Wall clock time and date at job start Tue Mar 31 2020 18:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58183 * 2 1 4 4 C 1.53191 * 109.58314 * 239.71812 * 2 1 3 5 5 H 1.08997 * 109.50454 * 305.52880 * 4 2 1 6 6 N 1.46502 * 109.49832 * 65.59469 * 4 2 1 7 7 C 1.34779 * 120.00168 * 204.99506 * 6 4 2 8 8 O 1.21732 * 119.99853 * 0.02562 * 7 6 4 9 9 C 1.46408 * 119.99757 * 179.97438 * 7 6 4 10 10 C 1.35784 * 124.95611 * 179.72329 * 9 7 6 11 11 C 1.38865 * 115.18634 * 179.83013 * 10 9 7 12 12 N 1.39743 * 139.91502 * 180.09267 * 11 10 9 13 13 H 0.96995 * 125.63251 * 0.36324 * 12 11 10 14 14 C 1.36214 * 108.73707 * 180.34557 * 12 11 10 15 15 C 1.34515 * 109.29439 * 359.97438 * 14 12 11 16 16 C 1.38242 * 113.39295 * 0.45137 * 11 10 9 17 17 S 1.75619 * 124.96315 * 0.03030 * 9 7 6 18 18 C 1.53045 * 109.30882 * 185.57508 * 4 2 1 19 19 C 1.53041 * 109.53632 * 61.36980 * 18 4 2 20 20 C 1.53192 * 109.31225 * 298.62904 * 19 18 4 21 21 N 1.46927 * 109.58725 * 120.42992 * 2 1 3 22 22 C 1.36937 * 120.62933 * 353.39546 * 21 2 1 23 23 H 1.07998 * 120.00211 * 29.01566 * 22 21 2 24 24 C 1.38818 * 119.99777 * 209.01272 * 22 21 2 25 25 N 1.31620 * 119.99958 * 15.02695 * 24 22 21 26 26 Si 1.86798 * 120.00073 * 195.02389 * 24 22 21 27 27 H 1.48500 * 109.47228 * 60.00227 * 26 24 22 28 28 H 1.48495 * 109.47366 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47083 * 300.00327 * 26 24 22 30 30 H 1.08999 * 109.47198 * 180.28402 * 1 2 3 31 31 H 1.09005 * 109.47000 * 300.27886 * 1 2 3 32 32 H 1.08996 * 109.47584 * 60.28424 * 1 2 3 33 33 H 0.97001 * 119.99727 * 24.99557 * 6 4 2 34 34 H 1.07999 * 122.40559 * 0.02562 * 10 9 7 35 35 H 1.08001 * 125.35829 * 179.97438 * 14 12 11 36 36 H 1.08003 * 126.07293 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.45680 * 181.38951 * 18 4 2 38 38 H 1.08994 * 109.46307 * 301.34514 * 18 4 2 39 39 H 1.08994 * 109.49702 * 58.58165 * 19 18 4 40 40 H 1.09000 * 109.49103 * 178.68061 * 19 18 4 41 41 H 1.08994 * 109.58845 * 174.42307 * 20 19 18 42 42 H 1.08999 * 109.58611 * 294.71381 * 20 19 18 43 43 H 0.96997 * 120.00277 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.6030 -1.7236 -1.2936 6 7 1.6698 0.0295 -2.4435 7 6 1.5464 -0.6009 -3.6284 8 8 1.7451 -1.7995 -3.7038 9 6 1.1724 0.1559 -4.8247 10 6 1.0254 -0.3741 -6.0661 11 6 0.6612 0.5300 -7.0553 12 7 0.3827 0.5622 -8.4243 13 1 0.3997 -0.2011 -9.0225 14 6 0.0831 1.8425 -8.7799 15 6 0.1573 2.6341 -7.6948 16 6 0.5223 1.8248 -6.5913 17 16 0.8559 1.8829 -4.8649 18 6 3.5675 -0.8464 -1.1713 19 6 3.9569 -1.6658 0.0613 20 6 3.4651 -0.9487 1.3225 21 7 2.0226 -0.7011 1.1936 22 6 1.1537 -1.1159 2.1673 23 1 0.1360 -1.3700 1.9104 24 6 1.5811 -1.2098 3.4847 25 7 2.7043 -0.6320 3.8549 26 14 0.5622 -2.1560 4.7320 27 1 0.4327 -3.5694 4.2954 28 1 1.2305 -2.1061 6.0572 29 1 -0.7870 -1.5442 4.8353 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.5111 0.9845 -2.3834 34 1 1.1775 -1.4239 -6.2690 35 1 -0.1736 2.1706 -9.7763 36 1 -0.0283 3.6978 -7.6697 37 1 3.9378 -1.3421 -2.0687 38 1 4.0061 0.1488 -1.0992 39 1 3.4983 -2.6528 0.0017 40 1 5.0412 -1.7697 0.1012 41 1 3.6519 -1.5745 2.1950 42 1 3.9921 -0.0010 1.4329 43 1 3.0028 -0.6973 4.7755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000994299625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:03 Heat of formation + Delta-G solvation = 55.504156 kcal Electronic energy + Delta-G solvation = -25985.211924 eV Core-core repulsion = 22351.229381 eV Total energy + Delta-G solvation = -3633.982544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42874 -39.71822 -37.66812 -35.20414 -34.28439 -32.56020 -31.67717 -31.18995 -29.56658 -28.15475 -26.19983 -25.02894 -24.12665 -22.32644 -21.45708 -20.84557 -20.66823 -19.93855 -19.08784 -18.60039 -16.84643 -16.38761 -15.75903 -15.64359 -15.16714 -14.93848 -14.55417 -14.52606 -14.01941 -13.75327 -13.71874 -13.59734 -13.34251 -12.97485 -12.78114 -12.52951 -12.17129 -11.75377 -11.61774 -11.51339 -11.08271 -11.07589 -10.88896 -10.73537 -10.55978 -10.27773 -10.13489 -10.02884 -9.96751 -9.91862 -9.63930 -9.36656 -8.72251 -8.44125 -8.31861 -7.86961 -6.65884 -5.77345 -3.21685 0.40290 1.27241 1.81552 2.20693 2.39882 2.70038 3.32745 3.36575 3.40403 3.45722 3.48185 4.50210 4.61565 4.62865 4.78238 5.08775 5.21929 5.31602 5.41204 5.52551 5.55001 5.61267 5.71614 5.81004 5.81938 5.99608 6.09891 6.23130 6.24122 6.36427 6.44330 6.46599 6.55720 6.63710 6.72750 6.77993 6.87557 7.00823 7.08898 7.10243 7.42816 7.68760 7.71013 7.83319 8.34035 8.47018 9.22149 9.84693 10.40946 11.31268 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.002571 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.024172 B =10888.387165 C =11177.121853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.167 3.833 3 H 0.028 0.972 4 C 0.131 3.869 5 H 0.089 0.911 6 N -0.711 5.711 7 C 0.588 3.412 8 O -0.532 6.532 9 C -0.228 4.228 10 C -0.037 4.037 11 C 0.025 3.975 12 N -0.558 5.558 13 H 0.419 0.581 14 C 0.055 3.945 15 C -0.171 4.171 16 C -0.190 4.190 17 S 0.166 5.834 18 C -0.118 4.118 19 C -0.140 4.140 20 C 0.169 3.831 21 N -0.581 5.581 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.004 3.996 25 N -0.903 5.903 26 Si 0.903 3.097 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.394 0.606 34 H 0.149 0.851 35 H 0.177 0.823 36 H 0.147 0.853 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 6.385 -24.316 25.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.059 3.941 3 H 0.046 0.954 4 C 0.026 3.974 5 H 0.107 0.893 6 N -0.360 5.360 7 C 0.373 3.627 8 O -0.411 6.411 9 C -0.349 4.349 10 C -0.073 4.073 11 C -0.089 4.089 12 N -0.159 5.159 13 H 0.257 0.743 14 C -0.079 4.079 15 C -0.201 4.201 16 C -0.312 4.312 17 S 0.429 5.571 18 C -0.156 4.156 19 C -0.180 4.180 20 C 0.043 3.957 21 N -0.304 5.304 22 C -0.381 4.381 23 H 0.088 0.912 24 C -0.195 4.195 25 N -0.547 5.547 26 Si 0.733 3.267 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.228 0.772 34 H 0.166 0.834 35 H 0.194 0.806 36 H 0.165 0.835 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.140 6.533 -23.094 24.205 hybrid contribution -0.509 -1.378 -0.799 1.672 sum -3.649 5.155 -23.893 24.714 Atomic orbital electron populations 1.21835 0.95609 1.01789 1.00317 1.20561 0.93312 0.93589 0.86591 0.95403 1.21863 0.95283 0.96848 0.83392 0.89313 1.46009 1.69759 1.11981 1.08253 1.16822 0.77372 0.86588 0.81881 1.90833 1.51100 1.13902 1.85276 1.23887 1.15345 0.97949 0.97670 1.19228 0.99087 1.00034 0.88952 1.18004 1.11308 0.94463 0.85099 1.41899 1.58004 1.09592 1.06385 0.74318 1.21860 1.03544 0.82591 0.99867 1.20137 1.11005 0.99459 0.89493 1.23210 1.12142 0.97365 0.98482 1.83798 1.70346 1.02834 1.00144 1.21776 0.95214 1.00191 0.98456 1.22185 0.99249 0.99697 0.96831 1.20856 0.83028 0.97287 0.94513 1.44026 1.03173 1.64961 1.18289 1.19136 0.94823 1.37964 0.86187 0.91191 1.25072 0.97825 0.99665 0.96925 1.70008 1.23305 1.44458 1.16955 0.86368 0.79594 0.80222 0.80556 1.21000 1.21678 1.20895 0.92594 0.91673 0.94244 0.77193 0.83368 0.80551 0.83540 0.93101 0.92654 0.92492 0.92962 0.89215 0.96272 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.84 37.16 0.29 -2.31 16 2 C 0.17 3.41 3.03 -67.60 -0.21 3.20 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.13 2.44 1.99 -67.81 -0.14 2.31 16 5 H 0.09 1.88 7.57 -51.93 -0.39 1.48 16 6 N -0.71 -11.16 4.57 -55.08 -0.25 -11.41 16 7 C 0.59 9.60 7.74 -12.97 -0.10 9.50 16 8 O -0.53 -10.43 16.43 5.16 0.08 -10.35 16 9 C -0.23 -3.09 6.38 -37.17 -0.24 -3.32 16 10 C -0.04 -0.46 9.88 -40.23 -0.40 -0.85 16 11 C 0.02 0.27 7.67 -84.02 -0.64 -0.37 16 12 N -0.56 -4.02 6.21 -10.90 -0.07 -4.09 16 13 H 0.42 1.73 8.96 -40.82 -0.37 1.36 16 14 C 0.05 0.34 11.85 -16.92 -0.20 0.14 16 15 C -0.17 -1.44 10.85 -39.60 -0.43 -1.87 16 16 C -0.19 -2.09 7.31 -38.29 -0.28 -2.37 16 17 S 0.17 1.87 22.29 -107.50 -2.40 -0.53 16 18 C -0.12 -2.17 5.46 -26.69 -0.15 -2.31 16 19 C -0.14 -2.79 6.08 -26.61 -0.16 -2.95 16 20 C 0.17 4.00 5.29 -3.71 -0.02 3.98 16 21 N -0.58 -14.22 2.99 -164.77 -0.49 -14.71 16 22 C -0.25 -6.70 8.61 -15.06 -0.13 -6.83 16 23 H 0.07 1.83 6.20 -52.49 -0.33 1.50 16 24 C 0.00 0.10 4.96 -17.43 -0.09 0.02 16 25 N -0.90 -25.81 11.14 55.49 0.62 -25.19 16 26 Si 0.90 21.60 29.58 -169.99 -5.03 16.57 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 30 H 0.05 1.10 7.40 -51.93 -0.38 0.72 16 31 H 0.06 1.30 7.66 -51.93 -0.40 0.90 16 32 H 0.04 0.62 7.78 -51.93 -0.40 0.22 16 33 H 0.39 5.36 7.66 -40.82 -0.31 5.05 16 34 H 0.15 1.73 8.00 -52.49 -0.42 1.31 16 35 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 36 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -32.43 360.06 -10.83 -43.26 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.84 Total: 5.07 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.88 Total: -4.04 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.19 Total: -55.40 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.40 Total: -0.53 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.43 -10.83 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.763 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds