Wall clock time and date at job start Tue Mar 31 2020 18:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.70405 * 2 1 4 4 C 1.53201 * 109.58461 * 239.64921 * 2 1 3 5 5 H 1.08998 * 109.52129 * 65.60927 * 4 2 1 6 6 N 1.46502 * 109.49450 * 305.52868 * 4 2 1 7 7 C 1.34775 * 119.99946 * 155.15705 * 6 4 2 8 8 O 1.21742 * 119.99852 * 0.02562 * 7 6 4 9 9 C 1.46410 * 120.00225 * 179.97438 * 7 6 4 10 10 C 1.35777 * 124.95946 * 180.02562 * 9 7 6 11 11 C 1.38873 * 115.18543 * 179.97438 * 10 9 7 12 12 N 1.39746 * 139.91498 * 180.02562 * 11 10 9 13 13 H 0.97003 * 125.63233 * 359.95523 * 12 11 10 14 14 C 1.36219 * 108.73537 * 179.97438 * 12 11 10 15 15 C 1.34502 * 109.29541 * 359.97438 * 14 12 11 16 16 C 1.38239 * 113.39449 * 0.02562 * 11 10 9 17 17 S 1.75622 * 124.95885 * 359.69893 * 9 7 6 18 18 C 1.53034 * 109.31525 * 185.58015 * 4 2 1 19 19 C 1.53046 * 109.53675 * 61.36164 * 18 4 2 20 20 C 1.53190 * 109.31700 * 298.63508 * 19 18 4 21 21 N 1.46921 * 109.58886 * 120.36258 * 2 1 3 22 22 C 1.36938 * 120.63042 * 353.37114 * 21 2 1 23 23 H 1.08004 * 119.99844 * 29.02119 * 22 21 2 24 24 C 1.38815 * 120.00249 * 209.02815 * 22 21 2 25 25 N 1.31620 * 119.99826 * 15.02433 * 24 22 21 26 26 Si 1.86795 * 120.00125 * 195.02386 * 24 22 21 27 27 H 1.48498 * 109.47499 * 90.00019 * 26 24 22 28 28 H 1.48507 * 109.47021 * 210.00015 * 26 24 22 29 29 H 1.48496 * 109.47383 * 329.99580 * 26 24 22 30 30 H 1.08997 * 109.47482 * 180.35317 * 1 2 3 31 31 H 1.09008 * 109.46596 * 300.35278 * 1 2 3 32 32 H 1.08999 * 109.47043 * 60.34952 * 1 2 3 33 33 H 0.96995 * 120.00367 * 335.16380 * 6 4 2 34 34 H 1.08002 * 122.40930 * 359.97438 * 10 9 7 35 35 H 1.07993 * 125.35253 * 180.02562 * 14 12 11 36 36 H 1.08003 * 126.07994 * 180.02562 * 15 14 12 37 37 H 1.09002 * 109.46423 * 181.38400 * 18 4 2 38 38 H 1.09003 * 109.45855 * 301.34545 * 18 4 2 39 39 H 1.08996 * 109.49753 * 58.58995 * 19 18 4 40 40 H 1.09005 * 109.49537 * 178.68591 * 19 18 4 41 41 H 1.08996 * 109.58862 * 174.42255 * 20 19 18 42 42 H 1.09007 * 109.58826 * 294.85278 * 20 19 18 43 43 H 0.96996 * 120.00292 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7293 -1.2456 5 1 1.7659 -0.1672 -2.1372 6 7 1.4513 -2.0679 -1.3073 7 6 1.3311 -2.6976 -2.4928 8 8 1.7151 -2.1542 -3.5123 9 6 0.7398 -4.0355 -2.5545 10 6 0.5709 -4.7599 -3.6904 11 6 -0.0121 -6.0079 -3.5143 12 7 -0.4067 -7.1192 -4.2642 13 1 -0.3172 -7.2128 -5.2256 14 6 -0.9380 -8.0489 -3.4223 15 6 -0.9004 -7.5804 -2.1621 16 6 -0.3192 -6.2892 -2.1961 17 16 0.1527 -4.9411 -1.1690 18 6 3.5674 -0.8480 -1.1704 19 6 3.9568 -1.6659 0.0632 20 6 3.4651 -0.9472 1.3236 21 7 2.0226 -0.6997 1.1943 22 6 1.1538 -1.1129 2.1688 23 1 0.1359 -1.3671 1.9124 24 6 1.5813 -1.2049 3.4863 25 7 2.7046 -0.6268 3.8556 26 14 0.5623 -2.1491 4.7351 27 1 0.9962 -3.5692 4.7560 28 1 0.7534 -1.5533 6.0819 29 1 -0.8727 -2.0755 4.3604 30 1 -0.3634 -1.0276 0.0063 31 1 -0.3633 0.5194 0.8869 32 1 -0.3633 0.5084 -0.8931 33 1 1.1456 -2.5009 -0.4950 34 1 0.8686 -4.3919 -4.6612 35 1 -1.3275 -9.0112 -3.7199 36 1 -1.2515 -8.0967 -1.2809 37 1 3.9377 -1.3448 -2.0672 38 1 4.0061 0.1473 -1.0995 39 1 3.4982 -2.6529 0.0050 40 1 5.0411 -1.7698 0.1034 41 1 3.6518 -1.5721 2.1969 42 1 3.9904 0.0018 1.4316 43 1 3.0035 -0.6914 4.7760 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994299623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:58 Heat of formation + Delta-G solvation = 38.658083 kcal Electronic energy + Delta-G solvation = -26751.866986 eV Core-core repulsion = 23117.153942 eV Total energy + Delta-G solvation = -3634.713044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10594 -41.14072 -39.19448 -36.07742 -35.57286 -34.04146 -33.41400 -31.85540 -31.29182 -29.16828 -27.81594 -26.83926 -25.20004 -23.68219 -22.73339 -22.35742 -21.68585 -20.76192 -20.37603 -19.35676 -18.24794 -17.90710 -17.11527 -16.59646 -16.45127 -16.34588 -15.74487 -15.56856 -15.51781 -15.22007 -14.86222 -14.67336 -14.58316 -14.35825 -14.24232 -13.64610 -13.54425 -12.96979 -12.95211 -12.89104 -12.70904 -12.49081 -12.45374 -12.31703 -12.18485 -11.90499 -11.84986 -11.67405 -11.38081 -11.13458 -11.02913 -10.65632 -10.47485 -10.01299 -9.12221 -8.63235 -8.59844 -7.79481 -5.26020 -0.46878 0.45406 1.01893 1.41330 1.50851 1.53232 1.59843 1.73444 1.98989 2.21043 2.39388 2.55810 3.36630 3.59997 3.75775 3.96977 4.02781 4.06463 4.18200 4.20834 4.26030 4.39549 4.56003 4.57267 4.66217 4.71364 4.82460 4.94626 4.99257 4.99957 5.04267 5.08439 5.12082 5.21601 5.34376 5.44804 5.55312 5.56234 5.61350 5.76007 5.80311 5.81834 6.46294 6.54707 6.64175 7.14447 7.22009 7.91243 8.44099 9.26939 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012862 B = 0.004141 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.475868 B = 6759.250118 C = 8187.059393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.038 0.962 4 C 0.141 3.859 5 H 0.086 0.914 6 N -0.693 5.693 7 C 0.589 3.411 8 O -0.574 6.574 9 C -0.265 4.265 10 C -0.021 4.021 11 C -0.003 4.003 12 N -0.544 5.544 13 H 0.436 0.564 14 C 0.093 3.907 15 C -0.203 4.203 16 C -0.198 4.198 17 S 0.151 5.849 18 C -0.115 4.115 19 C -0.128 4.128 20 C 0.179 3.821 21 N -0.597 5.597 22 C -0.248 4.248 23 H 0.078 0.922 24 C -0.046 4.046 25 N -0.934 5.934 26 Si 0.954 3.046 27 H -0.287 1.287 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.405 0.595 34 H 0.153 0.847 35 H 0.229 0.771 36 H 0.160 0.840 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.057 0.943 42 H -0.002 1.002 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 -14.510 -16.259 22.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.056 0.944 4 C 0.035 3.965 5 H 0.104 0.896 6 N -0.342 5.342 7 C 0.377 3.623 8 O -0.456 6.456 9 C -0.385 4.385 10 C -0.058 4.058 11 C -0.116 4.116 12 N -0.146 5.146 13 H 0.277 0.723 14 C -0.042 4.042 15 C -0.233 4.233 16 C -0.321 4.321 17 S 0.414 5.586 18 C -0.154 4.154 19 C -0.167 4.167 20 C 0.054 3.946 21 N -0.321 5.321 22 C -0.378 4.378 23 H 0.095 0.905 24 C -0.241 4.241 25 N -0.581 5.581 26 Si 0.784 3.216 27 H -0.214 1.214 28 H -0.228 1.228 29 H -0.191 1.191 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.241 0.759 34 H 0.171 0.829 35 H 0.246 0.754 36 H 0.178 0.822 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.016 0.984 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.632 -13.744 -15.390 21.673 hybrid contribution -0.029 -0.503 -0.274 0.574 sum -6.661 -14.247 -15.664 22.197 Atomic orbital electron populations 1.21717 0.94356 1.01514 1.01089 1.20856 0.94456 0.93638 0.86030 0.94424 1.21456 0.93080 0.82827 0.99142 0.89646 1.45834 1.61298 1.18563 1.08543 1.17068 0.77841 0.83853 0.83582 1.90753 1.52387 1.67521 1.34976 1.23611 1.16199 1.00362 0.98304 1.19314 0.96930 0.90445 0.99106 1.17950 1.10420 0.92557 0.90634 1.41993 1.50472 1.11831 1.10344 0.72323 1.22668 0.97700 0.95698 0.88106 1.20561 1.10317 0.93050 0.99329 1.23644 1.10225 1.01940 0.96335 1.84226 1.61165 1.07128 1.06094 1.21730 0.95273 1.00791 0.97582 1.21972 0.99811 0.98864 0.96063 1.20597 0.83231 0.95910 0.94910 1.44348 1.03033 1.65426 1.19340 1.19474 0.95190 1.36526 0.86613 0.90492 1.25715 0.98843 1.00907 0.98665 1.70166 1.24983 1.46246 1.16671 0.85454 0.79271 0.78415 0.78503 1.21403 1.22848 1.19141 0.93039 0.93081 0.91556 0.75905 0.82927 0.75444 0.82200 0.92562 0.90880 0.93494 0.91798 0.92485 0.98352 0.94441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.72 71.98 0.56 -4.12 16 2 C 0.16 6.22 3.20 44.98 0.14 6.36 16 3 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.14 5.08 2.32 45.07 0.10 5.19 16 5 H 0.09 3.01 7.58 -2.39 -0.02 2.99 16 6 N -0.69 -24.72 3.46 -446.35 -1.55 -26.27 16 7 C 0.59 20.93 7.74 86.37 0.67 21.60 16 8 O -0.57 -22.68 16.44 -4.48 -0.07 -22.75 16 9 C -0.26 -8.26 6.38 23.83 0.15 -8.11 16 10 C -0.02 -0.57 9.88 21.85 0.22 -0.36 16 11 C 0.00 -0.06 7.67 38.03 0.29 0.23 16 12 N -0.54 -7.19 6.21 -188.39 -1.17 -8.36 16 13 H 0.44 2.70 8.96 -92.71 -0.83 1.87 16 14 C 0.09 0.98 11.85 83.16 0.99 1.96 16 15 C -0.20 -3.59 10.85 22.25 0.24 -3.35 16 16 C -0.20 -4.94 7.31 23.11 0.17 -4.77 16 17 S 0.15 4.39 22.29 -56.49 -1.26 3.13 16 18 C -0.12 -4.09 5.58 30.62 0.17 -3.92 16 19 C -0.13 -4.97 5.93 30.67 0.18 -4.78 16 20 C 0.18 8.45 5.29 86.36 0.46 8.91 16 21 N -0.60 -28.08 2.65 -675.22 -1.79 -29.86 16 22 C -0.25 -12.64 8.61 84.03 0.72 -11.92 16 23 H 0.08 3.78 6.20 -2.91 -0.02 3.76 16 24 C -0.05 -2.46 4.96 84.86 0.42 -2.04 16 25 N -0.93 -53.82 11.14 21.65 0.24 -53.58 16 26 Si 0.95 43.69 29.58 68.60 2.03 45.72 16 27 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 30 H 0.05 1.87 6.37 -2.39 -0.02 1.86 16 31 H 0.05 1.97 7.66 -2.38 -0.02 1.96 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.40 15.08 6.82 -92.71 -0.63 14.45 16 34 H 0.15 3.74 8.00 -2.91 -0.02 3.72 16 35 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.45 16 39 H 0.05 1.88 7.53 -2.39 -0.02 1.86 16 40 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 41 H 0.06 3.06 6.06 -2.39 -0.01 3.04 16 42 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 43 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -68.29 356.84 1.51 -66.77 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -0.40 Total: 24.32 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.48 Total: 0.88 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -4.26 Total: -118.07 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.26 Total: 3.13 kcal Total: -68.29 1.51 -66.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.431 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds