Wall clock time and date at job start Tue Mar 31 2020 18:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.70405 * 2 1 4 4 C 1.53201 * 109.58461 * 239.64921 * 2 1 3 5 5 H 1.08998 * 109.52129 * 65.60927 * 4 2 1 6 6 N 1.46502 * 109.49450 * 305.52868 * 4 2 1 7 7 C 1.34775 * 119.99946 * 155.15705 * 6 4 2 8 8 O 1.21742 * 119.99852 * 0.02562 * 7 6 4 9 9 C 1.46410 * 120.00225 * 179.97438 * 7 6 4 10 10 C 1.35777 * 124.95946 * 180.02562 * 9 7 6 11 11 C 1.38873 * 115.18543 * 179.97438 * 10 9 7 12 12 N 1.39746 * 139.91498 * 180.02562 * 11 10 9 13 13 H 0.97003 * 125.63233 * 359.95523 * 12 11 10 14 14 C 1.36219 * 108.73537 * 179.97438 * 12 11 10 15 15 C 1.34502 * 109.29541 * 359.97438 * 14 12 11 16 16 C 1.38239 * 113.39449 * 0.02562 * 11 10 9 17 17 S 1.75622 * 124.95885 * 359.69893 * 9 7 6 18 18 C 1.53034 * 109.31525 * 185.58015 * 4 2 1 19 19 C 1.53046 * 109.53675 * 61.36164 * 18 4 2 20 20 C 1.53190 * 109.31700 * 298.63508 * 19 18 4 21 21 N 1.46921 * 109.58886 * 120.36258 * 2 1 3 22 22 C 1.36938 * 120.63042 * 353.37114 * 21 2 1 23 23 H 1.08004 * 119.99844 * 29.02119 * 22 21 2 24 24 C 1.38815 * 120.00249 * 209.02815 * 22 21 2 25 25 N 1.31620 * 119.99826 * 15.02433 * 24 22 21 26 26 Si 1.86795 * 120.00125 * 195.02386 * 24 22 21 27 27 H 1.48498 * 109.47499 * 90.00019 * 26 24 22 28 28 H 1.48507 * 109.47021 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47383 * 329.99580 * 26 24 22 30 30 H 1.08997 * 109.47482 * 180.35317 * 1 2 3 31 31 H 1.09008 * 109.46596 * 300.35278 * 1 2 3 32 32 H 1.08999 * 109.47043 * 60.34952 * 1 2 3 33 33 H 0.96995 * 120.00367 * 335.16380 * 6 4 2 34 34 H 1.08002 * 122.40930 * 359.97438 * 10 9 7 35 35 H 1.07993 * 125.35253 * 180.02562 * 14 12 11 36 36 H 1.08003 * 126.07994 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.46423 * 181.38400 * 18 4 2 38 38 H 1.09003 * 109.45855 * 301.34545 * 18 4 2 39 39 H 1.08996 * 109.49753 * 58.58995 * 19 18 4 40 40 H 1.09005 * 109.49537 * 178.68591 * 19 18 4 41 41 H 1.08996 * 109.58862 * 174.42255 * 20 19 18 42 42 H 1.09007 * 109.58826 * 294.85278 * 20 19 18 43 43 H 0.96996 * 120.00292 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7293 -1.2456 5 1 1.7659 -0.1672 -2.1372 6 7 1.4513 -2.0679 -1.3073 7 6 1.3311 -2.6976 -2.4928 8 8 1.7151 -2.1542 -3.5123 9 6 0.7398 -4.0355 -2.5545 10 6 0.5709 -4.7599 -3.6904 11 6 -0.0121 -6.0079 -3.5143 12 7 -0.4067 -7.1192 -4.2642 13 1 -0.3172 -7.2128 -5.2256 14 6 -0.9380 -8.0489 -3.4223 15 6 -0.9004 -7.5804 -2.1621 16 6 -0.3192 -6.2892 -2.1961 17 16 0.1527 -4.9411 -1.1690 18 6 3.5674 -0.8480 -1.1704 19 6 3.9568 -1.6659 0.0632 20 6 3.4651 -0.9472 1.3236 21 7 2.0226 -0.6997 1.1943 22 6 1.1538 -1.1129 2.1688 23 1 0.1359 -1.3671 1.9124 24 6 1.5813 -1.2049 3.4863 25 7 2.7046 -0.6268 3.8556 26 14 0.5623 -2.1491 4.7351 27 1 0.9962 -3.5692 4.7560 28 1 0.7534 -1.5533 6.0819 29 1 -0.8727 -2.0755 4.3604 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.1456 -2.5009 -0.4950 34 1 0.8686 -4.3919 -4.6612 35 1 -1.3275 -9.0112 -3.7199 36 1 -1.2515 -8.0967 -1.2809 37 1 3.9377 -1.3448 -2.0672 38 1 4.0061 0.1473 -1.0995 39 1 3.4982 -2.6529 0.0050 40 1 5.0411 -1.7698 0.1034 41 1 3.6518 -1.5721 2.1969 42 1 3.9904 0.0018 1.4316 43 1 3.0035 -0.6914 4.7760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994299623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:59 Heat of formation + Delta-G solvation = 56.603138 kcal Electronic energy + Delta-G solvation = -26751.088830 eV Core-core repulsion = 23117.153942 eV Total energy + Delta-G solvation = -3633.934888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27056 -39.70026 -37.63714 -35.02398 -33.91843 -32.40962 -31.70833 -31.03805 -29.63368 -28.07455 -26.24104 -25.01949 -24.04974 -22.19395 -21.51263 -20.86542 -20.70358 -19.57208 -18.84821 -18.32972 -16.77942 -16.42282 -15.48336 -15.41774 -15.05506 -14.95722 -14.54088 -14.41808 -13.89275 -13.84998 -13.58248 -13.42002 -13.06764 -13.01254 -12.78864 -12.55382 -12.01147 -11.83759 -11.53391 -11.24616 -11.21858 -10.95112 -10.81088 -10.69926 -10.59367 -10.49565 -10.08799 -9.99359 -9.76018 -9.74554 -9.62825 -9.29631 -8.59512 -8.46114 -8.15115 -7.69243 -6.67461 -5.79702 -3.25244 0.56972 1.47654 2.02872 2.35182 2.55723 2.84966 3.36949 3.44285 3.44895 3.47943 3.61317 4.46759 4.75116 4.79418 4.96007 5.25775 5.33051 5.35036 5.36491 5.58435 5.61406 5.70421 5.76304 5.87349 5.95430 5.98601 6.13151 6.23784 6.34180 6.39136 6.43318 6.54581 6.61692 6.68089 6.69936 6.79641 6.95356 6.97430 7.09320 7.24809 7.40687 7.68839 7.79630 7.95564 8.43095 8.53467 9.19415 9.82179 10.38941 11.28094 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.004141 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.475868 B = 6759.250118 C = 8187.059393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.079 0.921 6 N -0.693 5.693 7 C 0.585 3.415 8 O -0.546 6.546 9 C -0.228 4.228 10 C -0.042 4.042 11 C 0.025 3.975 12 N -0.560 5.560 13 H 0.418 0.582 14 C 0.052 3.948 15 C -0.170 4.170 16 C -0.194 4.194 17 S 0.184 5.816 18 C -0.121 4.121 19 C -0.142 4.142 20 C 0.171 3.829 21 N -0.587 5.587 22 C -0.256 4.256 23 H 0.071 0.929 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.898 3.102 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.408 0.592 34 H 0.147 0.853 35 H 0.176 0.824 36 H 0.146 0.854 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.088 0.912 42 H 0.018 0.982 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 -11.937 -13.990 19.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.052 3.948 3 H 0.059 0.941 4 C 0.028 3.972 5 H 0.097 0.903 6 N -0.343 5.343 7 C 0.371 3.629 8 O -0.427 6.427 9 C -0.349 4.349 10 C -0.078 4.078 11 C -0.089 4.089 12 N -0.161 5.161 13 H 0.255 0.745 14 C -0.081 4.081 15 C -0.200 4.200 16 C -0.316 4.316 17 S 0.448 5.552 18 C -0.160 4.160 19 C -0.181 4.181 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.386 4.386 23 H 0.089 0.911 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.728 3.272 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.245 0.755 34 H 0.164 0.836 35 H 0.193 0.807 36 H 0.164 0.836 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.036 0.964 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.053 -11.179 -13.066 17.923 hybrid contribution -0.434 -1.135 -0.840 1.477 sum -5.487 -12.314 -13.906 19.368 Atomic orbital electron populations 1.21799 0.95596 1.01533 1.00539 1.20729 0.93395 0.93967 0.86738 0.94080 1.21614 0.93032 0.82482 1.00077 0.90330 1.45879 1.61155 1.18800 1.08453 1.16859 0.78539 0.83264 0.84283 1.90784 1.50950 1.66547 1.34380 1.23924 1.13008 1.00632 0.97351 1.19159 0.98979 0.90239 0.99462 1.18012 1.08945 0.91803 0.90113 1.41868 1.51894 1.13100 1.09261 0.74482 1.21819 1.01718 0.95097 0.89464 1.20142 1.08869 0.93740 0.97254 1.23326 1.10398 1.01429 0.96493 1.84271 1.60015 1.05602 1.05337 1.21780 0.95297 1.00561 0.98358 1.22158 0.99009 0.99598 0.97315 1.20826 0.83065 0.97207 0.94373 1.44181 1.03188 1.64859 1.18815 1.19179 0.94838 1.38220 0.86314 0.91116 1.25074 0.97701 0.99494 0.96934 1.70017 1.23247 1.44243 1.16904 0.86357 0.79967 0.79867 0.81002 1.21355 1.21849 1.20343 0.92801 0.91659 0.94107 0.75541 0.83576 0.80670 0.83597 0.93042 0.91761 0.92865 0.93379 0.89348 0.96374 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.72 37.16 0.29 -2.23 16 2 C 0.16 3.16 3.20 -67.60 -0.22 2.94 16 3 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.13 2.44 2.32 -67.81 -0.16 2.28 16 5 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 6 N -0.69 -12.33 3.46 -55.07 -0.19 -12.52 16 7 C 0.59 10.38 7.74 -12.97 -0.10 10.27 16 8 O -0.55 -10.85 16.44 5.15 0.08 -10.77 16 9 C -0.23 -3.56 6.38 -37.18 -0.24 -3.80 16 10 C -0.04 -0.58 9.88 -40.23 -0.40 -0.98 16 11 C 0.02 0.31 7.67 -84.01 -0.64 -0.33 16 12 N -0.56 -4.83 6.21 -10.90 -0.07 -4.90 16 13 H 0.42 2.23 8.96 -40.82 -0.37 1.86 16 14 C 0.05 0.41 11.85 -16.92 -0.20 0.21 16 15 C -0.17 -1.77 10.85 -39.61 -0.43 -2.20 16 16 C -0.19 -2.57 7.31 -38.28 -0.28 -2.85 16 17 S 0.18 2.66 22.29 -107.50 -2.40 0.27 16 18 C -0.12 -2.19 5.58 -26.69 -0.15 -2.34 16 19 C -0.14 -2.73 5.93 -26.61 -0.16 -2.89 16 20 C 0.17 3.91 5.29 -3.71 -0.02 3.89 16 21 N -0.59 -13.55 2.65 -164.77 -0.44 -13.98 16 22 C -0.26 -6.44 8.61 -15.06 -0.13 -6.57 16 23 H 0.07 1.73 6.20 -52.48 -0.33 1.41 16 24 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 25 N -0.90 -25.08 11.14 55.49 0.62 -24.46 16 26 Si 0.90 20.87 29.58 -169.99 -5.03 15.84 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 31 H 0.06 1.27 7.66 -51.92 -0.40 0.88 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 7.49 6.82 -40.82 -0.28 7.21 16 34 H 0.15 1.87 8.00 -52.49 -0.42 1.45 16 35 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.06 7.53 -51.93 -0.39 0.66 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -30.67 356.84 -10.69 -41.36 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.74 Total: 8.27 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.92 Total: -4.49 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.08 Total: -55.86 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.40 Total: 0.27 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.67 -10.69 -41.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.964 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds