06802 -12.79735 -12.65716 -11.96408 -11.94621 -11.74806 -11.36964 -11.33428 -11.07985 -10.92482 -10.80433 -10.73036 -10.60553 -10.20826 -10.10591 -9.90551 -9.75491 -9.56944 -9.40101 -8.72058 -8.58550 -8.35703 -7.75150 -6.79029 -5.91894 -3.37917 0.98260 1.24090 1.37732 1.87696 2.82964 3.07479 3.25209 3.32431 3.35208 3.39867 3.52725 4.34399 4.59048 4.84720 4.98272 5.20733 5.22542 5.32008 5.46538 5.49096 5.55929 5.61399 5.66198 5.87345 5.97950 6.00909 6.10570 6.12776 6.23465 6.32441 6.36749 6.45023 6.54860 6.59179 6.64364 6.69026 6.84963 6.85322 6.96911 7.10029 7.29251 7.57670 7.66637 7.81939 8.30795 8.38816 9.07163 9.70081 10.27152 11.15742 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004117 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.520918 B = 6798.736127 C = 8478.794460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.158 3.842 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.080 0.920 6 N -0.697 5.697 7 C 0.581 3.419 8 O -0.537 6.537 9 C 0.002 3.998 10 C -0.077 4.077 11 C -0.165 4.165 12 C -0.069 4.069 13 C -0.226 4.226 14 S 0.130 5.870 15 C -0.009 4.009 16 N -0.521 5.521 17 H 0.424 0.576 18 C -0.122 4.122 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.587 5.587 22 C -0.260 4.260 23 H 0.070 0.930 24 C 0.008 3.992 25 N -0.897 5.897 26 Si 0.898 3.102 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.289 1.289 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.403 0.597 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.169 0.831 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.088 0.912 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -10.701 -11.648 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.060 0.940 4 C 0.028 3.972 5 H 0.098 0.902 6 N -0.347 5.347 7 C 0.367 3.633 8 O -0.415 6.415 9 C -0.112 4.112 10 C -0.105 4.105 11 C -0.177 4.177 12 C -0.100 4.100 13 C -0.359 4.359 14 S 0.383 5.617 15 C -0.238 4.238 16 N -0.125 5.125 17 H 0.264 0.736 18 C -0.160 4.160 19 C -0.179 4.179 20 C 0.045 3.955 21 N -0.311 5.311 22 C -0.390 4.390 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.541 5.541 26 Si 0.728 3.272 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.216 1.216 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.239 0.761 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.037 0.963 42 H 0.106 0.894 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.128 -10.705 -10.671 15.962 hybrid contribution -0.102 -0.022 0.355 0.370 sum -5.230 -10.727 -10.317 15.775 Atomic orbital electron populations 1.21786 0.95633 1.01269 1.00636 1.20735 0.93332 0.94061 0.86762 0.94028 1.21612 0.93038 0.82393 1.00110 0.90188 1.45918 1.61424 1.19024 1.08340 1.16987 0.78780 0.83150 0.84385 1.90825 1.50641 1.65699 1.34315 1.20239 1.09146 0.94955 0.86850 1.20682 1.00872 0.91066 0.97891 1.19378 1.09988 0.97162 0.91207 1.20309 0.98350 0.91048 1.00309 1.24852 1.11122 1.04723 0.95248 1.83993 1.64958 1.04955 1.07754 1.23547 1.09014 0.93960 0.97295 1.41547 1.49470 1.11894 1.09551 0.73641 1.21780 0.95247 1.00648 0.98347 1.22139 0.99078 0.99371 0.97346 1.20828 0.83054 0.97304 0.94333 1.44189 1.03170 1.64796 1.18926 1.19173 0.94788 1.38604 0.86407 0.91217 1.25099 0.97652 0.99459 0.96954 1.70019 1.23129 1.44040 1.16867 0.86302 0.79575 0.79591 0.81714 1.20333 1.21567 1.21617 0.93115 0.91677 0.94019 0.76101 0.82720 0.83905 0.81406 0.92937 0.91672 0.93316 0.93130 0.96300 0.89410 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.72 37.16 0.29 -2.07 16 2 C 0.16 2.99 3.20 -67.60 -0.22 2.78 16 3 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 4 C 0.13 2.30 2.33 -67.81 -0.16 2.14 16 5 H 0.08 1.37 7.57 -51.93 -0.39 0.98 16 6 N -0.70 -11.27 3.46 -55.06 -0.19 -11.46 16 7 C 0.58 9.58 7.75 -12.94 -0.10 9.48 16 8 O -0.54 -10.17 16.51 5.16 0.09 -10.09 16 9 C 0.00 0.02 6.97 -82.47 -0.57 -0.55 16 10 C -0.08 -1.08 10.58 -38.81 -0.41 -1.49 16 11 C -0.16 -2.14 6.80 -105.45 -0.72 -2.86 16 12 C -0.07 -0.71 10.42 -38.55 -0.40 -1.11 16 13 C -0.23 -2.04 11.03 28.84 0.32 -1.73 16 14 S 0.13 1.35 23.24 -107.50 -2.50 -1.14 16 15 C -0.01 -0.12 8.41 -15.05 -0.13 -0.24 16 16 N -0.52 -6.92 6.08 -7.94 -0.05 -6.96 16 17 H 0.42 5.11 8.14 -40.82 -0.33 4.78 16 18 C -0.12 -2.09 5.58 -26.69 -0.15 -2.23 16 19 C -0.14 -2.57 5.93 -26.61 -0.16 -2.73 16 20 C 0.17 3.75 5.29 -3.72 -0.02 3.73 16 21 N -0.59 -12.93 2.65 -164.78 -0.44 -13.37 16 22 C -0.26 -6.27 8.61 -15.06 -0.13 -6.40 16 23 H 0.07 1.62 6.20 -52.49 -0.33 1.30 16 24 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 25 N -0.90 -24.37 11.14 55.49 0.62 -23.75 16 26 Si 0.90 20.18 29.58 -169.99 -5.03 15.15 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 29 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 30 H 0.05 0.87 6.38 -51.93 -0.33 0.54 16 31 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 6.53 6.84 -40.82 -0.28 6.25 16 34 H 0.16 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 36 H 0.17 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 41 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 42 H 0.09 2.19 6.06 -51.93 -0.31 1.87 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -28.55 357.27 -10.46 -39.01 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.70 Total: 10.39 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.64 Total: -3.16 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.06 Total: -55.54 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.50 Total: -1.14 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.55 -10.46 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.194 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds