Wall clock time and date at job start Tue Mar 31 2020 18:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.58183 * 2 1 4 4 C 1.53191 * 109.58314 * 239.71812 * 2 1 3 5 5 H 1.08997 * 109.50454 * 305.52880 * 4 2 1 6 6 N 1.46502 * 109.49832 * 65.59469 * 4 2 1 7 7 C 1.34779 * 120.00168 * 204.99506 * 6 4 2 8 8 O 1.21732 * 119.99853 * 0.02562 * 7 6 4 9 9 C 1.46408 * 119.99757 * 179.97438 * 7 6 4 10 10 C 1.35784 * 124.95611 * 179.72329 * 9 7 6 11 11 C 1.38865 * 115.18634 * 179.83013 * 10 9 7 12 12 N 1.39743 * 139.91502 * 180.09267 * 11 10 9 13 13 H 0.96995 * 125.63251 * 0.36324 * 12 11 10 14 14 C 1.36214 * 108.73707 * 180.34557 * 12 11 10 15 15 C 1.34515 * 109.29439 * 359.97438 * 14 12 11 16 16 C 1.38242 * 113.39295 * 0.45137 * 11 10 9 17 17 S 1.75619 * 124.96315 * 0.03030 * 9 7 6 18 18 C 1.53045 * 109.30882 * 185.57508 * 4 2 1 19 19 C 1.53041 * 109.53632 * 61.36980 * 18 4 2 20 20 C 1.53192 * 109.31225 * 298.62904 * 19 18 4 21 21 N 1.46927 * 109.58725 * 120.42992 * 2 1 3 22 22 C 1.36937 * 120.62933 * 353.39546 * 21 2 1 23 23 H 1.07998 * 120.00211 * 29.01566 * 22 21 2 24 24 C 1.38818 * 119.99777 * 209.01272 * 22 21 2 25 25 N 1.31620 * 119.99958 * 15.02695 * 24 22 21 26 26 Si 1.86798 * 120.00073 * 195.02389 * 24 22 21 27 27 H 1.48500 * 109.47228 * 60.00227 * 26 24 22 28 28 H 1.48495 * 109.47366 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.47083 * 300.00327 * 26 24 22 30 30 H 1.08999 * 109.47198 * 180.28402 * 1 2 3 31 31 H 1.09005 * 109.47000 * 300.27886 * 1 2 3 32 32 H 1.08996 * 109.47584 * 60.28424 * 1 2 3 33 33 H 0.97001 * 119.99727 * 24.99557 * 6 4 2 34 34 H 1.07999 * 122.40559 * 0.02562 * 10 9 7 35 35 H 1.08001 * 125.35829 * 179.97438 * 14 12 11 36 36 H 1.08003 * 126.07293 * 180.02562 * 15 14 12 37 37 H 1.09005 * 109.45680 * 181.38951 * 18 4 2 38 38 H 1.08994 * 109.46307 * 301.34514 * 18 4 2 39 39 H 1.08994 * 109.49702 * 58.58165 * 19 18 4 40 40 H 1.09000 * 109.49103 * 178.68061 * 19 18 4 41 41 H 1.08994 * 109.58845 * 174.42307 * 20 19 18 42 42 H 1.08999 * 109.58611 * 294.71381 * 20 19 18 43 43 H 0.96997 * 120.00277 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2464 5 1 1.6030 -1.7236 -1.2936 6 7 1.6698 0.0295 -2.4435 7 6 1.5464 -0.6009 -3.6284 8 8 1.7451 -1.7995 -3.7038 9 6 1.1724 0.1559 -4.8247 10 6 1.0254 -0.3741 -6.0661 11 6 0.6612 0.5300 -7.0553 12 7 0.3827 0.5622 -8.4243 13 1 0.3997 -0.2011 -9.0225 14 6 0.0831 1.8425 -8.7799 15 6 0.1573 2.6341 -7.6948 16 6 0.5223 1.8248 -6.5913 17 16 0.8559 1.8829 -4.8649 18 6 3.5675 -0.8464 -1.1713 19 6 3.9569 -1.6658 0.0613 20 6 3.4651 -0.9487 1.3225 21 7 2.0226 -0.7011 1.1936 22 6 1.1537 -1.1159 2.1673 23 1 0.1360 -1.3700 1.9104 24 6 1.5811 -1.2098 3.4847 25 7 2.7043 -0.6320 3.8549 26 14 0.5622 -2.1560 4.7320 27 1 0.4327 -3.5694 4.2954 28 1 1.2305 -2.1061 6.0572 29 1 -0.7870 -1.5442 4.8353 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 1.5111 0.9845 -2.3834 34 1 1.1775 -1.4239 -6.2690 35 1 -0.1736 2.1706 -9.7763 36 1 -0.0283 3.6978 -7.6697 37 1 3.9378 -1.3421 -2.0687 38 1 4.0061 0.1488 -1.0992 39 1 3.4983 -2.6528 0.0017 40 1 5.0412 -1.7697 0.1012 41 1 3.6519 -1.5745 2.1950 42 1 3.9921 -0.0010 1.4329 43 1 3.0028 -0.6973 4.7755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994299625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:02 Heat of formation + Delta-G solvation = 35.004612 kcal Electronic energy + Delta-G solvation = -25986.100851 eV Core-core repulsion = 22351.229381 eV Total energy + Delta-G solvation = -3634.871471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10979 -41.08961 -39.26813 -36.18171 -35.81679 -34.28177 -33.43779 -31.85259 -31.19895 -29.19202 -27.79599 -26.87519 -25.24345 -23.66279 -22.52918 -22.32691 -21.62061 -21.32891 -20.51309 -19.41212 -18.28623 -17.83937 -17.34003 -16.73797 -16.45985 -16.24132 -15.71779 -15.61955 -15.52975 -15.27895 -14.98617 -14.90169 -14.51272 -14.36313 -14.28400 -13.65420 -13.35688 -13.25196 -12.95653 -12.80013 -12.72253 -12.56079 -12.50122 -12.38067 -12.02617 -11.94144 -11.85146 -11.78277 -11.63194 -11.26062 -11.07225 -10.65512 -10.51149 -10.12060 -9.12438 -8.65388 -8.60802 -7.84264 -5.30410 -0.49606 0.43566 0.97164 1.39442 1.47947 1.50598 1.56501 1.74283 1.90041 2.16843 2.29180 2.55151 3.31049 3.58861 3.72887 3.89460 3.97185 4.02577 4.18135 4.20283 4.24315 4.35517 4.49480 4.57574 4.61081 4.71677 4.80834 4.88340 4.91148 4.99001 5.03182 5.07387 5.13163 5.19100 5.26403 5.42157 5.45652 5.57469 5.58640 5.71292 5.77724 5.80868 6.42148 6.44008 6.62452 7.09027 7.17752 7.87011 8.38867 9.22644 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.027363 B = 0.002571 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.024172 B =10888.387165 C =11177.121853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.165 3.835 3 H 0.033 0.967 4 C 0.147 3.853 5 H 0.063 0.937 6 N -0.703 5.703 7 C 0.592 3.408 8 O -0.574 6.574 9 C -0.267 4.267 10 C -0.024 4.024 11 C -0.006 4.006 12 N -0.547 5.547 13 H 0.435 0.565 14 C 0.091 3.909 15 C -0.199 4.199 16 C -0.196 4.196 17 S 0.176 5.824 18 C -0.111 4.111 19 C -0.129 4.129 20 C 0.175 3.825 21 N -0.599 5.599 22 C -0.254 4.254 23 H 0.072 0.928 24 C -0.049 4.049 25 N -0.933 5.933 26 Si 0.962 3.038 27 H -0.282 1.282 28 H -0.295 1.295 29 H -0.275 1.275 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.406 0.594 34 H 0.146 0.854 35 H 0.227 0.773 36 H 0.165 0.835 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.496 7.659 -27.706 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.058 3.942 3 H 0.051 0.949 4 C 0.041 3.959 5 H 0.081 0.919 6 N -0.353 5.353 7 C 0.379 3.621 8 O -0.455 6.455 9 C -0.387 4.387 10 C -0.061 4.061 11 C -0.119 4.119 12 N -0.149 5.149 13 H 0.275 0.725 14 C -0.045 4.045 15 C -0.228 4.228 16 C -0.319 4.319 17 S 0.439 5.561 18 C -0.149 4.149 19 C -0.168 4.168 20 C 0.049 3.951 21 N -0.323 5.323 22 C -0.384 4.384 23 H 0.090 0.910 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.791 3.209 27 H -0.209 1.209 28 H -0.221 1.221 29 H -0.200 1.200 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.164 0.836 35 H 0.243 0.757 36 H 0.182 0.818 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.023 0.977 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.273 7.813 -26.512 27.967 hybrid contribution -0.218 -1.679 -0.011 1.694 sum -4.491 6.134 -26.522 27.590 Atomic orbital electron populations 1.21746 0.94455 1.01211 1.01263 1.20699 0.94324 0.93472 0.85731 0.94895 1.21397 0.95192 0.95563 0.83740 0.91920 1.45774 1.69780 1.12347 1.07380 1.17132 0.76253 0.86204 0.82471 1.90800 1.53066 1.15717 1.85965 1.23504 1.18979 0.99319 0.96870 1.19336 0.97331 1.00239 0.89151 1.17933 1.13249 0.94026 0.86666 1.42044 1.56759 1.10874 1.05203 0.72489 1.22702 0.99243 0.81305 1.01207 1.20569 1.12346 1.00742 0.89187 1.23629 1.11478 0.98240 0.98589 1.83592 1.70517 1.00879 1.01117 1.21704 0.95066 1.00491 0.97660 1.22021 1.00420 0.98726 0.95654 1.20662 0.83064 0.96250 0.95096 1.44257 1.03218 1.65712 1.19092 1.19422 0.95175 1.37070 0.86780 0.90995 1.25764 0.99054 1.00921 0.98650 1.70154 1.24868 1.46051 1.16861 0.85420 0.78442 0.78918 0.78142 1.20867 1.22087 1.20044 0.93857 0.92927 0.91045 0.75778 0.83597 0.75671 0.81755 0.92577 0.91526 0.93615 0.90757 0.92396 0.97722 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 7.84 71.98 0.56 -4.29 16 2 C 0.16 6.74 3.03 44.98 0.14 6.87 16 3 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 4 C 0.15 5.51 1.99 45.07 0.09 5.60 16 5 H 0.06 2.71 7.57 -2.39 -0.02 2.69 16 6 N -0.70 -21.90 4.57 -446.36 -2.04 -23.94 16 7 C 0.59 19.46 7.74 86.37 0.67 20.13 16 8 O -0.57 -23.01 16.43 -4.45 -0.07 -23.09 16 9 C -0.27 -7.16 6.38 23.83 0.15 -7.01 16 10 C -0.02 -0.58 9.88 21.85 0.22 -0.36 16 11 C -0.01 -0.11 7.67 38.03 0.29 0.18 16 12 N -0.55 -5.92 6.21 -188.39 -1.17 -7.09 16 13 H 0.43 2.00 8.96 -92.71 -0.83 1.17 16 14 C 0.09 0.67 11.85 83.16 0.99 1.66 16 15 C -0.20 -2.62 10.85 22.26 0.24 -2.38 16 16 C -0.20 -3.90 7.31 23.11 0.17 -3.73 16 17 S 0.18 3.78 22.29 -56.49 -1.26 2.52 16 18 C -0.11 -4.04 5.46 30.62 0.17 -3.87 16 19 C -0.13 -5.17 6.08 30.67 0.19 -4.98 16 20 C 0.17 8.54 5.29 86.36 0.46 9.00 16 21 N -0.60 -29.93 2.99 -675.23 -2.02 -31.95 16 22 C -0.25 -13.81 8.61 84.03 0.72 -13.09 16 23 H 0.07 3.81 6.20 -2.91 -0.02 3.79 16 24 C -0.05 -2.70 4.96 84.86 0.42 -2.28 16 25 N -0.93 -54.90 11.14 21.65 0.24 -54.66 16 26 Si 0.96 45.23 29.58 68.60 2.03 47.26 16 27 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 30 H 0.04 1.71 7.40 -2.39 -0.02 1.70 16 31 H 0.05 2.09 7.66 -2.38 -0.02 2.07 16 32 H 0.07 2.18 7.78 -2.39 -0.02 2.17 16 33 H 0.41 10.72 7.66 -92.71 -0.71 10.01 16 34 H 0.15 3.41 8.00 -2.91 -0.02 3.39 16 35 H 0.23 -0.59 8.06 -2.91 -0.02 -0.61 16 36 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 37 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.06 3.20 6.06 -2.39 -0.01 3.18 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -72.68 360.06 0.70 -71.99 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.48 Total: 17.54 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 5.47 Total: 1.43 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -4.99 Total: -117.65 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.26 Total: 2.52 kcal Total: -72.68 0.70 -71.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.994 kcal (2) G-P(sol) polarization free energy of solvation -72.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds