Wall clock time and date at job start Tue Mar 31 2020 18:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.58690 * 2 1 4 4 C 1.53189 * 109.59093 * 239.71540 * 2 1 3 5 5 H 1.08994 * 109.50089 * 65.59118 * 4 2 1 6 6 N 1.46498 * 109.49474 * 305.52547 * 4 2 1 7 7 C 1.34779 * 120.00241 * 155.00003 * 6 4 2 8 8 O 1.21727 * 119.99435 * 359.97438 * 7 6 4 9 9 C 1.46490 * 120.00304 * 180.02562 * 7 6 4 10 10 C 1.36117 * 125.71044 * 180.02562 * 9 7 6 11 11 C 1.42229 * 107.62655 * 179.69909 * 10 9 7 12 12 C 1.45591 * 140.78132 * 179.38169 * 11 10 9 13 13 C 1.31806 * 114.63735 * 180.58142 * 12 11 10 14 14 S 1.75349 * 111.24399 * 0.27197 * 13 12 11 15 15 C 1.38184 * 106.99242 * 0.42064 * 11 10 9 16 16 N 1.37463 * 108.16536 * 359.57841 * 15 11 10 17 17 H 0.96994 * 125.67752 * 180.27259 * 16 15 11 18 18 C 1.53042 * 109.31494 * 185.58049 * 4 2 1 19 19 C 1.53036 * 109.54073 * 61.36054 * 18 4 2 20 20 C 1.53191 * 109.31221 * 298.63958 * 19 18 4 21 21 N 1.46918 * 108.78192 * 54.63167 * 20 19 18 22 22 C 1.36939 * 120.63381 * 126.36329 * 21 20 19 23 23 H 1.07995 * 120.00137 * 209.02426 * 22 21 20 24 24 C 1.38817 * 119.99424 * 29.03574 * 22 21 20 25 25 N 1.31620 * 120.00179 * 15.01996 * 24 22 21 26 26 Si 1.86798 * 119.99862 * 195.02774 * 24 22 21 27 27 H 1.48503 * 109.47001 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47266 * 119.99222 * 26 24 22 29 29 H 1.48501 * 109.47447 * 239.99902 * 26 24 22 30 30 H 1.09004 * 109.46744 * 180.28744 * 1 2 3 31 31 H 1.08999 * 109.47407 * 300.28942 * 1 2 3 32 32 H 1.09001 * 109.47085 * 60.29189 * 1 2 3 33 33 H 0.97000 * 120.00302 * 335.00092 * 6 4 2 34 34 H 1.07999 * 126.18779 * 359.97438 * 10 9 7 35 35 H 1.08003 * 122.68019 * 0.85371 * 12 11 10 36 36 H 1.08004 * 124.38210 * 180.29012 * 13 12 11 37 37 H 1.08997 * 109.46243 * 181.38372 * 18 4 2 38 38 H 1.09006 * 109.45748 * 301.33940 * 18 4 2 39 39 H 1.09002 * 109.50011 * 178.69031 * 19 18 4 40 40 H 1.08996 * 109.52626 * 58.60386 * 19 18 4 41 41 H 1.09012 * 109.58605 * 294.84210 * 20 19 18 42 42 H 1.08998 * 109.58779 * 174.42757 * 20 19 18 43 43 H 0.96993 * 119.99745 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2463 5 1 1.7656 -0.1646 -2.1370 6 7 1.4515 -2.0663 -1.3095 7 6 1.3286 -2.6934 -2.4962 8 8 1.7091 -2.1474 -3.5154 9 6 0.7360 -4.0317 -2.5596 10 6 0.5568 -4.7685 -3.6899 11 6 -0.0404 -6.0021 -3.3098 12 6 -0.5274 -7.2455 -3.8897 13 6 -1.0268 -8.0995 -3.0187 14 16 -0.9572 -7.4579 -1.3883 15 6 -0.2125 -5.9620 -1.9393 16 7 0.2666 -4.7573 -1.4822 17 1 0.2737 -4.4656 -0.5572 18 6 3.5676 -0.8465 -1.1710 19 6 3.9569 -1.6657 0.0616 20 6 3.4650 -0.9485 1.3226 21 7 2.0225 -0.7009 1.1937 22 6 1.1536 -1.1161 2.1672 23 1 0.1359 -1.3702 1.9100 24 6 1.5807 -1.2100 3.4847 25 7 2.7037 -0.6321 3.8552 26 14 0.5619 -2.1568 4.7316 27 1 -0.6468 -2.7075 4.0674 28 1 1.3712 -3.2700 5.2892 29 1 0.1508 -1.2453 5.8295 30 1 -0.3633 -1.0277 0.0052 31 1 -0.3634 0.5183 0.8874 32 1 -0.3633 0.5093 -0.8926 33 1 1.1480 -2.5013 -0.4974 34 1 0.8242 -4.4720 -4.6934 35 1 -0.4791 -7.4535 -4.9484 36 1 -1.4270 -9.0691 -3.2759 37 1 3.9379 -1.3423 -2.0683 38 1 4.0062 0.1488 -1.0990 39 1 5.0413 -1.7695 0.1018 40 1 3.4988 -2.6529 0.0025 41 1 3.9903 0.0005 1.4318 42 1 3.6518 -1.5742 2.1953 43 1 3.0020 -0.6975 4.7758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993647217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:31 Heat of formation + Delta-G solvation = 38.603622 kcal Electronic energy + Delta-G solvation = -26886.102026 eV Core-core repulsion = 23251.386621 eV Total energy + Delta-G solvation = -3634.715406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.37796 -40.84923 -39.05988 -36.28958 -35.68311 -34.07216 -33.45249 -31.51549 -31.35181 -29.39760 -27.86729 -26.87766 -24.79102 -23.91320 -23.25465 -22.40498 -21.21227 -20.63911 -20.44629 -20.00376 -18.29824 -17.87658 -17.15209 -16.59416 -16.52457 -15.99930 -15.75880 -15.57896 -15.51976 -15.39239 -15.03503 -14.64226 -14.61772 -14.45651 -14.26282 -13.74935 -13.56796 -13.00027 -12.93902 -12.78962 -12.77556 -12.58628 -12.47285 -12.35370 -12.22608 -11.93711 -11.72661 -11.71265 -11.42556 -11.24300 -11.06195 -10.55183 -10.53479 -10.06141 -9.27364 -8.66063 -8.63340 -7.84461 -5.31266 0.10746 0.23799 0.45145 1.10040 1.45462 1.49438 1.56564 1.85970 2.03625 2.16970 2.36073 2.50468 3.32098 3.55775 3.63767 3.83766 3.96256 4.03014 4.05474 4.18083 4.36023 4.45980 4.52388 4.62659 4.65701 4.74022 4.78631 4.91527 4.96320 5.00372 5.08796 5.16212 5.18722 5.21691 5.31741 5.40598 5.44864 5.50741 5.57004 5.68850 5.71229 5.78030 6.10526 6.41236 6.51868 7.08191 7.16972 7.86586 8.39781 9.22060 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011513 B = 0.004117 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.520918 B = 6798.736127 C = 8478.794460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.143 3.857 5 H 0.086 0.914 6 N -0.693 5.693 7 C 0.587 3.413 8 O -0.564 6.564 9 C -0.018 4.018 10 C -0.080 4.080 11 C -0.178 4.178 12 C -0.084 4.084 13 C -0.210 4.210 14 S 0.141 5.859 15 C -0.026 4.026 16 N -0.521 5.521 17 H 0.427 0.573 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.179 3.821 21 N -0.597 5.597 22 C -0.248 4.248 23 H 0.081 0.919 24 C -0.047 4.047 25 N -0.934 5.934 26 Si 0.956 3.044 27 H -0.262 1.262 28 H -0.296 1.296 29 H -0.300 1.300 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.203 0.797 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.048 0.952 41 H -0.004 1.004 42 H 0.056 0.944 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -12.704 -13.211 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.050 3.950 3 H 0.053 0.947 4 C 0.037 3.963 5 H 0.104 0.896 6 N -0.343 5.343 7 C 0.374 3.626 8 O -0.444 6.444 9 C -0.131 4.131 10 C -0.109 4.109 11 C -0.191 4.191 12 C -0.114 4.114 13 C -0.343 4.343 14 S 0.395 5.605 15 C -0.255 4.255 16 N -0.125 5.125 17 H 0.267 0.733 18 C -0.155 4.155 19 C -0.165 4.165 20 C 0.053 3.947 21 N -0.321 5.321 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.242 4.242 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.186 1.186 28 H -0.223 1.223 29 H -0.228 1.228 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.240 0.760 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.220 0.780 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.014 0.986 42 H 0.075 0.925 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.653 -12.720 -12.254 18.874 hybrid contribution 0.320 0.545 0.776 1.001 sum -6.333 -12.175 -11.478 17.891 Atomic orbital electron populations 1.21710 0.94289 1.01537 1.01049 1.20851 0.94448 0.93610 0.86097 0.94697 1.21423 0.92955 0.82822 0.99098 0.89565 1.45830 1.61367 1.18631 1.08436 1.17118 0.78142 0.83560 0.83766 1.90804 1.51970 1.66594 1.35050 1.19982 1.10791 0.94617 0.87753 1.20889 1.00461 0.91525 0.97980 1.19751 1.09951 0.97806 0.91548 1.20554 0.98888 0.90096 1.01860 1.25306 1.09502 1.05599 0.93936 1.84025 1.64172 1.03406 1.08928 1.24025 1.09059 0.94468 0.97943 1.41473 1.49568 1.12074 1.09376 0.73331 1.21733 0.95340 1.00767 0.97618 1.21950 0.99765 0.98834 0.95968 1.20594 0.83276 0.95887 0.94937 1.44358 1.02956 1.65318 1.19434 1.19509 0.95211 1.36555 0.86571 0.90183 1.25746 0.98763 1.00966 0.98748 1.70172 1.24993 1.46243 1.16601 0.85382 0.78731 0.77928 0.79438 1.18574 1.22334 1.22811 0.92842 0.93247 0.91635 0.76042 0.82171 0.81459 0.77975 0.92442 0.91068 0.92006 0.93295 0.98601 0.92515 0.94443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.72 71.98 0.56 -3.73 16 2 C 0.16 5.80 3.20 44.97 0.14 5.94 16 3 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 4 C 0.14 4.74 2.33 45.07 0.10 4.84 16 5 H 0.09 2.82 7.57 -2.39 -0.02 2.80 16 6 N -0.69 -21.73 3.46 -446.30 -1.54 -23.28 16 7 C 0.59 18.84 7.75 86.39 0.67 19.51 16 8 O -0.56 -20.90 16.51 -4.44 -0.07 -20.98 16 9 C -0.02 -0.52 6.97 39.81 0.28 -0.24 16 10 C -0.08 -2.16 10.58 22.77 0.24 -1.92 16 11 C -0.18 -4.30 6.80 -20.40 -0.14 -4.44 16 12 C -0.08 -1.47 10.42 23.40 0.24 -1.22 16 13 C -0.21 -3.05 11.03 67.05 0.74 -2.31 16 14 S 0.14 2.60 23.24 -56.49 -1.31 1.29 16 15 C -0.03 -0.63 8.41 83.80 0.71 0.07 16 16 N -0.52 -13.34 6.08 -179.04 -1.09 -14.43 16 17 H 0.43 9.98 8.14 -92.71 -0.75 9.22 16 18 C -0.12 -3.85 5.58 30.62 0.17 -3.68 16 19 C -0.13 -4.58 5.93 30.67 0.18 -4.40 16 20 C 0.18 8.03 5.29 86.36 0.46 8.49 16 21 N -0.60 -26.35 2.65 -675.23 -1.79 -28.14 16 22 C -0.25 -11.92 8.61 84.03 0.72 -11.20 16 23 H 0.08 3.64 6.20 -2.91 -0.02 3.62 16 24 C -0.05 -2.40 4.96 84.86 0.42 -1.98 16 25 N -0.93 -52.24 11.14 21.65 0.24 -52.00 16 26 Si 0.96 41.87 29.58 68.60 2.03 43.90 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 28 H -0.30 -13.20 7.11 99.48 0.71 -12.50 16 29 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 30 H 0.05 1.74 6.38 -2.38 -0.02 1.73 16 31 H 0.05 1.80 7.66 -2.39 -0.02 1.78 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.40 12.71 6.84 -92.71 -0.63 12.07 16 34 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 39 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 1.79 7.53 -2.39 -0.02 1.77 16 41 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 42 H 0.06 2.92 6.06 -2.39 -0.01 2.90 16 43 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -61.58 357.27 1.63 -59.95 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: -0.33 Total: 29.95 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.49 Total: 3.74 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.18 Total: -117.85 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.07 Total: -20.98 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.31 Total: 1.29 kcal Total: -61.58 1.63 -59.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993647217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.553 kcal (2) G-P(sol) polarization free energy of solvation -61.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds