Wall clock time and date at job start Tue Mar 31 2020 18:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 H 1.09011 * 109.63268 * 54.55890 * 4 2 1 6 6 N 1.46494 * 109.45930 * 294.43083 * 4 2 1 7 7 C 1.34776 * 120.00258 * 155.26959 * 6 4 2 8 8 O 1.21738 * 119.99938 * 0.02562 * 7 6 4 9 9 C 1.46454 * 120.00276 * 180.02562 * 7 6 4 10 10 C 1.37468 * 125.80362 * 179.69291 * 9 7 6 11 11 C 1.40662 * 107.55111 * 179.87782 * 10 9 7 12 12 S 1.76017 * 142.39377 * 180.02562 * 11 10 9 13 13 C 1.75597 * 91.31044 * 180.34162 * 12 11 10 14 14 C 1.32770 * 110.47302 * 0.02562 * 13 12 11 15 15 C 1.38250 * 108.03458 * 0.38486 * 11 10 9 16 16 N 1.37918 * 125.80399 * 0.02562 * 9 7 6 17 17 H 0.96992 * 125.68494 * 359.95761 * 16 9 7 18 18 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 19 19 C 1.53042 * 109.53755 * 298.51130 * 18 4 2 20 20 C 1.53197 * 109.31056 * 61.36512 * 19 18 4 21 21 N 1.46924 * 108.77415 * 305.36136 * 20 19 18 22 22 C 1.36943 * 120.62995 * 233.58592 * 21 20 19 23 23 H 1.07999 * 119.99741 * 150.98933 * 22 21 20 24 24 C 1.38811 * 119.99970 * 330.98603 * 22 21 20 25 25 N 1.31620 * 120.00262 * 344.98836 * 24 22 21 26 26 Si 1.86799 * 119.99624 * 164.98484 * 24 22 21 27 27 H 1.48499 * 109.46917 * 180.02562 * 26 24 22 28 28 H 1.48504 * 109.47363 * 300.00138 * 26 24 22 29 29 H 1.48504 * 109.47236 * 60.00138 * 26 24 22 30 30 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 31 31 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 32 32 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 33 33 H 0.96997 * 119.99812 * 335.27629 * 6 4 2 34 34 H 1.07995 * 126.22393 * 0.02562 * 10 9 7 35 35 H 1.08000 * 124.76115 * 179.97438 * 13 12 11 36 36 H 1.07999 * 122.16175 * 180.02562 * 14 13 12 37 37 H 1.08990 * 109.46171 * 178.49446 * 18 4 2 38 38 H 1.08995 * 109.44846 * 58.52159 * 18 4 2 39 39 H 1.08998 * 109.49938 * 301.41676 * 19 18 4 40 40 H 1.09004 * 109.52569 * 181.32617 * 19 18 4 41 41 H 1.09003 * 109.58227 * 185.57834 * 20 19 18 42 42 H 1.08999 * 109.70422 * 65.22304 * 20 19 18 43 43 H 0.97000 * 120.00257 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 1 1.6096 -1.7338 1.2888 6 7 1.6733 0.0145 2.4464 7 6 1.5567 -0.6210 3.6292 8 8 1.7624 -1.8188 3.6995 9 6 1.1825 0.1295 4.8299 10 6 1.0244 -0.3964 6.0902 11 6 0.6671 0.6592 6.9485 12 16 0.2702 1.0199 8.6249 13 6 0.0344 2.7182 8.2459 14 6 0.2484 2.9398 6.9544 15 6 0.6030 1.8183 6.1976 16 7 0.9227 1.4827 4.8873 17 1 0.9577 2.0978 4.1382 18 6 3.5712 -0.8499 1.1675 19 6 3.9615 -1.6628 -0.0690 20 6 3.4656 -0.9419 -1.3265 21 7 2.0225 -0.6995 -1.1945 22 6 1.1536 -1.1126 -2.1691 23 1 0.1371 -1.3711 -1.9119 24 6 1.5795 -1.1990 -3.4874 25 7 2.7005 -0.6163 -3.8565 26 14 0.5617 -2.1426 -4.7377 27 1 1.2287 -2.0855 -6.0632 28 1 0.4370 -3.5584 -4.3074 29 1 -0.7895 -1.5344 -4.8363 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5193 0.8869 32 1 -0.3633 0.5083 -0.8931 33 1 1.5097 0.9689 2.3904 34 1 1.1535 -1.4312 6.3707 35 1 -0.2460 3.4759 8.9625 36 1 0.1554 3.9227 6.5166 37 1 3.9443 -1.3481 2.0622 38 1 4.0064 0.1471 1.0988 39 1 3.5060 -2.6515 -0.0130 40 1 5.0460 -1.7636 -0.1114 41 1 3.6531 -1.5637 -2.2020 42 1 3.9875 0.0088 -1.4350 43 1 2.9983 -0.6770 -4.7777 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994153042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:53 Heat of formation + Delta-G solvation = 34.235460 kcal Electronic energy + Delta-G solvation = -26100.746451 eV Core-core repulsion = 22465.841627 eV Total energy + Delta-G solvation = -3634.904824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.40903 -40.80285 -39.16039 -36.24335 -35.99246 -34.30129 -33.46306 -32.01565 -31.18469 -29.25448 -27.80950 -26.87986 -24.89695 -23.95424 -22.91826 -22.37501 -21.46370 -21.37515 -20.65895 -19.65827 -18.28443 -17.56462 -17.35325 -16.74335 -16.43863 -16.37585 -15.72169 -15.62859 -15.48116 -15.18415 -15.01538 -14.91749 -14.61055 -14.47982 -14.31182 -13.85268 -13.37121 -13.27273 -12.81615 -12.81375 -12.73989 -12.57284 -12.53015 -12.40770 -12.03635 -11.87972 -11.80633 -11.73799 -11.68367 -11.33867 -11.11720 -10.76478 -10.52939 -10.17471 -9.10457 -8.67231 -8.64105 -7.86397 -5.32699 -0.24590 0.59470 0.86186 1.17422 1.46373 1.49541 1.54932 1.74192 1.79522 2.05321 2.21479 2.52687 3.29164 3.56443 3.71187 3.84094 3.87965 3.99987 4.00713 4.18148 4.33975 4.39292 4.48233 4.54837 4.58593 4.73285 4.78345 4.85463 4.88332 4.95852 5.01521 5.09790 5.11564 5.15333 5.23962 5.39267 5.42759 5.43548 5.55113 5.58744 5.69443 5.76388 6.29028 6.40841 6.47285 7.03573 7.15772 7.85440 8.36462 9.20156 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027199 B = 0.002416 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.190094 B =11587.770824 C =11897.879630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.166 3.834 3 H 0.037 0.963 4 C 0.147 3.853 5 H 0.062 0.938 6 N -0.701 5.701 7 C 0.588 3.412 8 O -0.565 6.565 9 C -0.001 4.001 10 C -0.086 4.086 11 C -0.252 4.252 12 S 0.127 5.873 13 C -0.169 4.169 14 C -0.128 4.128 15 C 0.071 3.929 16 N -0.529 5.529 17 H 0.433 0.567 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.175 3.825 21 N -0.600 5.600 22 C -0.254 4.254 23 H 0.072 0.928 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.960 3.040 27 H -0.295 1.295 28 H -0.283 1.283 29 H -0.275 1.275 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.408 0.592 34 H 0.149 0.851 35 H 0.207 0.793 36 H 0.170 0.830 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.005 0.995 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.190 10.182 23.904 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.059 3.941 3 H 0.054 0.946 4 C 0.041 3.959 5 H 0.081 0.919 6 N -0.351 5.351 7 C 0.376 3.624 8 O -0.444 6.444 9 C -0.116 4.116 10 C -0.117 4.117 11 C -0.372 4.372 12 S 0.386 5.614 13 C -0.304 4.304 14 C -0.160 4.160 15 C -0.049 4.049 16 N -0.133 5.133 17 H 0.274 0.726 18 C -0.149 4.149 19 C -0.169 4.169 20 C 0.049 3.951 21 N -0.323 5.323 22 C -0.385 4.385 23 H 0.090 0.910 24 C -0.243 4.243 25 N -0.579 5.579 26 Si 0.789 3.211 27 H -0.221 1.221 28 H -0.209 1.209 29 H -0.200 1.200 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.244 0.756 34 H 0.167 0.833 35 H 0.224 0.776 36 H 0.187 0.813 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.023 0.977 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.081 8.595 24.884 26.641 hybrid contribution -0.085 0.708 -2.896 2.983 sum -4.166 9.303 21.988 24.235 Atomic orbital electron populations 1.21742 0.94448 1.01176 1.01285 1.20800 0.94221 0.93488 0.85610 0.94564 1.21496 0.95094 0.95737 0.83609 0.91947 1.45751 1.69621 1.12536 1.07228 1.17145 0.76797 0.86296 0.82179 1.90859 1.52427 1.15468 1.85634 1.19990 1.13180 0.83486 0.94937 1.20521 1.03111 0.98629 0.89459 1.22934 1.16872 0.97734 0.99648 1.83964 1.71992 1.03495 1.01935 1.25728 1.05988 0.99428 0.99307 1.19209 1.05862 0.98059 0.92911 1.18819 1.06417 0.95231 0.84473 1.41858 1.56221 1.06911 1.08295 0.72634 1.21695 0.95116 1.00512 0.97558 1.22023 1.00382 0.98790 0.95723 1.20660 0.83083 0.96220 0.95117 1.44270 1.03119 1.65900 1.19052 1.19407 0.95279 1.37078 0.86693 0.91015 1.25746 0.99024 1.00836 0.98699 1.70145 1.24977 1.45905 1.16856 0.85451 0.78483 0.78949 0.78219 1.22140 1.20915 1.20028 0.94023 0.90802 0.93069 0.75578 0.83283 0.77570 0.81256 0.92564 0.91413 0.93675 0.90874 0.92568 0.97674 0.94188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.47 7.83 71.98 0.56 -3.91 16 2 C 0.17 6.27 3.05 45.12 0.14 6.41 16 3 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 4 C 0.15 5.03 2.01 45.21 0.09 5.12 16 5 H 0.06 2.54 7.58 -2.38 -0.02 2.52 16 6 N -0.70 -18.47 4.60 -445.63 -2.05 -20.52 16 7 C 0.59 17.33 7.74 86.38 0.67 18.00 16 8 O -0.57 -21.43 16.52 -4.47 -0.07 -21.50 16 9 C 0.00 -0.03 7.01 40.15 0.28 0.25 16 10 C -0.09 -2.17 10.60 22.68 0.24 -1.93 16 11 C -0.25 -5.45 7.26 22.86 0.17 -5.28 16 12 S 0.13 1.97 23.31 -56.49 -1.32 0.66 16 13 C -0.17 -1.74 11.13 66.64 0.74 -1.00 16 14 C -0.13 -1.55 10.16 21.49 0.22 -1.34 16 15 C 0.07 1.29 7.67 38.40 0.29 1.59 16 16 N -0.53 -9.35 6.14 -177.14 -1.09 -10.44 16 17 H 0.43 4.90 8.14 -92.71 -0.75 4.14 16 18 C -0.11 -3.75 5.46 30.62 0.17 -3.58 16 19 C -0.13 -5.00 6.08 30.67 0.19 -4.82 16 20 C 0.17 8.25 5.28 86.36 0.46 8.71 16 21 N -0.60 -28.78 2.99 -674.40 -2.01 -30.79 16 22 C -0.25 -13.44 8.59 84.03 0.72 -12.72 16 23 H 0.07 3.69 6.22 -2.91 -0.02 3.68 16 24 C -0.05 -2.60 4.96 84.86 0.42 -2.18 16 25 N -0.93 -53.86 11.14 21.65 0.24 -53.62 16 26 Si 0.96 44.43 29.58 68.60 2.03 46.46 16 27 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 28 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 29 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 30 H 0.04 1.55 7.44 -2.39 -0.02 1.54 16 31 H 0.07 1.97 7.82 -2.39 -0.02 1.95 16 32 H 0.05 1.91 7.62 -2.39 -0.02 1.90 16 33 H 0.41 7.89 7.68 -92.71 -0.71 7.18 16 34 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 35 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 37 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.06 3.03 6.06 -2.39 -0.01 3.02 16 42 H 0.01 0.25 8.14 -2.39 -0.02 0.24 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -69.45 360.35 0.68 -68.77 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -0.41 Total: 17.67 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.36 Total: 3.33 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.91 Total: -115.38 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.32 Total: 0.66 kcal Total: -69.45 0.68 -68.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994153042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.003 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds