Wall clock time and date at job start Tue Mar 31 2020 18:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.58848 * 2 1 4 4 C 1.53193 * 109.58705 * 120.28847 * 2 1 3 5 5 H 1.09001 * 109.49191 * 294.51509 * 4 2 1 6 6 N 1.46500 * 109.52722 * 54.59304 * 4 2 1 7 7 C 1.34769 * 120.00429 * 204.85495 * 6 4 2 8 8 O 1.21737 * 119.99653 * 0.02562 * 7 6 4 9 9 C 1.46445 * 120.00456 * 180.02562 * 7 6 4 10 10 C 1.37467 * 125.80658 * 179.69627 * 9 7 6 11 11 C 1.40664 * 107.55086 * 179.84739 * 10 9 7 12 12 S 1.76022 * 142.39278 * 180.02562 * 11 10 9 13 13 C 1.75591 * 91.31095 * 180.36378 * 12 11 10 14 14 C 1.32769 * 110.47490 * 0.02562 * 13 12 11 15 15 C 1.38244 * 108.03677 * 0.41373 * 11 10 9 16 16 N 1.37919 * 125.80464 * 359.97438 * 9 7 6 17 17 H 0.97003 * 125.68249 * 0.02562 * 16 9 7 18 18 C 1.53043 * 109.31033 * 174.56261 * 4 2 1 19 19 C 1.53031 * 109.52657 * 298.63870 * 18 4 2 20 20 C 1.53161 * 109.33026 * 61.37563 * 19 18 4 21 21 N 1.46926 * 108.76733 * 305.35327 * 20 19 18 22 22 C 1.36935 * 120.63409 * 233.62910 * 21 20 19 23 23 H 1.08006 * 119.99896 * 150.89571 * 22 21 20 24 24 C 1.38809 * 120.00054 * 330.89882 * 22 21 20 25 25 N 1.31616 * 120.00367 * 160.72526 * 24 22 21 26 26 Si 1.86799 * 119.99820 * 340.72973 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.26933 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.27074 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.26801 * 26 24 22 30 30 H 1.09000 * 109.46449 * 299.71771 * 1 2 3 31 31 H 1.08998 * 109.47102 * 59.71018 * 1 2 3 32 32 H 1.08994 * 109.47061 * 179.71638 * 1 2 3 33 33 H 0.97005 * 119.99804 * 24.85272 * 6 4 2 34 34 H 1.07994 * 126.22349 * 359.96874 * 10 9 7 35 35 H 1.08002 * 124.76252 * 179.97438 * 13 12 11 36 36 H 1.07993 * 122.16210 * 180.02562 * 14 13 12 37 37 H 1.08999 * 109.45941 * 58.65371 * 18 4 2 38 38 H 1.08998 * 109.45775 * 178.62719 * 18 4 2 39 39 H 1.09003 * 109.49699 * 181.31210 * 19 18 4 40 40 H 1.09006 * 109.50226 * 301.40691 * 19 18 4 41 41 H 1.08999 * 109.59331 * 185.57370 * 20 19 18 42 42 H 1.08996 * 109.71230 * 65.20509 * 20 19 18 43 43 H 0.97000 * 120.00609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7639 -0.1655 2.1371 6 7 1.4541 -2.0676 1.3086 7 6 1.3340 -2.6966 2.4945 8 8 1.7150 -2.1512 3.5140 9 6 0.7452 -4.0360 2.5568 10 6 0.5714 -4.7859 3.6957 11 6 -0.0280 -6.0006 3.3163 12 16 -0.6204 -7.5258 3.9653 13 6 -1.0827 -8.0746 2.3627 14 6 -0.7932 -7.1508 1.4540 15 6 -0.2046 -5.9810 1.9453 16 7 0.2758 -4.7618 1.4820 17 1 0.2806 -4.4702 0.5569 18 6 3.5679 -0.8435 1.1727 19 6 3.9600 -1.6607 -0.0602 20 6 3.4685 -0.9436 -1.3211 21 7 2.0254 -0.6991 -1.1937 22 6 1.1584 -1.1151 -2.1686 23 1 0.1413 -1.3728 -1.9126 24 6 1.5868 -1.2056 -3.4858 25 7 0.9167 -1.9419 -4.3467 26 14 3.1145 -0.2825 -4.0366 27 1 4.3015 -1.1645 -3.9014 28 1 2.9609 0.1266 -5.4559 29 1 3.2956 0.9244 -3.1905 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.1501 -2.5020 0.4963 34 1 0.8435 -4.4946 4.6993 35 1 -1.5378 -9.0298 2.1463 36 1 -0.9996 -7.2931 0.4036 37 1 4.0046 0.1527 1.1020 38 1 3.9381 -1.3395 2.0700 39 1 5.0446 -1.7625 -0.0994 40 1 3.5034 -2.6488 -0.0022 41 1 3.6575 -1.5684 -2.1941 42 1 3.9917 0.0062 -1.4314 43 1 1.2162 -2.0055 -5.2671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994153040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:48 Heat of formation + Delta-G solvation = 58.371395 kcal Electronic energy + Delta-G solvation = -26947.071690 eV Core-core repulsion = 23313.213479 eV Total energy + Delta-G solvation = -3633.858211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -41.35735 -39.66364 -37.81395 -35.32830 -34.20643 -32.76693 -31.90980 -30.95137 -30.31943 -28.21950 -26.53381 -25.01758 -23.77313 -22.92722 -22.15135 -20.93618 -20.45873 -19.77984 -19.03341 -18.64622 -16.62976 -16.58000 -15.69516 -15.48698 -15.42446 -15.31640 -14.49189 -14.43657 -14.15428 -14.09591 -13.60859 -13.54320 -13.44348 -13.23887 -12.90535 -12.63230 -12.21359 -11.92656 -11.82584 -11.67033 -11.63762 -11.35579 -10.94696 -10.92371 -10.77054 -10.62752 -10.38991 -10.06332 -9.96561 -9.78992 -9.62183 -9.58872 -8.83050 -8.71646 -8.12399 -7.73344 -7.09711 -6.09325 -3.48656 0.72025 1.46441 1.93554 1.98913 2.70180 2.83888 3.22943 3.38561 3.40488 3.42329 3.45108 4.41031 4.69657 4.73778 4.89277 4.91901 5.11829 5.28633 5.30097 5.34622 5.41216 5.45502 5.61932 5.67634 5.84969 5.86235 5.92090 5.96999 5.99422 6.17497 6.20714 6.25675 6.35316 6.40604 6.42231 6.56747 6.60041 6.64209 6.71854 6.82263 6.91405 7.26017 7.75714 7.81386 8.18074 8.32531 8.78206 9.57824 9.95066 11.05586 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.003595 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.167732 B = 7786.967349 C = 8853.773241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.162 3.838 3 H 0.047 0.953 4 C 0.134 3.866 5 H 0.085 0.915 6 N -0.698 5.698 7 C 0.582 3.418 8 O -0.536 6.536 9 C 0.016 3.984 10 C -0.080 4.080 11 C -0.218 4.218 12 S 0.118 5.882 13 C -0.192 4.192 14 C -0.110 4.110 15 C 0.064 3.936 16 N -0.535 5.535 17 H 0.425 0.575 18 C -0.123 4.123 19 C -0.132 4.132 20 C 0.124 3.876 21 N -0.603 5.603 22 C -0.268 4.268 23 H 0.091 0.909 24 C 0.030 3.970 25 N -0.906 5.906 26 Si 0.884 3.116 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.270 1.270 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.406 0.594 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.026 0.974 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 -7.815 12.853 15.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.055 3.945 3 H 0.065 0.935 4 C 0.028 3.972 5 H 0.103 0.897 6 N -0.349 5.349 7 C 0.368 3.632 8 O -0.414 6.414 9 C -0.099 4.099 10 C -0.111 4.111 11 C -0.338 4.338 12 S 0.377 5.623 13 C -0.328 4.328 14 C -0.143 4.143 15 C -0.055 4.055 16 N -0.138 5.138 17 H 0.264 0.736 18 C -0.162 4.162 19 C -0.171 4.171 20 C -0.001 4.001 21 N -0.328 5.328 22 C -0.396 4.396 23 H 0.109 0.891 24 C -0.170 4.170 25 N -0.549 5.549 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.233 1.233 29 H -0.195 1.195 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.172 0.828 35 H 0.189 0.811 36 H 0.160 0.840 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.044 0.956 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.410 -7.987 14.618 16.717 hybrid contribution 0.890 0.979 -2.928 3.213 sum -0.520 -7.009 11.690 13.640 Atomic orbital electron populations 1.21790 0.94809 1.01863 1.00893 1.20762 0.94020 0.93884 0.85795 0.93535 1.21576 0.92854 0.82698 1.00082 0.89735 1.45917 1.61603 1.18777 1.08616 1.16967 0.78737 0.83210 0.84300 1.90830 1.50440 1.65843 1.34249 1.20465 1.07941 0.94507 0.87002 1.20346 1.02265 0.90615 0.97869 1.22650 1.13510 1.01330 0.96320 1.83806 1.63248 1.07899 1.07326 1.25178 1.08214 1.03724 0.95657 1.18970 1.02903 0.91135 1.01269 1.18348 1.05597 0.89415 0.92111 1.42123 1.49607 1.12588 1.09452 0.73582 1.21797 0.95492 1.00622 0.98258 1.21945 0.99407 0.99732 0.96058 1.21366 0.85000 0.97268 0.96459 1.44498 1.02142 1.65745 1.20433 1.18873 0.95802 1.39097 0.85856 0.89124 1.25308 0.97599 0.98360 0.95757 1.69792 1.41257 1.39088 1.04733 0.86956 0.83239 0.81419 0.76964 1.21683 1.23268 1.19547 0.93761 0.91378 0.92662 0.75755 0.82793 0.81144 0.83960 0.91498 0.92256 0.92784 0.92104 0.90946 0.95587 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.73 37.16 0.29 -1.99 16 2 C 0.16 2.85 3.19 -67.59 -0.22 2.64 16 3 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.13 2.13 2.32 -67.81 -0.16 1.98 16 5 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 6 N -0.70 -10.85 3.47 -55.07 -0.19 -11.04 16 7 C 0.58 9.32 7.74 -12.96 -0.10 9.22 16 8 O -0.54 -9.84 16.52 5.16 0.09 -9.76 16 9 C 0.02 0.24 7.01 -82.10 -0.58 -0.34 16 10 C -0.08 -1.14 10.60 -38.95 -0.41 -1.55 16 11 C -0.22 -2.91 7.26 -38.66 -0.28 -3.19 16 12 S 0.12 1.24 23.31 -107.50 -2.51 -1.27 16 13 C -0.19 -1.79 11.13 28.86 0.32 -1.47 16 14 C -0.11 -1.19 10.16 -40.85 -0.42 -1.60 16 15 C 0.06 0.84 7.67 -84.00 -0.64 0.20 16 16 N -0.54 -7.11 6.14 -7.34 -0.05 -7.16 16 17 H 0.42 5.20 8.14 -40.82 -0.33 4.86 16 18 C -0.12 -1.92 5.58 -26.69 -0.15 -2.07 16 19 C -0.13 -2.22 5.93 -26.63 -0.16 -2.38 16 20 C 0.12 2.48 4.20 -3.73 -0.02 2.47 16 21 N -0.60 -12.52 2.41 -164.79 -0.40 -12.91 16 22 C -0.27 -6.54 9.06 -15.06 -0.14 -6.68 16 23 H 0.09 2.32 6.40 -52.48 -0.34 1.98 16 24 C 0.03 0.78 5.24 -17.43 -0.09 0.69 16 25 N -0.91 -25.71 13.97 55.49 0.78 -24.94 16 26 Si 0.88 21.17 24.34 -169.99 -4.14 17.03 16 27 H -0.29 -6.76 6.63 56.52 0.37 -6.39 16 28 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 29 H -0.27 -6.41 6.63 56.52 0.37 -6.03 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 1.24 7.67 -51.93 -0.40 0.84 16 32 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 33 H 0.41 6.45 6.86 -40.82 -0.28 6.17 16 34 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.06 7.53 -51.93 -0.39 0.66 16 41 H 0.07 1.60 4.62 -51.93 -0.24 1.36 16 42 H 0.03 0.53 7.02 -51.93 -0.36 0.16 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -29.23 350.74 -9.51 -38.74 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.64 Total: 10.09 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.74 Total: -4.07 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 0.14 Total: -56.05 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.51 Total: -1.27 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.23 -9.51 -38.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994153040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.114 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds