Wall clock time and date at job start Tue Mar 31 2020 18:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.58848 * 2 1 4 4 C 1.53193 * 109.58705 * 120.28847 * 2 1 3 5 5 H 1.09001 * 109.49191 * 294.51509 * 4 2 1 6 6 N 1.46500 * 109.52722 * 54.59304 * 4 2 1 7 7 C 1.34769 * 120.00429 * 204.85495 * 6 4 2 8 8 O 1.21737 * 119.99653 * 0.02562 * 7 6 4 9 9 C 1.46445 * 120.00456 * 180.02562 * 7 6 4 10 10 C 1.37467 * 125.80658 * 179.69627 * 9 7 6 11 11 C 1.40664 * 107.55086 * 179.84739 * 10 9 7 12 12 S 1.76022 * 142.39278 * 180.02562 * 11 10 9 13 13 C 1.75591 * 91.31095 * 180.36378 * 12 11 10 14 14 C 1.32769 * 110.47490 * 0.02562 * 13 12 11 15 15 C 1.38244 * 108.03677 * 0.41373 * 11 10 9 16 16 N 1.37919 * 125.80464 * 359.97438 * 9 7 6 17 17 H 0.97003 * 125.68249 * 0.02562 * 16 9 7 18 18 C 1.53043 * 109.31033 * 174.56261 * 4 2 1 19 19 C 1.53031 * 109.52657 * 298.63870 * 18 4 2 20 20 C 1.53161 * 109.33026 * 61.37563 * 19 18 4 21 21 N 1.46926 * 108.76733 * 305.35327 * 20 19 18 22 22 C 1.36935 * 120.63409 * 233.62910 * 21 20 19 23 23 H 1.08006 * 119.99896 * 150.89571 * 22 21 20 24 24 C 1.38809 * 120.00054 * 330.89882 * 22 21 20 25 25 N 1.31616 * 120.00367 * 160.72526 * 24 22 21 26 26 Si 1.86799 * 119.99820 * 340.72973 * 24 22 21 27 27 H 1.48502 * 109.47406 * 92.26933 * 26 24 22 28 28 H 1.48504 * 109.47139 * 212.27074 * 26 24 22 29 29 H 1.48494 * 109.47265 * 332.26801 * 26 24 22 30 30 H 1.09000 * 109.46449 * 299.71771 * 1 2 3 31 31 H 1.08998 * 109.47102 * 59.71018 * 1 2 3 32 32 H 1.08994 * 109.47061 * 179.71638 * 1 2 3 33 33 H 0.97005 * 119.99804 * 24.85272 * 6 4 2 34 34 H 1.07994 * 126.22349 * 359.96874 * 10 9 7 35 35 H 1.08002 * 124.76252 * 179.97438 * 13 12 11 36 36 H 1.07993 * 122.16210 * 180.02562 * 14 13 12 37 37 H 1.08999 * 109.45941 * 58.65371 * 18 4 2 38 38 H 1.08998 * 109.45775 * 178.62719 * 18 4 2 39 39 H 1.09003 * 109.49699 * 181.31210 * 19 18 4 40 40 H 1.09006 * 109.50226 * 301.40691 * 19 18 4 41 41 H 1.08999 * 109.59331 * 185.57370 * 20 19 18 42 42 H 1.08996 * 109.71230 * 65.20509 * 20 19 18 43 43 H 0.97000 * 120.00609 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 1.2463 5 1 1.7639 -0.1655 2.1371 6 7 1.4541 -2.0676 1.3086 7 6 1.3340 -2.6966 2.4945 8 8 1.7150 -2.1512 3.5140 9 6 0.7452 -4.0360 2.5568 10 6 0.5714 -4.7859 3.6957 11 6 -0.0280 -6.0006 3.3163 12 16 -0.6204 -7.5258 3.9653 13 6 -1.0827 -8.0746 2.3627 14 6 -0.7932 -7.1508 1.4540 15 6 -0.2046 -5.9810 1.9453 16 7 0.2758 -4.7618 1.4820 17 1 0.2806 -4.4702 0.5569 18 6 3.5679 -0.8435 1.1727 19 6 3.9600 -1.6607 -0.0602 20 6 3.4685 -0.9436 -1.3211 21 7 2.0254 -0.6991 -1.1937 22 6 1.1584 -1.1151 -2.1686 23 1 0.1413 -1.3728 -1.9126 24 6 1.5868 -1.2056 -3.4858 25 7 0.9167 -1.9419 -4.3467 26 14 3.1145 -0.2825 -4.0366 27 1 4.3015 -1.1645 -3.9014 28 1 2.9609 0.1266 -5.4559 29 1 3.2956 0.9244 -3.1905 30 1 -0.3632 0.5095 0.8925 31 1 -0.3633 0.5183 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.1501 -2.5020 0.4963 34 1 0.8435 -4.4946 4.6993 35 1 -1.5378 -9.0298 2.1463 36 1 -0.9996 -7.2931 0.4036 37 1 4.0046 0.1527 1.1020 38 1 3.9381 -1.3395 2.0700 39 1 5.0446 -1.7625 -0.0994 40 1 3.5034 -2.6488 -0.0022 41 1 3.6575 -1.5684 -2.1941 42 1 3.9917 0.0062 -1.4314 43 1 1.2162 -2.0055 -5.2671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994153040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:47 Heat of formation + Delta-G solvation = 40.794161 kcal Electronic energy + Delta-G solvation = -26947.833896 eV Core-core repulsion = 23313.213479 eV Total energy + Delta-G solvation = -3634.620417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.39950 -40.96642 -39.22730 -36.23706 -35.74674 -34.27233 -33.54743 -32.13427 -31.72729 -29.30121 -27.95327 -26.70892 -24.94371 -24.11804 -23.42025 -22.37306 -21.51429 -20.91736 -20.46429 -19.69798 -18.40591 -17.64926 -17.26608 -16.97230 -16.53409 -16.37057 -15.89936 -15.61948 -15.54438 -15.26479 -15.02155 -14.76508 -14.67890 -14.55028 -14.29708 -13.95773 -13.79989 -13.42538 -13.22569 -12.81613 -12.77763 -12.54861 -12.53970 -12.32406 -12.19170 -11.96674 -11.77260 -11.64141 -11.43345 -11.25840 -11.22789 -10.76360 -10.64371 -10.10815 -9.09835 -8.88483 -8.63302 -8.12191 -5.45471 -0.23460 0.59445 0.87688 1.14183 1.31433 1.44326 1.50292 1.78062 1.81271 2.17150 2.25435 2.44664 3.08025 3.26578 3.71041 3.81649 3.90830 3.96222 4.00715 4.05515 4.21573 4.40841 4.45033 4.50878 4.54822 4.57872 4.75949 4.79614 4.84031 4.89908 4.94435 4.98689 5.04856 5.08480 5.14109 5.24216 5.32209 5.40549 5.44486 5.50814 5.63071 5.91826 6.19839 6.25197 6.50092 6.93127 7.06366 7.65722 8.06240 9.06109 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.015057 B = 0.003595 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.167732 B = 7786.967349 C = 8853.773241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.160 3.840 3 H 0.058 0.942 4 C 0.139 3.861 5 H 0.092 0.908 6 N -0.695 5.695 7 C 0.587 3.413 8 O -0.562 6.562 9 C -0.006 4.006 10 C -0.083 4.083 11 C -0.248 4.248 12 S 0.141 5.859 13 C -0.168 4.168 14 C -0.135 4.135 15 C 0.062 3.938 16 N -0.536 5.536 17 H 0.426 0.574 18 C -0.117 4.117 19 C -0.123 4.123 20 C 0.120 3.880 21 N -0.611 5.611 22 C -0.235 4.235 23 H 0.074 0.926 24 C -0.026 4.026 25 N -0.953 5.953 26 Si 0.933 3.067 27 H -0.282 1.282 28 H -0.321 1.321 29 H -0.263 1.263 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.404 0.596 34 H 0.158 0.842 35 H 0.208 0.792 36 H 0.159 0.841 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -8.523 14.457 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.076 0.924 4 C 0.033 3.967 5 H 0.110 0.890 6 N -0.345 5.345 7 C 0.375 3.625 8 O -0.442 6.442 9 C -0.121 4.121 10 C -0.114 4.114 11 C -0.368 4.368 12 S 0.400 5.600 13 C -0.304 4.304 14 C -0.167 4.167 15 C -0.058 4.058 16 N -0.139 5.139 17 H 0.266 0.734 18 C -0.156 4.156 19 C -0.162 4.162 20 C -0.004 4.004 21 N -0.336 5.336 22 C -0.364 4.364 23 H 0.092 0.908 24 C -0.221 4.221 25 N -0.599 5.599 26 Si 0.764 3.236 27 H -0.209 1.209 28 H -0.251 1.251 29 H -0.188 1.188 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.240 0.760 34 H 0.175 0.825 35 H 0.225 0.775 36 H 0.177 0.823 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.040 -8.668 16.266 18.461 hybrid contribution 0.688 1.087 -3.295 3.538 sum -0.353 -7.581 12.970 15.028 Atomic orbital electron populations 1.21726 0.94379 1.01449 1.01237 1.20933 0.94435 0.94243 0.84914 0.92422 1.21502 0.93273 0.82726 0.99202 0.88988 1.45873 1.61496 1.18662 1.08453 1.17048 0.78156 0.83499 0.83812 1.90805 1.51787 1.66663 1.34934 1.20265 1.09704 0.94404 0.87731 1.20511 1.01878 0.91071 0.97935 1.22958 1.14423 1.02439 0.96970 1.83749 1.62486 1.05962 1.07782 1.25697 1.05768 1.04369 0.94551 1.19213 1.04112 0.90774 1.02617 1.18851 1.04915 0.89640 0.92381 1.42081 1.49739 1.12786 1.09255 0.73412 1.21766 0.94994 1.01295 0.97539 1.21831 1.00535 0.98939 0.94886 1.21389 0.84423 0.97419 0.97214 1.44592 1.02270 1.66321 1.20461 1.18856 0.95428 1.35926 0.86209 0.90808 1.25790 1.00114 0.99926 0.96312 1.69903 1.43481 1.41707 1.04831 0.86142 0.81212 0.80676 0.75560 1.20922 1.25072 1.18759 0.91195 0.93237 0.93464 0.76018 0.82457 0.77543 0.82337 0.89900 0.92006 0.90733 0.93019 0.93214 0.95009 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.73 71.98 0.56 -3.68 16 2 C 0.16 5.37 3.19 44.98 0.14 5.51 16 3 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 4 C 0.14 4.17 2.32 45.07 0.10 4.27 16 5 H 0.09 2.70 7.58 -2.39 -0.02 2.69 16 6 N -0.70 -21.06 3.47 -446.33 -1.55 -22.61 16 7 C 0.59 18.57 7.74 86.38 0.67 19.24 16 8 O -0.56 -20.29 16.52 -4.47 -0.07 -20.37 16 9 C -0.01 -0.18 7.01 40.14 0.28 0.10 16 10 C -0.08 -2.33 10.60 22.68 0.24 -2.09 16 11 C -0.25 -6.39 7.26 22.86 0.17 -6.22 16 12 S 0.14 2.65 23.31 -56.49 -1.32 1.33 16 13 C -0.17 -2.61 11.13 66.64 0.74 -1.87 16 14 C -0.13 -2.64 10.16 21.49 0.22 -2.42 16 15 C 0.06 1.57 7.67 38.40 0.29 1.87 16 16 N -0.54 -14.20 6.14 -177.14 -1.09 -15.28 16 17 H 0.43 10.58 8.14 -92.71 -0.75 9.83 16 18 C -0.12 -3.36 5.58 30.62 0.17 -3.19 16 19 C -0.12 -3.87 5.93 30.66 0.18 -3.69 16 20 C 0.12 4.61 4.20 86.35 0.36 4.97 16 21 N -0.61 -24.75 2.41 -675.26 -1.63 -26.37 16 22 C -0.23 -11.50 9.06 84.03 0.76 -10.74 16 23 H 0.07 3.84 6.40 -2.91 -0.02 3.82 16 24 C -0.03 -1.41 5.24 84.86 0.44 -0.96 16 25 N -0.95 -55.57 13.97 21.65 0.30 -55.27 16 26 Si 0.93 44.02 24.34 68.60 1.67 45.69 16 27 H -0.28 -12.80 6.63 99.48 0.66 -12.14 16 28 H -0.32 -15.90 7.11 99.48 0.71 -15.20 16 29 H -0.26 -11.90 6.63 99.48 0.66 -11.24 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.78 7.67 -2.39 -0.02 1.76 16 32 H 0.05 1.59 6.39 -2.39 -0.02 1.58 16 33 H 0.40 12.74 6.86 -92.70 -0.64 12.11 16 34 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.72 7.53 -2.38 -0.02 1.70 16 41 H 0.05 2.15 4.62 -2.39 -0.01 2.14 16 42 H 0.03 1.20 7.02 -2.39 -0.02 1.18 16 43 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -63.03 350.74 1.24 -61.79 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.42 Total: 30.00 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.34 Total: 1.09 kcal Atomic # 7 Polarization: -115.58 SS G_CDS: -3.96 Total: -119.53 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.67 Total: 45.69 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.32 Total: 1.33 kcal Total: -63.03 1.24 -61.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994153040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.587 kcal (2) G-P(sol) polarization free energy of solvation -63.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds