Wall clock time and date at job start Tue Mar 31 2020 18:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70332 * 2 1 4 4 C 1.53194 * 109.58774 * 120.35794 * 2 1 3 5 5 H 1.08999 * 109.49688 * 294.40561 * 4 2 1 6 6 N 1.46495 * 109.49711 * 54.46691 * 4 2 1 7 7 C 1.34775 * 120.00302 * 205.00076 * 6 4 2 8 8 O 1.21734 * 119.99531 * 0.02562 * 7 6 4 9 9 C 1.46409 * 120.00299 * 180.02562 * 7 6 4 10 10 C 1.35781 * 124.96172 * 179.97438 * 9 7 6 11 11 C 1.38865 * 115.18642 * 179.97438 * 10 9 7 12 12 N 1.39751 * 139.91514 * 179.97438 * 11 10 9 13 13 H 0.97005 * 125.62942 * 0.02638 * 12 11 10 14 14 C 1.36215 * 108.73565 * 180.02562 * 12 11 10 15 15 C 1.34512 * 109.29476 * 359.97438 * 14 12 11 16 16 C 1.38238 * 113.39505 * 0.02562 * 11 10 9 17 17 S 1.75619 * 124.95771 * 359.69249 * 9 7 6 18 18 C 1.53104 * 109.33196 * 174.42006 * 4 2 1 19 19 C 1.53038 * 109.50329 * 298.65820 * 18 4 2 20 20 C 1.53192 * 109.33923 * 61.34875 * 19 18 4 21 21 N 1.46926 * 108.77740 * 305.34770 * 20 19 18 22 22 C 1.36938 * 120.63598 * 233.63714 * 21 20 19 23 23 H 1.07992 * 120.00595 * 150.16171 * 22 21 20 24 24 C 1.38819 * 119.99549 * 330.15982 * 22 21 20 25 25 N 1.31619 * 119.99679 * 344.48601 * 24 22 21 26 26 Si 1.86797 * 120.00224 * 164.48742 * 24 22 21 27 27 H 1.48503 * 109.46751 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47159 * 119.99571 * 26 24 22 29 29 H 1.48496 * 109.46972 * 240.00056 * 26 24 22 30 30 H 1.08996 * 109.47216 * 180.35285 * 1 2 3 31 31 H 1.09005 * 109.47222 * 300.35462 * 1 2 3 32 32 H 1.09004 * 109.47140 * 60.35230 * 1 2 3 33 33 H 0.97006 * 120.00290 * 24.99997 * 6 4 2 34 34 H 1.07999 * 122.40070 * 359.97438 * 10 9 7 35 35 H 1.07996 * 125.34850 * 179.97438 * 14 12 11 36 36 H 1.07994 * 126.07127 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.50441 * 178.62958 * 18 4 2 38 38 H 1.09001 * 109.44749 * 58.64831 * 18 4 2 39 39 H 1.08995 * 109.50004 * 301.38158 * 19 18 4 40 40 H 1.09003 * 109.49866 * 181.31424 * 19 18 4 41 41 H 1.09002 * 109.59181 * 65.13420 * 20 19 18 42 42 H 1.09001 * 109.58705 * 185.56176 * 20 19 18 43 43 H 0.97009 * 119.99606 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 1 1.7655 -0.1672 2.1368 6 7 1.4514 -2.0679 1.3071 7 6 1.3283 -2.6964 2.4929 8 8 1.7089 -2.1516 3.5128 9 6 0.7370 -4.0344 2.5545 10 6 0.5654 -4.7577 3.6908 11 6 -0.0181 -6.0054 3.5146 12 7 -0.4148 -7.1158 4.2647 13 1 -0.3270 -7.2087 5.2263 14 6 -0.9451 -8.0459 3.4226 15 6 -0.9057 -7.5780 2.1621 16 6 -0.3217 -6.2881 2.1959 17 16 0.1396 -4.9352 1.1704 18 6 3.5681 -0.8484 1.1705 19 6 3.9568 -1.6658 -0.0636 20 6 3.4650 -0.9469 -1.3238 21 7 2.0225 -0.6995 -1.1945 22 6 1.1535 -1.1134 -2.1685 23 1 0.1396 -1.3804 -1.9097 24 6 1.5759 -1.1897 -3.4887 25 7 2.6864 -0.5887 -3.8601 26 14 0.5682 -2.1452 -4.7381 27 1 -0.6265 -2.7236 -4.0721 28 1 0.1355 -1.2328 -5.8269 29 1 1.3948 -3.2392 -5.3081 30 1 -0.3633 -1.0276 0.0063 31 1 -0.3634 0.5193 0.8868 32 1 -0.3633 0.5084 -0.8932 33 1 1.1477 -2.5019 0.4944 34 1 0.8615 -4.3890 4.6617 35 1 -1.3357 -9.0077 3.7203 36 1 -1.2564 -8.0945 1.2809 37 1 3.9389 -1.3454 2.0669 38 1 4.0067 0.1470 1.0996 39 1 3.4982 -2.6528 -0.0054 40 1 5.0411 -1.7702 -0.1041 41 1 3.9902 0.0021 -1.4317 42 1 3.6517 -1.5717 -2.1972 43 1 2.9814 -0.6417 -4.7827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000994299627.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:06 Heat of formation + Delta-G solvation = 38.253380 kcal Electronic energy + Delta-G solvation = -26748.896024 eV Core-core repulsion = 23114.165430 eV Total energy + Delta-G solvation = -3634.730593 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.10523 -41.13935 -39.19287 -36.07617 -35.56928 -34.04556 -33.40783 -31.85526 -31.29814 -29.16785 -27.81331 -26.83654 -25.20053 -23.68705 -22.73406 -22.35610 -21.68570 -20.76163 -20.37691 -19.35644 -18.24655 -17.90702 -17.10920 -16.59665 -16.44991 -16.34638 -15.74554 -15.56756 -15.52145 -15.22163 -14.86402 -14.67310 -14.58390 -14.35780 -14.24514 -13.64595 -13.54754 -12.95949 -12.95163 -12.90150 -12.73887 -12.49007 -12.43863 -12.30901 -12.18944 -11.90163 -11.84574 -11.67400 -11.38658 -11.13268 -11.02101 -10.65561 -10.48918 -10.01194 -9.12164 -8.63068 -8.58941 -7.80207 -5.26781 -0.46818 0.45499 1.01968 1.41406 1.49138 1.53054 1.61251 1.73486 1.99049 2.21149 2.39441 2.55553 3.36327 3.59928 3.75860 3.97052 4.02836 4.06363 4.18267 4.20757 4.26098 4.39483 4.56062 4.57323 4.66404 4.71314 4.82403 4.94729 4.99148 4.99981 5.04231 5.08521 5.12144 5.21482 5.34467 5.45133 5.55011 5.56289 5.60547 5.76200 5.80255 5.80915 6.46333 6.54762 6.64214 7.14512 7.21845 7.90856 8.44331 9.26544 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.004136 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.289443 B = 6768.090115 C = 8195.931701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.038 0.962 4 C 0.141 3.859 5 H 0.086 0.914 6 N -0.693 5.693 7 C 0.589 3.411 8 O -0.574 6.574 9 C -0.265 4.265 10 C -0.021 4.021 11 C -0.003 4.003 12 N -0.544 5.544 13 H 0.436 0.564 14 C 0.093 3.907 15 C -0.203 4.203 16 C -0.198 4.198 17 S 0.151 5.849 18 C -0.115 4.115 19 C -0.128 4.128 20 C 0.180 3.820 21 N -0.597 5.597 22 C -0.248 4.248 23 H 0.077 0.923 24 C -0.045 4.045 25 N -0.933 5.933 26 Si 0.953 3.047 27 H -0.263 1.263 28 H -0.298 1.298 29 H -0.295 1.295 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.405 0.595 34 H 0.153 0.847 35 H 0.229 0.771 36 H 0.160 0.840 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.064 0.936 41 H -0.001 1.001 42 H 0.054 0.946 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 -14.628 16.309 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.055 0.945 4 C 0.035 3.965 5 H 0.103 0.897 6 N -0.342 5.342 7 C 0.377 3.623 8 O -0.456 6.456 9 C -0.385 4.385 10 C -0.058 4.058 11 C -0.116 4.116 12 N -0.146 5.146 13 H 0.277 0.723 14 C -0.042 4.042 15 C -0.233 4.233 16 C -0.321 4.321 17 S 0.414 5.586 18 C -0.154 4.154 19 C -0.167 4.167 20 C 0.055 3.945 21 N -0.321 5.321 22 C -0.378 4.378 23 H 0.094 0.906 24 C -0.241 4.241 25 N -0.580 5.580 26 Si 0.782 3.218 27 H -0.187 1.187 28 H -0.225 1.225 29 H -0.222 1.222 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.241 0.759 34 H 0.171 0.829 35 H 0.246 0.754 36 H 0.178 0.822 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.602 -13.863 15.449 21.781 hybrid contribution -0.009 -0.489 0.250 0.550 sum -6.611 -14.352 15.698 22.274 Atomic orbital electron populations 1.21716 0.94362 1.01492 1.01103 1.20859 0.94457 0.93628 0.86043 0.94455 1.21465 0.93079 0.82826 0.99137 0.89654 1.45836 1.61335 1.18565 1.08507 1.17065 0.77833 0.83854 0.83586 1.90750 1.52488 1.67442 1.34955 1.23611 1.16114 1.00431 0.98321 1.19312 0.96909 0.90492 0.99086 1.17948 1.10462 0.92556 0.90597 1.41994 1.50459 1.11870 1.10315 0.72323 1.22671 0.97711 0.95689 0.88102 1.20561 1.10258 0.93120 0.99321 1.23642 1.10267 1.01877 0.96350 1.84227 1.61110 1.06954 1.06314 1.21739 0.95250 1.00792 0.97582 1.21969 0.99832 0.98878 0.96023 1.20568 0.83292 0.95859 0.94821 1.44346 1.03004 1.65441 1.19346 1.19478 0.95522 1.36321 0.86447 0.90557 1.25730 0.98896 1.00743 0.98701 1.70181 1.25797 1.45567 1.16435 0.85413 0.78827 0.78105 0.79429 1.18664 1.22517 1.22162 0.93058 0.91570 0.93063 0.75901 0.82930 0.75445 0.82201 0.92532 0.90885 0.93445 0.91773 0.98311 0.92744 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.74 71.98 0.56 -4.13 16 2 C 0.16 6.22 3.20 44.97 0.14 6.36 16 3 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.14 5.08 2.33 45.09 0.10 5.18 16 5 H 0.09 3.00 7.57 -2.39 -0.02 2.98 16 6 N -0.69 -24.70 3.45 -446.28 -1.54 -26.23 16 7 C 0.59 20.91 7.74 86.37 0.67 21.58 16 8 O -0.57 -22.66 16.43 -4.46 -0.07 -22.73 16 9 C -0.26 -8.25 6.38 23.83 0.15 -8.10 16 10 C -0.02 -0.57 9.88 21.85 0.22 -0.36 16 11 C 0.00 -0.06 7.67 38.03 0.29 0.23 16 12 N -0.54 -7.17 6.21 -188.39 -1.17 -8.34 16 13 H 0.44 2.69 8.96 -92.70 -0.83 1.86 16 14 C 0.09 0.97 11.85 83.16 0.99 1.96 16 15 C -0.20 -3.58 10.85 22.26 0.24 -3.34 16 16 C -0.20 -4.93 7.31 23.11 0.17 -4.76 16 17 S 0.15 4.39 22.29 -56.49 -1.26 3.13 16 18 C -0.12 -4.08 5.58 30.64 0.17 -3.90 16 19 C -0.13 -4.94 5.93 30.67 0.18 -4.76 16 20 C 0.18 8.48 5.28 86.36 0.46 8.94 16 21 N -0.60 -28.06 2.64 -675.22 -1.78 -29.84 16 22 C -0.25 -12.62 8.57 84.03 0.72 -11.90 16 23 H 0.08 3.75 6.24 -2.91 -0.02 3.73 16 24 C -0.05 -2.42 4.94 84.86 0.42 -2.00 16 25 N -0.93 -53.80 11.23 21.65 0.24 -53.56 16 26 Si 0.95 43.67 29.58 68.60 2.03 45.70 16 27 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 29 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 30 H 0.05 1.87 6.39 -2.39 -0.02 1.85 16 31 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.05 1.99 7.63 -2.39 -0.02 1.97 16 33 H 0.40 15.07 6.83 -92.70 -0.63 14.43 16 34 H 0.15 3.73 8.00 -2.91 -0.02 3.71 16 35 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 36 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.05 1.89 7.53 -2.39 -0.02 1.87 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.05 2.91 6.15 -2.39 -0.01 2.90 16 43 H 0.25 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -68.37 356.98 1.52 -66.84 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: -0.40 Total: 24.04 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 5.48 Total: 1.00 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -4.25 Total: -117.98 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.07 Total: -22.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.26 Total: 3.13 kcal Total: -68.37 1.52 -66.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000994299627.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.097 kcal (2) G-P(sol) polarization free energy of solvation -68.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds